Wall clock time and date at job start Tue Mar 31 2020 14:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52699 * 2 1 4 4 C 1.53196 * 109.48804 * 239.90760 * 2 1 3 5 5 N 1.46924 * 108.76800 * 185.40124 * 4 2 1 6 6 C 1.34773 * 120.63215 * 233.60116 * 5 4 2 7 7 O 1.21282 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.00001 * 180.02562 * 6 5 4 9 9 O 1.42902 * 109.47155 * 179.97438 * 8 6 5 10 10 C 1.36224 * 116.99936 * 180.02562 * 9 8 6 11 11 C 1.40110 * 126.05395 * 359.69563 * 10 9 8 12 12 N 1.30867 * 108.36152 * 179.81603 * 11 10 9 13 13 N 1.40083 * 108.31978 * 0.44111 * 12 11 10 14 14 C 1.46496 * 126.07778 * 179.75809 * 13 12 11 15 15 C 1.35588 * 126.05125 * 179.97438 * 10 9 8 16 16 C 1.46932 * 118.73828 * 53.61710 * 5 4 2 17 17 C 1.53196 * 108.77384 * 306.39467 * 16 5 4 18 18 C 1.53036 * 109.31536 * 54.63418 * 17 16 5 19 19 H 1.09007 * 109.46211 * 58.63452 * 18 17 16 20 20 N 1.46496 * 109.46261 * 178.61527 * 18 17 16 21 21 C 1.36945 * 119.99718 * 275.02605 * 20 18 17 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 270.00277 * 25 23 21 27 27 H 1.48501 * 109.47062 * 30.00228 * 25 23 21 28 28 H 1.48499 * 109.46981 * 150.00382 * 25 23 21 29 29 H 1.09002 * 109.47271 * 299.92312 * 1 2 3 30 30 H 1.09001 * 109.46821 * 59.91874 * 1 2 3 31 31 H 1.08993 * 109.47267 * 179.91522 * 1 2 3 32 32 H 1.09005 * 109.57902 * 65.62432 * 4 2 1 33 33 H 1.08993 * 109.72026 * 305.26324 * 4 2 1 34 34 H 1.08990 * 109.47106 * 299.99661 * 8 6 5 35 35 H 1.09007 * 109.46881 * 59.99892 * 8 6 5 36 36 H 1.08011 * 125.81926 * 359.97438 * 11 10 9 37 37 H 1.08997 * 109.46904 * 269.95128 * 14 13 12 38 38 H 1.08995 * 109.47385 * 29.95565 * 14 13 12 39 39 H 1.09007 * 109.47019 * 149.95142 * 14 13 12 40 40 H 1.08000 * 126.20966 * 0.03142 * 15 10 9 41 41 H 1.08990 * 109.58621 * 186.60591 * 16 5 4 42 42 H 1.09004 * 109.69937 * 66.25035 * 16 5 4 43 43 H 1.08996 * 109.49437 * 294.68012 * 17 16 5 44 44 H 1.09000 * 109.52019 * 174.60075 * 17 16 5 45 45 H 0.96996 * 120.00499 * 95.02336 * 20 18 17 46 46 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0410 -0.7241 -1.2495 5 7 3.5043 -0.8292 -1.1697 6 6 4.2807 -0.3864 -2.1785 7 8 3.7725 0.1049 -3.1640 8 6 5.7802 -0.5017 -2.0818 9 8 6.3763 0.0319 -3.2659 10 6 7.7362 0.0036 -3.3404 11 6 8.6055 -0.4949 -2.3611 12 7 9.8338 -0.3554 -2.7907 13 7 9.7924 0.2463 -4.0550 14 6 10.9494 0.5859 -4.8870 15 6 8.4884 0.4576 -4.3731 16 6 4.1053 -1.4265 0.0307 17 6 3.5707 -0.6948 1.2659 18 6 2.0408 -0.7231 1.2484 19 1 1.6968 -1.7574 1.2352 20 7 1.5264 -0.0529 2.4453 21 6 1.3957 -0.7494 3.6171 22 1 1.6715 -1.7927 3.6588 23 6 0.9089 -0.1143 4.7513 24 7 0.5724 1.1572 4.7004 25 14 0.7300 -1.0644 6.3496 26 1 -0.6222 -1.6749 6.4139 27 1 1.7590 -2.1336 6.4078 28 1 0.9109 -0.1402 7.4978 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0276 -0.0015 32 1 1.7633 -0.1583 -2.1389 33 1 1.6053 -1.7219 -1.3005 34 1 6.1323 0.0561 -1.2142 35 1 6.0579 -1.5506 -1.9766 36 1 8.3118 -0.9237 -1.4143 37 1 11.2799 1.5980 -4.6539 38 1 11.7591 -0.1159 -4.6873 39 1 10.6698 0.5281 -5.9391 40 1 8.1183 0.9065 -5.2830 41 1 5.1894 -1.3242 -0.0139 42 1 3.8398 -2.4822 0.0880 43 1 3.9157 0.3391 1.2538 44 1 3.9335 -1.1888 2.1673 45 1 1.2785 0.8841 2.4078 46 1 0.2319 1.6009 5.4929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036157025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:13 Heat of formation + Delta-G solvation = 28.224368 kcal Electronic energy + Delta-G solvation = -27077.140866 eV Core-core repulsion = 23197.855835 eV Total energy + Delta-G solvation = -3879.285031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.54057 -40.21852 -38.33384 -37.30169 -34.67276 -33.28164 -32.94921 -31.52183 -30.48591 -29.40659 -28.50730 -26.78580 -25.94043 -24.82751 -22.87079 -21.74090 -21.60045 -21.28528 -19.90641 -18.95038 -18.42189 -17.12489 -16.93936 -16.53907 -16.14365 -15.63672 -15.61433 -14.97401 -14.64375 -14.53788 -14.50261 -14.10525 -13.79201 -13.43868 -13.33985 -13.20031 -13.01675 -12.79357 -12.51627 -12.43854 -12.21290 -11.79119 -11.62059 -11.34924 -11.19947 -10.97267 -10.96323 -10.84297 -10.66822 -10.43554 -10.22125 -9.80651 -9.76363 -9.69744 -9.64683 -8.93595 -8.54463 -8.15723 -6.99704 -5.80282 -3.09260 1.49553 2.01751 2.48211 2.56773 2.62249 3.40387 3.45601 3.47503 3.47595 4.28019 4.40496 4.49432 4.54917 4.75613 4.77548 4.83869 4.90712 5.00763 5.00938 5.19136 5.22371 5.24262 5.30743 5.42758 5.48956 5.53912 5.65698 5.75067 5.91456 5.93913 6.05687 6.11279 6.26095 6.34006 6.40969 6.47882 6.57963 6.59722 6.77519 6.89617 7.01712 7.15098 7.29329 7.41821 7.65748 8.14945 8.37868 9.49340 10.06652 10.41318 11.42076 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019482 B = 0.002411 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.891424 B =11611.178290 C =12630.088457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.122 3.878 5 N -0.603 5.603 6 C 0.518 3.482 7 O -0.527 6.527 8 C 0.050 3.950 9 O -0.279 6.279 10 C -0.027 4.027 11 C -0.005 4.005 12 N -0.272 5.272 13 N -0.372 5.372 14 C 0.108 3.892 15 C 0.023 3.977 16 C 0.104 3.896 17 C -0.153 4.153 18 C 0.184 3.816 19 H 0.049 0.951 20 N -0.720 5.720 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.282 1.282 28 H -0.292 1.292 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.187 0.813 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.183 0.817 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.200 -3.820 -18.292 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C 0.000 4.000 5 N -0.338 5.338 6 C 0.305 3.695 7 O -0.403 6.403 8 C -0.029 4.029 9 O -0.190 6.190 10 C -0.081 4.081 11 C -0.191 4.191 12 N -0.096 5.096 13 N -0.160 5.160 14 C -0.033 4.033 15 C -0.120 4.120 16 C -0.019 4.019 17 C -0.194 4.194 18 C 0.073 3.927 19 H 0.067 0.933 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.208 1.208 28 H -0.218 1.218 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.204 0.796 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.200 0.800 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.218 0.782 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.075 -3.741 -18.648 25.559 hybrid contribution -0.878 -0.133 1.181 1.477 sum 16.197 -3.874 -17.467 24.134 Atomic orbital electron populations 1.21657 0.94028 1.01794 1.01917 1.21754 0.96661 1.00093 0.94522 0.91166 1.21737 0.77773 1.00993 0.99507 1.48064 1.07291 1.60580 1.17837 1.19928 0.87948 0.78531 0.83132 1.90714 1.74976 1.43759 1.30864 1.22421 0.92010 1.00214 0.88299 1.86093 1.14416 1.79607 1.38897 1.18676 0.83933 1.08907 0.96602 1.24089 0.90170 1.03939 1.00912 1.77272 1.21015 1.16708 0.94620 1.48253 1.05136 1.48155 1.14488 1.21847 0.86050 1.02096 0.93265 1.21531 0.83315 1.06364 1.00829 1.21930 0.97279 0.97775 0.84890 1.22707 1.00551 1.00460 0.95717 1.20195 0.90279 0.95763 0.86462 0.93329 1.42411 1.76460 1.11433 1.05762 1.19206 1.36026 0.94070 0.87681 0.91213 1.24739 1.02060 0.96016 0.98082 1.69660 1.49895 1.09460 1.28940 0.86222 0.77782 0.78667 0.83679 1.21769 1.20807 1.21849 0.90714 0.93773 0.93022 0.89260 0.91356 0.89220 0.89445 0.79620 0.90624 0.89190 0.89279 0.80004 0.90758 0.91012 0.92072 0.90379 0.78186 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.03 37.15 0.34 -1.83 16 2 C -0.11 -1.76 2.46 -90.50 -0.22 -1.99 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 4 C 0.12 1.72 5.72 -3.71 -0.02 1.70 16 5 N -0.60 -8.08 2.97 -172.76 -0.51 -8.59 16 6 C 0.52 7.45 7.78 -10.98 -0.09 7.37 16 7 O -0.53 -9.61 15.91 -14.35 -0.23 -9.83 16 8 C 0.05 0.55 3.91 36.01 0.14 0.69 16 9 O -0.28 -3.71 9.76 -40.36 -0.39 -4.11 16 10 C -0.03 -0.31 6.96 -39.83 -0.28 -0.58 16 11 C 0.00 -0.05 11.07 -17.26 -0.19 -0.24 16 12 N -0.27 -3.08 12.57 30.68 0.39 -2.69 16 13 N -0.37 -3.42 4.04 -67.85 -0.27 -3.69 16 14 C 0.11 0.48 11.48 59.84 0.69 1.17 16 15 C 0.02 0.23 11.56 -16.71 -0.19 0.03 16 16 C 0.10 1.22 6.34 -3.70 -0.02 1.20 16 17 C -0.15 -2.38 5.66 -26.61 -0.15 -2.53 16 18 C 0.18 3.32 2.19 -67.89 -0.15 3.17 16 19 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 20 N -0.72 -16.83 4.41 -53.38 -0.24 -17.07 16 21 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 22 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -27.33 13.06 55.49 0.72 -26.61 16 25 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H 0.07 1.40 7.36 -51.93 -0.38 1.02 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.33 7.01 -51.93 -0.36 0.97 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 0.85 7.64 -51.93 -0.40 0.45 16 35 H 0.09 0.74 7.90 -51.93 -0.41 0.33 16 36 H 0.19 1.42 7.69 -52.48 -0.40 1.02 16 37 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.07 0.66 5.93 -51.93 -0.31 0.35 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.38 9.76 7.50 -40.82 -0.31 9.45 16 46 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 377.91 15.07 5.70 5.70 Total: -1.00 -34.56 377.91 -7.45 -42.01 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.19 Total: 6.87 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -0.40 Total: 1.30 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.09 Total: -58.65 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.62 Total: -13.94 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.56 -7.45 -42.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036157025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.235 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds