Wall clock time and date at job start Tue Mar 31 2020 14:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52699 * 2 1 4 4 C 1.53196 * 109.48804 * 239.90760 * 2 1 3 5 5 N 1.46924 * 108.76800 * 185.40124 * 4 2 1 6 6 C 1.34773 * 120.63215 * 233.60116 * 5 4 2 7 7 O 1.21282 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.00001 * 180.02562 * 6 5 4 9 9 O 1.42902 * 109.47155 * 179.97438 * 8 6 5 10 10 C 1.36224 * 116.99936 * 180.02562 * 9 8 6 11 11 C 1.40110 * 126.05395 * 359.69563 * 10 9 8 12 12 N 1.30867 * 108.36152 * 179.81603 * 11 10 9 13 13 N 1.40083 * 108.31978 * 0.44111 * 12 11 10 14 14 C 1.46496 * 126.07778 * 179.75809 * 13 12 11 15 15 C 1.35588 * 126.05125 * 179.97438 * 10 9 8 16 16 C 1.46932 * 118.73828 * 53.61710 * 5 4 2 17 17 C 1.53196 * 108.77384 * 306.39467 * 16 5 4 18 18 C 1.53036 * 109.31536 * 54.63418 * 17 16 5 19 19 H 1.09007 * 109.46211 * 58.63452 * 18 17 16 20 20 N 1.46496 * 109.46261 * 178.61527 * 18 17 16 21 21 C 1.36945 * 119.99718 * 275.02605 * 20 18 17 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 270.00277 * 25 23 21 27 27 H 1.48501 * 109.47062 * 30.00228 * 25 23 21 28 28 H 1.48499 * 109.46981 * 150.00382 * 25 23 21 29 29 H 1.09002 * 109.47271 * 299.92312 * 1 2 3 30 30 H 1.09001 * 109.46821 * 59.91874 * 1 2 3 31 31 H 1.08993 * 109.47267 * 179.91522 * 1 2 3 32 32 H 1.09005 * 109.57902 * 65.62432 * 4 2 1 33 33 H 1.08993 * 109.72026 * 305.26324 * 4 2 1 34 34 H 1.08990 * 109.47106 * 299.99661 * 8 6 5 35 35 H 1.09007 * 109.46881 * 59.99892 * 8 6 5 36 36 H 1.08011 * 125.81926 * 359.97438 * 11 10 9 37 37 H 1.08997 * 109.46904 * 269.95128 * 14 13 12 38 38 H 1.08995 * 109.47385 * 29.95565 * 14 13 12 39 39 H 1.09007 * 109.47019 * 149.95142 * 14 13 12 40 40 H 1.08000 * 126.20966 * 0.03142 * 15 10 9 41 41 H 1.08990 * 109.58621 * 186.60591 * 16 5 4 42 42 H 1.09004 * 109.69937 * 66.25035 * 16 5 4 43 43 H 1.08996 * 109.49437 * 294.68012 * 17 16 5 44 44 H 1.09000 * 109.52019 * 174.60075 * 17 16 5 45 45 H 0.96996 * 120.00499 * 95.02336 * 20 18 17 46 46 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0410 -0.7241 -1.2495 5 7 3.5043 -0.8292 -1.1697 6 6 4.2807 -0.3864 -2.1785 7 8 3.7725 0.1049 -3.1640 8 6 5.7802 -0.5017 -2.0818 9 8 6.3763 0.0319 -3.2659 10 6 7.7362 0.0036 -3.3404 11 6 8.6055 -0.4949 -2.3611 12 7 9.8338 -0.3554 -2.7907 13 7 9.7924 0.2463 -4.0550 14 6 10.9494 0.5859 -4.8870 15 6 8.4884 0.4576 -4.3731 16 6 4.1053 -1.4265 0.0307 17 6 3.5707 -0.6948 1.2659 18 6 2.0408 -0.7231 1.2484 19 1 1.6968 -1.7574 1.2352 20 7 1.5264 -0.0529 2.4453 21 6 1.3957 -0.7494 3.6171 22 1 1.6715 -1.7927 3.6588 23 6 0.9089 -0.1143 4.7513 24 7 0.5724 1.1572 4.7004 25 14 0.7300 -1.0644 6.3496 26 1 -0.6222 -1.6749 6.4139 27 1 1.7590 -2.1336 6.4078 28 1 0.9109 -0.1402 7.4978 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0276 -0.0015 32 1 1.7633 -0.1583 -2.1389 33 1 1.6053 -1.7219 -1.3005 34 1 6.1323 0.0561 -1.2142 35 1 6.0579 -1.5506 -1.9766 36 1 8.3118 -0.9237 -1.4143 37 1 11.2799 1.5980 -4.6539 38 1 11.7591 -0.1159 -4.6873 39 1 10.6698 0.5281 -5.9391 40 1 8.1183 0.9065 -5.2830 41 1 5.1894 -1.3242 -0.0139 42 1 3.8398 -2.4822 0.0880 43 1 3.9157 0.3391 1.2538 44 1 3.9335 -1.1888 2.1673 45 1 1.2785 0.8841 2.4078 46 1 0.2319 1.6009 5.4929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036157025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:12 Heat of formation + Delta-G solvation = 5.334669 kcal Electronic energy + Delta-G solvation = -27078.133437 eV Core-core repulsion = 23197.855835 eV Total energy + Delta-G solvation = -3880.277603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.25733 -41.32908 -39.39235 -38.43719 -36.18007 -34.50723 -33.85559 -33.04870 -31.33700 -30.95656 -29.44512 -27.40820 -27.13760 -26.37180 -24.37612 -23.06333 -22.34862 -22.07794 -21.17771 -20.09042 -19.21286 -19.00369 -17.95156 -17.40211 -17.15041 -16.75487 -16.38772 -16.35848 -15.71249 -15.57817 -15.41259 -15.33790 -15.25731 -14.89654 -14.50680 -14.18003 -13.96815 -13.63035 -13.44870 -13.40295 -13.19247 -13.13681 -12.90069 -12.84717 -12.72917 -12.45018 -12.13714 -12.12601 -12.01612 -11.81964 -11.71402 -11.64530 -11.12307 -10.94950 -10.75074 -10.43395 -9.69897 -8.93950 -8.90536 -7.88987 -5.16343 0.80069 1.35459 1.49075 1.50427 1.51088 1.59069 1.74705 1.76659 2.59121 2.61059 3.38266 3.45035 3.77918 3.81403 3.86406 3.88880 4.02867 4.08287 4.14315 4.17872 4.27421 4.33241 4.42668 4.48566 4.52574 4.59345 4.68748 4.73640 4.75464 4.80751 4.82647 4.86290 5.00098 5.04179 5.18418 5.25066 5.34038 5.43012 5.52829 5.58585 5.66234 5.98897 6.28458 6.32675 6.44176 6.59270 7.06924 7.39014 8.15942 8.38332 9.34600 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019482 B = 0.002411 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.891424 B =11611.178290 C =12630.088457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 H 0.051 0.949 4 C 0.128 3.872 5 N -0.601 5.601 6 C 0.515 3.485 7 O -0.573 6.573 8 C 0.051 3.949 9 O -0.305 6.305 10 C -0.056 4.056 11 C -0.007 4.007 12 N -0.304 5.304 13 N -0.371 5.371 14 C 0.097 3.903 15 C 0.026 3.974 16 C 0.110 3.890 17 C -0.145 4.145 18 C 0.177 3.823 19 H 0.051 0.949 20 N -0.733 5.733 21 C -0.227 4.227 22 H 0.080 0.920 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.967 3.033 26 H -0.292 1.292 27 H -0.266 1.266 28 H -0.302 1.302 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.209 0.791 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.204 0.796 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.370 0.630 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.108 -5.723 -19.338 27.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.120 4.120 3 H 0.070 0.930 4 C 0.005 3.995 5 N -0.335 5.335 6 C 0.303 3.697 7 O -0.452 6.452 8 C -0.027 4.027 9 O -0.217 6.217 10 C -0.110 4.110 11 C -0.192 4.192 12 N -0.128 5.128 13 N -0.159 5.159 14 C -0.042 4.042 15 C -0.119 4.119 16 C -0.012 4.012 17 C -0.186 4.186 18 C 0.069 3.931 19 H 0.069 0.931 20 N -0.371 5.371 21 C -0.359 4.359 22 H 0.098 0.902 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.797 3.203 26 H -0.219 1.219 27 H -0.191 1.191 28 H -0.229 1.229 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.127 0.873 35 H 0.138 0.862 36 H 0.226 0.774 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.134 0.866 40 H 0.221 0.779 41 H 0.130 0.870 42 H 0.112 0.888 43 H 0.064 0.936 44 H 0.090 0.910 45 H 0.201 0.799 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 19.044 -5.702 -19.716 27.998 hybrid contribution -1.430 0.473 1.375 2.039 sum 17.614 -5.229 -18.341 25.961 Atomic orbital electron populations 1.21578 0.94075 1.02080 1.01117 1.21614 0.96613 0.99093 0.94708 0.93033 1.21606 0.78707 1.01510 0.97641 1.48119 1.06919 1.60214 1.18224 1.20543 0.89413 0.77309 0.82397 1.90693 1.76053 1.45764 1.32704 1.22515 0.89313 1.02417 0.88435 1.86034 1.15483 1.80345 1.39882 1.18934 0.83409 1.10797 0.97854 1.24441 0.89685 1.03508 1.01555 1.77220 1.21633 1.18036 0.95956 1.48665 1.05988 1.47118 1.14118 1.22230 0.85022 1.02813 0.94118 1.22014 0.83531 1.05217 1.01178 1.22032 0.99227 0.97975 0.81932 1.22492 0.98136 1.00232 0.97692 1.20465 0.92005 0.95408 0.85263 0.93078 1.42615 1.76898 1.10854 1.06780 1.19607 1.33446 0.94423 0.88376 0.90211 1.25499 1.03401 0.96910 1.01350 1.69825 1.52180 1.11128 1.29196 0.85220 0.77806 0.77500 0.79738 1.21909 1.19108 1.22926 0.94137 0.91895 0.92143 0.90068 0.89424 0.87327 0.86189 0.77442 0.89499 0.88654 0.86649 0.77885 0.87022 0.88778 0.93555 0.91040 0.79874 0.94385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.03 71.98 0.65 -3.50 16 2 C -0.10 -3.17 2.46 -10.71 -0.03 -3.19 16 3 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.13 3.41 5.72 86.36 0.49 3.90 16 5 N -0.60 -14.67 2.97 -818.88 -2.43 -17.11 16 6 C 0.51 13.85 7.78 87.66 0.68 14.53 16 7 O -0.57 -20.57 15.91 16.00 0.25 -20.31 16 8 C 0.05 1.00 3.91 71.24 0.28 1.28 16 9 O -0.31 -7.66 9.76 -77.07 -0.75 -8.41 16 10 C -0.06 -1.19 6.96 22.11 0.15 -1.04 16 11 C -0.01 -0.13 11.07 85.29 0.94 0.82 16 12 N -0.30 -6.38 12.57 -56.84 -0.71 -7.10 16 13 N -0.37 -6.12 4.04 -368.57 -1.49 -7.61 16 14 C 0.10 0.65 11.48 127.77 1.47 2.12 16 15 C 0.03 0.45 11.56 83.45 0.96 1.42 16 16 C 0.11 2.19 6.34 86.36 0.55 2.73 16 17 C -0.14 -4.24 5.66 30.67 0.17 -4.07 16 18 C 0.18 6.25 2.19 45.02 0.10 6.35 16 19 H 0.05 1.80 8.08 -2.38 -0.02 1.78 16 20 N -0.73 -34.60 4.41 -322.81 -1.42 -36.02 16 21 C -0.23 -11.83 9.93 84.03 0.83 -11.00 16 22 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 23 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 24 N -0.97 -58.66 13.06 21.65 0.28 -58.38 16 25 Si 0.97 45.01 29.55 68.60 2.03 47.04 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 28 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 29 H 0.04 1.56 7.36 -2.39 -0.02 1.54 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 2.35 7.01 -2.38 -0.02 2.33 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.11 1.70 7.64 -2.39 -0.02 1.68 16 35 H 0.12 1.54 7.90 -2.38 -0.02 1.52 16 36 H 0.21 2.58 7.69 -2.90 -0.02 2.55 16 37 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.12 0.15 8.14 -2.38 -0.02 0.13 16 40 H 0.20 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.11 1.45 5.93 -2.39 -0.01 1.43 16 42 H 0.09 1.55 8.14 -2.38 -0.02 1.54 16 43 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.37 19.45 7.50 -92.71 -0.70 18.75 16 46 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -77.29 377.91 3.77 -73.52 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.29 Total: 28.00 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 7.73 Total: 6.37 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -5.78 Total: -126.21 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.50 Total: -28.72 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -77.29 3.77 -73.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036157025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.854 kcal (2) G-P(sol) polarization free energy of solvation -77.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds