Wall clock time and date at job start Tue Mar 31 2020 14:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50059 * 2 1 4 4 C 1.53195 * 109.49899 * 120.10022 * 2 1 3 5 5 N 1.47207 * 108.85456 * 174.60016 * 4 2 1 6 6 C 1.34778 * 120.81118 * 126.33789 * 5 4 2 7 7 O 1.21273 * 120.00022 * 0.14435 * 6 5 4 8 8 C 1.50706 * 119.99581 * 180.14557 * 6 5 4 9 9 O 1.42898 * 109.46575 * 179.97438 * 8 6 5 10 10 C 1.36233 * 116.99681 * 179.97438 * 9 8 6 11 11 C 1.40113 * 126.05332 * 0.02562 * 10 9 8 12 12 N 1.30862 * 108.35992 * 179.97438 * 11 10 9 13 13 N 1.40085 * 108.32264 * 0.02562 * 12 11 10 14 14 C 1.46495 * 126.08016 * 180.02562 * 13 12 11 15 15 C 1.35584 * 126.04985 * 179.71686 * 10 9 8 16 16 C 1.46926 * 118.55531 * 306.47735 * 5 4 2 17 17 C 1.53191 * 108.89109 * 53.54119 * 16 5 4 18 18 C 1.53035 * 109.31327 * 305.29292 * 17 16 5 19 19 H 1.09004 * 109.45879 * 181.37450 * 18 17 16 20 20 N 1.46503 * 109.46101 * 301.34464 * 18 17 16 21 21 C 1.36937 * 119.99957 * 275.00292 * 20 18 17 22 22 H 1.07995 * 120.00418 * 0.02562 * 21 20 18 23 23 C 1.38817 * 119.99891 * 179.97438 * 21 20 18 24 24 N 1.31614 * 119.99950 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00129 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47392 * 89.99654 * 25 23 21 27 27 H 1.48496 * 109.47152 * 209.99881 * 25 23 21 28 28 H 1.48512 * 109.46904 * 330.00012 * 25 23 21 29 29 H 1.08991 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46483 * 300.06376 * 1 2 3 31 31 H 1.08994 * 109.46935 * 60.05876 * 1 2 3 32 32 H 1.08996 * 109.58670 * 294.37379 * 4 2 1 33 33 H 1.09002 * 109.58549 * 54.65190 * 4 2 1 34 34 H 1.09001 * 109.46865 * 299.99350 * 8 6 5 35 35 H 1.08994 * 109.47133 * 59.99884 * 8 6 5 36 36 H 1.08001 * 125.81675 * 359.92679 * 11 10 9 37 37 H 1.08994 * 109.47315 * 89.97053 * 14 13 12 38 38 H 1.08998 * 109.47540 * 209.97852 * 14 13 12 39 39 H 1.09010 * 109.46959 * 329.97689 * 14 13 12 40 40 H 1.08002 * 126.21630 * 359.97438 * 15 10 9 41 41 H 1.09002 * 109.58861 * 293.68122 * 16 5 4 42 42 H 1.08996 * 109.58519 * 173.40013 * 16 5 4 43 43 H 1.09003 * 109.49975 * 65.24379 * 17 16 5 44 44 H 1.09004 * 109.49655 * 185.34207 * 17 16 5 45 45 H 0.96994 * 119.99818 * 94.99686 * 20 18 17 46 46 H 0.97003 * 120.00055 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7242 1.2494 5 7 3.5075 -0.8304 1.1711 6 6 4.2864 -0.3881 2.1781 7 8 3.7808 0.1022 3.1654 8 6 5.7857 -0.5029 2.0772 9 8 6.3848 0.0311 3.2595 10 6 7.7451 0.0033 3.3303 11 6 8.6116 -0.4999 2.3510 12 7 9.8412 -0.3540 2.7743 13 7 9.8031 0.2470 4.0391 14 6 10.9623 0.5883 4.8674 15 6 8.5001 0.4631 4.3583 16 6 4.1053 -1.4268 -0.0313 17 6 3.5708 -0.6947 -1.2663 18 6 2.0408 -0.7227 -1.2486 19 1 1.6582 -0.2236 -2.1389 20 7 1.5783 -2.1127 -1.2315 21 6 1.4467 -2.8050 -2.4056 22 1 1.6843 -2.3265 -3.3442 23 6 1.0089 -4.1222 -2.3894 24 7 0.7198 -4.7055 -1.2455 25 14 0.8288 -5.0664 -3.9911 26 1 2.1060 -5.7556 -4.3058 27 1 -0.2554 -6.0718 -3.8537 28 1 0.4926 -4.1223 -5.0871 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5149 0.8895 31 1 -0.3633 0.5129 -0.8905 32 1 1.7638 -0.1587 2.1388 33 1 1.6033 -1.7211 1.2988 34 1 6.0634 -1.5515 1.9706 35 1 6.1353 0.0558 1.2091 36 1 8.3152 -0.9347 1.4079 37 1 11.2909 1.6007 4.6328 38 1 10.6862 0.5307 5.9202 39 1 11.7723 -0.1126 4.6652 40 1 8.1327 0.9169 5.2669 41 1 3.8375 -2.4819 -0.0876 42 1 5.1898 -1.3269 0.0118 43 1 3.9159 0.3392 -1.2540 44 1 3.9333 -1.1891 -2.1675 45 1 1.3653 -2.5426 -0.3885 46 1 0.4143 -5.6261 -1.2341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036157028.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:14 Heat of formation + Delta-G solvation = 9.260748 kcal Electronic energy + Delta-G solvation = -27488.748686 eV Core-core repulsion = 23608.641330 eV Total energy + Delta-G solvation = -3880.107355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.26081 -41.35657 -39.47398 -38.45251 -35.87289 -34.51277 -33.85800 -32.96982 -31.27242 -30.88599 -29.46847 -27.40419 -27.14036 -26.13135 -25.22332 -23.03565 -22.37549 -22.07740 -20.79841 -19.59319 -19.29098 -19.12633 -17.90393 -17.42606 -17.12871 -16.60285 -16.40417 -16.28410 -15.93925 -15.61633 -15.39112 -15.33778 -15.26089 -14.81308 -14.44418 -14.31067 -14.07499 -13.59445 -13.46106 -13.40568 -13.23304 -12.96804 -12.90366 -12.84040 -12.65214 -12.38389 -12.14269 -12.09196 -11.95022 -11.87372 -11.71777 -11.55361 -11.13446 -10.91805 -10.74058 -10.43321 -9.62915 -8.90931 -8.89246 -7.86113 -5.11859 0.79627 1.35961 1.49576 1.51323 1.52355 1.59651 1.74102 1.76608 2.59965 2.62361 3.39146 3.48295 3.77714 3.87469 3.89209 3.90432 4.04222 4.11070 4.13127 4.16082 4.27234 4.34282 4.42378 4.48955 4.54921 4.59577 4.69412 4.73430 4.73691 4.75356 4.87540 4.98324 5.05719 5.17258 5.19303 5.26781 5.32277 5.33674 5.50839 5.63084 5.65662 5.98981 6.31996 6.35911 6.45107 6.58738 7.07184 7.43623 8.20431 8.43510 9.37178 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018112 B = 0.002685 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.607888 B =10427.377039 C =11389.547817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 H 0.087 0.913 4 C 0.125 3.875 5 N -0.596 5.596 6 C 0.514 3.486 7 O -0.574 6.574 8 C 0.054 3.946 9 O -0.304 6.304 10 C -0.057 4.057 11 C -0.007 4.007 12 N -0.303 5.303 13 N -0.370 5.370 14 C 0.097 3.903 15 C 0.027 3.973 16 C 0.114 3.886 17 C -0.143 4.143 18 C 0.170 3.830 19 H 0.048 0.952 20 N -0.725 5.725 21 C -0.223 4.223 22 H 0.076 0.924 23 C -0.074 4.074 24 N -0.969 5.969 25 Si 0.962 3.038 26 H -0.290 1.290 27 H -0.305 1.305 28 H -0.272 1.272 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.207 0.793 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.205 0.795 41 H 0.057 0.943 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.373 0.627 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.753 12.949 8.795 23.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 H 0.105 0.895 4 C 0.003 3.997 5 N -0.329 5.329 6 C 0.303 3.697 7 O -0.454 6.454 8 C -0.024 4.024 9 O -0.216 6.216 10 C -0.111 4.111 11 C -0.193 4.193 12 N -0.127 5.127 13 N -0.158 5.158 14 C -0.042 4.042 15 C -0.118 4.118 16 C -0.008 4.008 17 C -0.183 4.183 18 C 0.061 3.939 19 H 0.066 0.934 20 N -0.366 5.366 21 C -0.355 4.355 22 H 0.094 0.906 23 C -0.266 4.266 24 N -0.621 5.621 25 Si 0.793 3.207 26 H -0.218 1.218 27 H -0.232 1.232 28 H -0.197 1.197 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.126 0.874 35 H 0.135 0.865 36 H 0.223 0.777 37 H 0.107 0.893 38 H 0.133 0.867 39 H 0.113 0.887 40 H 0.222 0.778 41 H 0.076 0.924 42 H 0.127 0.873 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.207 0.793 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 18.671 13.110 9.095 24.560 hybrid contribution -1.473 -1.218 -0.615 2.008 sum 17.198 11.893 8.479 22.564 Atomic orbital electron populations 1.21606 0.94164 1.01499 1.01758 1.21627 0.96523 0.99385 0.94219 0.89483 1.21548 0.78899 1.00344 0.98950 1.48116 1.06752 1.59751 1.18294 1.20530 0.89404 0.77504 0.82277 1.90674 1.76199 1.46301 1.32191 1.22459 0.89230 1.01946 0.88744 1.86035 1.15491 1.80163 1.39929 1.18959 0.83377 1.10640 0.98103 1.24414 0.89757 1.03455 1.01634 1.77215 1.21474 1.18066 0.95983 1.48675 1.06014 1.47073 1.14087 1.22235 0.84881 1.02865 0.94187 1.22008 0.83504 1.05152 1.01132 1.21802 0.98465 0.97385 0.83138 1.22404 0.98094 1.00456 0.97376 1.20470 0.92608 0.85097 0.95687 0.93368 1.42599 1.79138 1.09286 1.05565 1.19564 1.34463 0.93747 0.87737 0.90582 1.25368 1.03761 0.98523 0.98961 1.69798 1.54029 1.12785 1.25469 0.85303 0.76585 0.78442 0.80392 1.21778 1.23192 1.19721 0.94144 0.91828 0.92132 0.90086 0.92911 0.87419 0.86491 0.77664 0.89285 0.86712 0.88720 0.77788 0.92440 0.87268 0.90273 0.91037 0.79321 0.94459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 9.05 71.98 0.65 -3.45 16 2 C -0.10 -3.00 2.67 -10.72 -0.03 -3.03 16 3 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.13 4.15 5.43 86.31 0.47 4.62 16 5 N -0.60 -17.95 2.98 -818.19 -2.44 -20.39 16 6 C 0.51 15.87 7.78 87.66 0.68 16.55 16 7 O -0.57 -22.43 15.93 16.03 0.26 -22.18 16 8 C 0.05 1.24 3.91 71.24 0.28 1.52 16 9 O -0.30 -8.28 9.76 -77.17 -0.75 -9.04 16 10 C -0.06 -1.30 6.96 22.11 0.15 -1.15 16 11 C -0.01 -0.15 11.07 85.29 0.94 0.79 16 12 N -0.30 -6.73 12.57 -56.85 -0.71 -7.45 16 13 N -0.37 -6.48 4.04 -368.57 -1.49 -7.97 16 14 C 0.10 0.72 11.48 127.77 1.47 2.18 16 15 C 0.03 0.51 11.56 83.45 0.96 1.48 16 16 C 0.11 3.13 6.07 86.36 0.52 3.65 16 17 C -0.14 -4.04 5.78 30.67 0.18 -3.86 16 18 C 0.17 5.87 2.53 45.02 0.11 5.98 16 19 H 0.05 1.71 8.08 -2.38 -0.02 1.69 16 20 N -0.72 -32.42 3.64 -322.81 -1.17 -33.60 16 21 C -0.22 -11.31 9.93 84.03 0.83 -10.47 16 22 H 0.08 3.70 7.83 -2.91 -0.02 3.68 16 23 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 24 N -0.97 -57.00 13.06 21.65 0.28 -56.72 16 25 Si 0.96 44.54 29.55 68.60 2.03 46.57 16 26 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 27 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 28 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 29 H 0.04 1.50 7.54 -2.39 -0.02 1.48 16 30 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.08 2.75 7.02 -2.39 -0.02 2.73 16 33 H 0.05 2.02 6.65 -2.39 -0.02 2.00 16 34 H 0.11 2.03 7.90 -2.39 -0.02 2.01 16 35 H 0.12 1.95 7.65 -2.39 -0.02 1.93 16 36 H 0.21 3.02 7.69 -2.91 -0.02 3.00 16 37 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.21 2.66 8.06 -2.91 -0.02 2.64 16 41 H 0.06 1.98 7.74 -2.39 -0.02 1.97 16 42 H 0.11 2.07 5.93 -2.39 -0.01 2.06 16 43 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.37 18.44 5.93 -92.71 -0.55 17.89 16 46 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -73.75 374.04 4.13 -69.63 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.44 Total: 29.90 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 7.70 Total: 11.25 kcal Atomic # 7 Polarization: -120.59 SS G_CDS: -5.54 Total: -126.13 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.50 Total: -31.21 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -73.75 4.13 -69.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036157028.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.888 kcal (2) G-P(sol) polarization free energy of solvation -73.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds