Wall clock time and date at job start Tue Mar 31 2020 14:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.49517 * 2 1 4 4 C 1.53193 * 109.49635 * 239.93768 * 2 1 3 5 5 N 1.46929 * 108.77399 * 185.37964 * 4 2 1 6 6 C 1.34768 * 120.63103 * 233.58445 * 5 4 2 7 7 O 1.21283 * 120.00373 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99911 * 179.97438 * 6 5 4 9 9 O 1.42901 * 109.46992 * 179.97438 * 8 6 5 10 10 C 1.36235 * 116.99793 * 180.02562 * 9 8 6 11 11 C 1.40112 * 126.05403 * 0.02562 * 10 9 8 12 12 N 1.30863 * 108.35754 * 179.97438 * 11 10 9 13 13 N 1.40078 * 108.32267 * 0.02562 * 12 11 10 14 14 C 1.46504 * 126.07712 * 180.02562 * 13 12 11 15 15 C 1.35589 * 126.04918 * 179.71253 * 10 9 8 16 16 C 1.46928 * 118.73682 * 53.85670 * 5 4 2 17 17 C 1.53628 * 108.54695 * 306.09552 * 16 5 4 18 18 C 1.53036 * 109.52349 * 120.07794 * 2 1 3 19 19 H 1.09002 * 109.46451 * 301.34430 * 18 2 1 20 20 N 1.46502 * 109.45710 * 61.31420 * 18 2 1 21 21 C 1.36942 * 119.99802 * 204.99535 * 20 18 2 22 22 H 1.07995 * 120.00318 * 0.02562 * 21 20 18 23 23 C 1.38813 * 119.99682 * 179.97438 * 21 20 18 24 24 N 1.31622 * 120.00276 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00080 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47242 * 90.00184 * 25 23 21 27 27 H 1.48499 * 109.47672 * 210.00561 * 25 23 21 28 28 H 1.48507 * 109.46965 * 330.00339 * 25 23 21 29 29 H 1.08995 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46998 * 300.06764 * 1 2 3 31 31 H 1.09000 * 109.47356 * 60.06603 * 1 2 3 32 32 H 1.09000 * 109.58718 * 65.59226 * 4 2 1 33 33 H 1.08998 * 109.58353 * 305.16211 * 4 2 1 34 34 H 1.09004 * 109.46789 * 60.00127 * 8 6 5 35 35 H 1.08999 * 109.47285 * 299.99985 * 8 6 5 36 36 H 1.08001 * 125.81732 * 0.02562 * 11 10 9 37 37 H 1.09008 * 109.46751 * 89.97736 * 14 13 12 38 38 H 1.08993 * 109.47177 * 209.97194 * 14 13 12 39 39 H 1.09000 * 109.46994 * 329.97707 * 14 13 12 40 40 H 1.07999 * 126.21012 * 0.02562 * 15 10 9 41 41 H 1.09001 * 109.58233 * 65.92630 * 16 5 4 42 42 H 1.08995 * 109.58468 * 186.35219 * 16 5 4 43 43 H 1.08993 * 109.62979 * 294.86791 * 17 16 5 44 44 H 1.09000 * 109.43090 * 174.72129 * 17 16 5 45 45 H 0.97005 * 120.00161 * 25.00328 * 20 18 2 46 46 H 0.97001 * 120.00175 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5047 -0.8280 -1.1702 6 6 4.2807 -0.3849 -2.1791 7 8 3.7722 0.1056 -3.1649 8 6 5.7803 -0.4987 -2.0822 9 8 6.3760 0.0351 -3.2664 10 6 7.7360 0.0081 -3.3407 11 6 8.6054 -0.4951 -2.3639 12 7 9.8338 -0.3494 -2.7910 13 7 9.7920 0.2525 -4.0552 14 6 10.9487 0.5931 -4.8873 15 6 8.4876 0.4579 -4.3756 16 6 4.1057 -1.4305 0.0275 17 6 3.5715 -0.6941 1.2654 18 6 2.0415 -0.7229 1.2481 19 1 1.6590 -0.2245 2.1389 20 7 1.5796 -2.1131 1.2306 21 6 1.4501 -2.8064 2.4044 22 1 1.6880 -2.3283 3.3431 23 6 1.0120 -4.1235 2.3877 24 7 0.7215 -4.7061 1.2438 25 14 0.8346 -5.0691 3.9889 26 1 -0.5370 -4.8806 4.5258 27 1 1.0746 -6.5133 3.7402 28 1 1.8254 -4.5652 4.9737 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3634 0.5128 -0.8906 32 1 1.7632 -0.1576 -2.1390 33 1 1.6057 -1.7214 -1.2982 34 1 6.0590 -1.5472 -1.9766 35 1 6.1318 0.0598 -1.2147 36 1 8.3118 -0.9299 -1.4199 37 1 11.1924 -0.2503 -5.5335 38 1 10.7123 1.4633 -5.4994 39 1 11.8021 0.8194 -4.2480 40 1 8.1170 0.9018 -5.2878 41 1 3.8350 -2.4850 0.0811 42 1 5.1902 -1.3314 -0.0187 43 1 3.9161 0.3399 1.2534 44 1 3.9346 -1.1888 2.1663 45 1 1.3656 -2.5425 0.3875 46 1 0.4150 -5.6263 1.2322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036157032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:18 Heat of formation + Delta-G solvation = 30.543679 kcal Electronic energy + Delta-G solvation = -27490.374872 eV Core-core repulsion = 23611.190414 eV Total energy + Delta-G solvation = -3879.184458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47707 -40.11008 -38.31541 -37.24994 -34.32627 -33.22649 -32.90682 -31.42887 -30.39732 -29.20524 -28.47418 -26.72567 -25.86443 -24.69145 -23.50390 -21.69835 -21.58588 -21.23230 -19.59304 -18.34863 -18.20387 -17.37545 -16.74126 -16.45329 -16.01385 -15.55552 -15.51333 -14.81491 -14.60668 -14.52223 -14.28547 -14.13382 -13.96251 -13.32713 -13.30552 -13.09009 -12.96363 -12.71154 -12.56424 -12.35944 -12.19034 -11.59301 -11.40295 -11.26135 -11.20433 -10.93342 -10.90772 -10.82371 -10.51351 -10.50378 -10.21308 -9.86644 -9.70638 -9.58488 -9.54231 -8.96148 -8.28171 -8.08838 -7.00816 -5.81753 -3.10420 1.55081 2.08334 2.55302 2.73244 2.74550 3.39781 3.45548 3.47100 3.61667 4.37256 4.48868 4.55015 4.59615 4.79515 4.85375 4.93896 5.03812 5.04320 5.15285 5.25503 5.29236 5.34752 5.47009 5.49413 5.54850 5.69046 5.77495 5.89501 5.99263 6.04270 6.05870 6.21763 6.28487 6.37079 6.48222 6.57891 6.64599 6.65512 6.73100 6.89639 6.97251 7.23651 7.35877 7.62733 7.66190 8.31862 8.36725 9.48432 10.04856 10.39869 11.40552 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018123 B = 0.002685 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.586405 B =10425.606188 C =11386.473628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.121 3.879 5 N -0.598 5.598 6 C 0.516 3.484 7 O -0.532 6.532 8 C 0.050 3.950 9 O -0.279 6.279 10 C -0.025 4.025 11 C -0.005 4.005 12 N -0.273 5.273 13 N -0.373 5.373 14 C 0.109 3.891 15 C 0.022 3.978 16 C 0.111 3.889 17 C -0.150 4.150 18 C 0.178 3.822 19 H 0.052 0.948 20 N -0.719 5.719 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.283 1.283 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.187 0.813 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.183 0.817 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.075 0.925 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.685 11.360 -9.168 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.001 4.001 5 N -0.332 5.332 6 C 0.303 3.697 7 O -0.409 6.409 8 C -0.029 4.029 9 O -0.190 6.190 10 C -0.080 4.080 11 C -0.191 4.191 12 N -0.097 5.097 13 N -0.161 5.161 14 C -0.032 4.032 15 C -0.122 4.122 16 C -0.012 4.012 17 C -0.191 4.191 18 C 0.067 3.933 19 H 0.070 0.930 20 N -0.361 5.361 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.209 1.209 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.204 0.796 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.200 0.800 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.565 11.479 -9.502 22.281 hybrid contribution -0.900 -0.839 0.809 1.472 sum 15.665 10.640 -8.693 20.837 Atomic orbital electron populations 1.21667 0.94159 1.03223 1.00481 1.21711 0.96560 0.98878 0.95687 0.91565 1.21676 0.77937 1.01739 0.98729 1.48031 1.07247 1.59858 1.18052 1.19892 0.87872 0.78734 0.83231 1.90700 1.74978 1.44419 1.30802 1.22426 0.92193 1.00278 0.87977 1.86097 1.14312 1.79551 1.39055 1.18696 0.84031 1.08727 0.96525 1.24098 0.90166 1.03771 1.01057 1.77262 1.21045 1.16663 0.94700 1.48244 1.05102 1.48399 1.14371 1.21837 0.86127 1.01565 0.93684 1.21519 0.83313 1.06753 1.00589 1.21895 0.96045 0.99331 0.83894 1.22607 1.00591 0.98605 0.97314 1.20219 0.90739 0.87389 0.94911 0.93040 1.42486 1.79007 1.07666 1.06963 1.19212 1.37296 0.93831 0.86573 0.91238 1.24708 1.02249 0.97213 0.96590 1.69646 1.51605 1.13112 1.23654 0.86241 0.77766 0.79376 0.83067 1.21831 1.21898 1.20851 0.91012 0.92778 0.93726 0.89670 0.90442 0.89372 0.89454 0.79609 0.90696 0.89307 0.89214 0.80033 0.89258 0.91451 0.93171 0.90607 0.78079 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.06 37.16 0.34 -1.83 16 2 C -0.11 -1.73 2.67 -90.50 -0.24 -1.97 16 3 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 4 C 0.12 2.01 5.42 -3.71 -0.02 1.99 16 5 N -0.60 -9.35 2.97 -172.50 -0.51 -9.86 16 6 C 0.52 8.29 7.77 -10.99 -0.09 8.21 16 7 O -0.53 -10.46 15.91 -14.36 -0.23 -10.69 16 8 C 0.05 0.63 3.91 36.01 0.14 0.77 16 9 O -0.28 -4.01 9.76 -40.40 -0.39 -4.40 16 10 C -0.03 -0.31 6.96 -39.83 -0.28 -0.59 16 11 C 0.00 -0.05 11.07 -17.26 -0.19 -0.24 16 12 N -0.27 -3.26 12.57 30.68 0.39 -2.88 16 13 N -0.37 -3.64 4.04 -67.84 -0.27 -3.92 16 14 C 0.11 0.53 11.48 59.85 0.69 1.22 16 15 C 0.02 0.23 11.56 -16.71 -0.19 0.03 16 16 C 0.11 1.62 6.11 -3.48 -0.02 1.60 16 17 C -0.15 -2.32 5.80 -26.38 -0.15 -2.47 16 18 C 0.18 3.18 2.53 -67.89 -0.17 3.01 16 19 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 20 N -0.72 -15.99 3.64 -53.38 -0.19 -16.19 16 21 C -0.24 -6.05 9.93 -15.06 -0.15 -6.20 16 22 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 23 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -26.64 13.06 55.49 0.72 -25.92 16 25 Si 0.90 21.46 29.55 -169.99 -5.02 16.44 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H 0.07 1.31 7.54 -51.93 -0.39 0.92 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.44 7.01 -51.93 -0.36 1.07 16 33 H 0.08 1.42 6.64 -51.93 -0.34 1.07 16 34 H 0.09 0.95 7.89 -51.93 -0.41 0.54 16 35 H 0.09 0.89 7.66 -51.93 -0.40 0.50 16 36 H 0.19 1.61 7.69 -52.49 -0.40 1.20 16 37 H 0.07 0.29 8.14 -51.92 -0.42 -0.14 16 38 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.09 1.56 7.74 -51.93 -0.40 1.16 16 42 H 0.07 0.76 5.93 -51.93 -0.31 0.45 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.38 9.20 5.93 -40.82 -0.24 8.96 16 46 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 374.00 15.07 5.64 5.64 Total: -1.00 -33.29 374.00 -7.35 -40.64 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.03 Total: 8.01 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -0.44 Total: 3.13 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.13 Total: -58.76 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.62 Total: -15.09 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.29 -7.35 -40.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036157032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.182 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds