Wall clock time and date at job start Tue Mar 31 2020 14:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.49517 * 2 1 4 4 C 1.53193 * 109.49635 * 239.93768 * 2 1 3 5 5 N 1.46929 * 108.77399 * 185.37964 * 4 2 1 6 6 C 1.34768 * 120.63103 * 233.58445 * 5 4 2 7 7 O 1.21283 * 120.00373 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99911 * 179.97438 * 6 5 4 9 9 O 1.42901 * 109.46992 * 179.97438 * 8 6 5 10 10 C 1.36235 * 116.99793 * 180.02562 * 9 8 6 11 11 C 1.40112 * 126.05403 * 0.02562 * 10 9 8 12 12 N 1.30863 * 108.35754 * 179.97438 * 11 10 9 13 13 N 1.40078 * 108.32267 * 0.02562 * 12 11 10 14 14 C 1.46504 * 126.07712 * 180.02562 * 13 12 11 15 15 C 1.35589 * 126.04918 * 179.71253 * 10 9 8 16 16 C 1.46928 * 118.73682 * 53.85670 * 5 4 2 17 17 C 1.53628 * 108.54695 * 306.09552 * 16 5 4 18 18 C 1.53036 * 109.52349 * 120.07794 * 2 1 3 19 19 H 1.09002 * 109.46451 * 301.34430 * 18 2 1 20 20 N 1.46502 * 109.45710 * 61.31420 * 18 2 1 21 21 C 1.36942 * 119.99802 * 204.99535 * 20 18 2 22 22 H 1.07995 * 120.00318 * 0.02562 * 21 20 18 23 23 C 1.38813 * 119.99682 * 179.97438 * 21 20 18 24 24 N 1.31622 * 120.00276 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00080 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47242 * 90.00184 * 25 23 21 27 27 H 1.48499 * 109.47672 * 210.00561 * 25 23 21 28 28 H 1.48507 * 109.46965 * 330.00339 * 25 23 21 29 29 H 1.08995 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46998 * 300.06764 * 1 2 3 31 31 H 1.09000 * 109.47356 * 60.06603 * 1 2 3 32 32 H 1.09000 * 109.58718 * 65.59226 * 4 2 1 33 33 H 1.08998 * 109.58353 * 305.16211 * 4 2 1 34 34 H 1.09004 * 109.46789 * 60.00127 * 8 6 5 35 35 H 1.08999 * 109.47285 * 299.99985 * 8 6 5 36 36 H 1.08001 * 125.81732 * 0.02562 * 11 10 9 37 37 H 1.09008 * 109.46751 * 89.97736 * 14 13 12 38 38 H 1.08993 * 109.47177 * 209.97194 * 14 13 12 39 39 H 1.09000 * 109.46994 * 329.97707 * 14 13 12 40 40 H 1.07999 * 126.21012 * 0.02562 * 15 10 9 41 41 H 1.09001 * 109.58233 * 65.92630 * 16 5 4 42 42 H 1.08995 * 109.58468 * 186.35219 * 16 5 4 43 43 H 1.08993 * 109.62979 * 294.86791 * 17 16 5 44 44 H 1.09000 * 109.43090 * 174.72129 * 17 16 5 45 45 H 0.97005 * 120.00161 * 25.00328 * 20 18 2 46 46 H 0.97001 * 120.00175 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5047 -0.8280 -1.1702 6 6 4.2807 -0.3849 -2.1791 7 8 3.7722 0.1056 -3.1649 8 6 5.7803 -0.4987 -2.0822 9 8 6.3760 0.0351 -3.2664 10 6 7.7360 0.0081 -3.3407 11 6 8.6054 -0.4951 -2.3639 12 7 9.8338 -0.3494 -2.7910 13 7 9.7920 0.2525 -4.0552 14 6 10.9487 0.5931 -4.8873 15 6 8.4876 0.4579 -4.3756 16 6 4.1057 -1.4305 0.0275 17 6 3.5715 -0.6941 1.2654 18 6 2.0415 -0.7229 1.2481 19 1 1.6590 -0.2245 2.1389 20 7 1.5796 -2.1131 1.2306 21 6 1.4501 -2.8064 2.4044 22 1 1.6880 -2.3283 3.3431 23 6 1.0120 -4.1235 2.3877 24 7 0.7215 -4.7061 1.2438 25 14 0.8346 -5.0691 3.9889 26 1 -0.5370 -4.8806 4.5258 27 1 1.0746 -6.5133 3.7402 28 1 1.8254 -4.5652 4.9737 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3634 0.5128 -0.8906 32 1 1.7632 -0.1576 -2.1390 33 1 1.6057 -1.7214 -1.2982 34 1 6.0590 -1.5472 -1.9766 35 1 6.1318 0.0598 -1.2147 36 1 8.3118 -0.9299 -1.4199 37 1 11.1924 -0.2503 -5.5335 38 1 10.7123 1.4633 -5.4994 39 1 11.8021 0.8194 -4.2480 40 1 8.1170 0.9018 -5.2878 41 1 3.8350 -2.4850 0.0811 42 1 5.1902 -1.3314 -0.0187 43 1 3.9161 0.3399 1.2534 44 1 3.9346 -1.1888 2.1663 45 1 1.3656 -2.5425 0.3875 46 1 0.4150 -5.6263 1.2322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036157032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:17 Heat of formation + Delta-G solvation = 9.345832 kcal Electronic energy + Delta-G solvation = -27491.294080 eV Core-core repulsion = 23611.190414 eV Total energy + Delta-G solvation = -3880.103666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.26089 -41.36612 -39.46959 -38.44932 -35.87452 -34.50966 -33.85689 -32.96160 -31.27019 -30.87493 -29.47196 -27.40462 -27.14032 -26.12278 -25.22660 -23.03837 -22.37389 -22.07650 -20.79578 -19.59592 -19.29188 -19.12596 -17.90664 -17.42470 -17.12945 -16.60375 -16.40737 -16.28187 -15.93516 -15.61869 -15.38516 -15.33586 -15.25740 -14.81330 -14.44765 -14.30621 -14.06546 -13.59266 -13.46912 -13.40386 -13.22845 -12.97234 -12.90425 -12.83498 -12.65223 -12.38424 -12.14256 -12.09231 -11.94308 -11.87796 -11.71707 -11.55415 -11.13145 -10.91997 -10.74286 -10.43286 -9.62453 -8.90853 -8.89184 -7.86101 -5.11892 0.79703 1.36278 1.49574 1.51281 1.52381 1.59619 1.74169 1.77073 2.60209 2.62411 3.39163 3.48305 3.77841 3.87563 3.89394 3.90622 4.04536 4.11203 4.13156 4.16185 4.27319 4.34153 4.42088 4.48790 4.54857 4.59674 4.69493 4.73506 4.73800 4.75403 4.87507 4.98147 5.05998 5.17264 5.19463 5.26918 5.32347 5.33981 5.50789 5.63154 5.65767 5.99020 6.32011 6.35930 6.45149 6.58845 7.07368 7.43599 8.20416 8.43441 9.37174 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018123 B = 0.002685 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.586405 B =10425.606188 C =11386.473628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 H 0.087 0.913 4 C 0.125 3.875 5 N -0.596 5.596 6 C 0.514 3.486 7 O -0.574 6.574 8 C 0.054 3.946 9 O -0.304 6.304 10 C -0.057 4.057 11 C -0.007 4.007 12 N -0.303 5.303 13 N -0.370 5.370 14 C 0.098 3.902 15 C 0.027 3.973 16 C 0.114 3.886 17 C -0.142 4.142 18 C 0.170 3.830 19 H 0.048 0.952 20 N -0.725 5.725 21 C -0.223 4.223 22 H 0.076 0.924 23 C -0.074 4.074 24 N -0.969 5.969 25 Si 0.962 3.038 26 H -0.295 1.295 27 H -0.303 1.303 28 H -0.269 1.269 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.207 0.793 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.205 0.795 41 H 0.058 0.942 42 H 0.110 0.890 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.373 0.627 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.832 13.063 -8.766 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 H 0.105 0.895 4 C 0.002 3.998 5 N -0.329 5.329 6 C 0.302 3.698 7 O -0.454 6.454 8 C -0.024 4.024 9 O -0.216 6.216 10 C -0.111 4.111 11 C -0.193 4.193 12 N -0.127 5.127 13 N -0.158 5.158 14 C -0.042 4.042 15 C -0.118 4.118 16 C -0.008 4.008 17 C -0.183 4.183 18 C 0.061 3.939 19 H 0.066 0.934 20 N -0.366 5.366 21 C -0.355 4.355 22 H 0.094 0.906 23 C -0.266 4.266 24 N -0.621 5.621 25 Si 0.793 3.207 26 H -0.223 1.223 27 H -0.230 1.230 28 H -0.194 1.194 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.126 0.874 35 H 0.135 0.865 36 H 0.223 0.777 37 H 0.105 0.895 38 H 0.134 0.866 39 H 0.114 0.886 40 H 0.222 0.778 41 H 0.076 0.924 42 H 0.128 0.872 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.207 0.793 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 18.769 13.226 -9.064 24.685 hybrid contribution -1.516 -1.251 0.597 2.054 sum 17.253 11.975 -8.467 22.644 Atomic orbital electron populations 1.21607 0.94194 1.01484 1.01751 1.21630 0.96500 0.99392 0.94234 0.89490 1.21507 0.78990 1.00325 0.98960 1.48057 1.06758 1.59595 1.18450 1.20539 0.89442 0.77537 0.82249 1.90677 1.76070 1.46332 1.32292 1.22461 0.89277 1.01937 0.88714 1.86036 1.15540 1.80183 1.39862 1.18961 0.83385 1.10839 0.97894 1.24415 0.89753 1.03419 1.01671 1.77213 1.21537 1.17913 0.96080 1.48673 1.05978 1.47207 1.13983 1.22237 0.84986 1.03224 0.93718 1.22008 0.83510 1.05443 1.00847 1.21905 0.98424 0.97285 0.83151 1.22478 0.98059 1.00406 0.97347 1.20471 0.92630 0.85083 0.95681 0.93376 1.42605 1.79147 1.09263 1.05582 1.19567 1.34463 0.93715 0.87746 0.90571 1.25369 1.03771 0.98527 0.98955 1.69800 1.53985 1.12859 1.25451 0.85304 0.77550 0.77551 0.80330 1.22284 1.23024 1.19378 0.94165 0.92130 0.91846 0.90045 0.92955 0.87433 0.86468 0.77657 0.89451 0.86630 0.88639 0.77792 0.92388 0.87215 0.90245 0.91099 0.79322 0.94462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.06 71.98 0.65 -3.46 16 2 C -0.10 -3.00 2.67 -10.72 -0.03 -3.03 16 3 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 4 C 0.12 4.14 5.42 86.36 0.47 4.61 16 5 N -0.60 -17.91 2.97 -818.06 -2.43 -20.34 16 6 C 0.51 15.83 7.77 87.66 0.68 16.51 16 7 O -0.57 -22.42 15.91 16.00 0.25 -22.16 16 8 C 0.05 1.23 3.91 71.24 0.28 1.51 16 9 O -0.30 -8.28 9.76 -77.19 -0.75 -9.03 16 10 C -0.06 -1.30 6.96 22.11 0.15 -1.15 16 11 C -0.01 -0.15 11.07 85.29 0.94 0.79 16 12 N -0.30 -6.73 12.57 -56.85 -0.71 -7.44 16 13 N -0.37 -6.48 4.04 -368.55 -1.49 -7.96 16 14 C 0.10 0.72 11.48 127.77 1.47 2.18 16 15 C 0.03 0.51 11.56 83.45 0.96 1.47 16 16 C 0.11 3.13 6.11 86.51 0.53 3.66 16 17 C -0.14 -4.03 5.80 30.82 0.18 -3.85 16 18 C 0.17 5.87 2.53 45.02 0.11 5.98 16 19 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 20 N -0.72 -32.43 3.64 -322.81 -1.17 -33.60 16 21 C -0.22 -11.30 9.93 84.03 0.83 -10.46 16 22 H 0.08 3.71 7.83 -2.91 -0.02 3.68 16 23 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 24 N -0.97 -57.02 13.06 21.65 0.28 -56.74 16 25 Si 0.96 44.54 29.55 68.60 2.03 46.57 16 26 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 27 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 28 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 29 H 0.04 1.50 7.54 -2.39 -0.02 1.48 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 2.76 7.01 -2.39 -0.02 2.75 16 33 H 0.05 2.00 6.64 -2.39 -0.02 1.98 16 34 H 0.11 2.02 7.89 -2.39 -0.02 2.00 16 35 H 0.12 1.95 7.66 -2.39 -0.02 1.93 16 36 H 0.21 3.01 7.69 -2.91 -0.02 2.99 16 37 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 38 H 0.12 0.22 8.14 -2.39 -0.02 0.21 16 39 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.21 2.66 8.06 -2.91 -0.02 2.64 16 41 H 0.06 2.00 7.74 -2.39 -0.02 1.98 16 42 H 0.11 2.08 5.93 -2.39 -0.01 2.06 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.37 18.44 5.93 -92.70 -0.55 17.89 16 46 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -73.79 374.00 4.15 -69.64 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.44 Total: 29.86 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 7.70 Total: 11.21 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -5.52 Total: -126.09 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.50 Total: -31.19 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -73.79 4.15 -69.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036157032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.988 kcal (2) G-P(sol) polarization free energy of solvation -73.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds