Wall clock time and date at job start Tue Mar 31 2020 14:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35357 * 116.99711 * 2 1 4 4 C 1.38996 * 126.40267 * 273.25173 * 3 2 1 5 5 C 1.46918 * 126.50147 * 0.02562 * 4 3 2 6 6 O 1.21667 * 120.00371 * 307.18798 * 5 4 3 7 7 N 1.34777 * 119.99716 * 127.17969 * 5 4 3 8 8 C 1.46931 * 120.63190 * 3.30845 * 7 5 4 9 9 C 1.52758 * 109.00625 * 233.57941 * 8 7 5 10 10 C 1.53037 * 109.38426 * 305.58713 * 9 8 7 11 11 H 1.09004 * 109.45820 * 181.26612 * 10 9 8 12 12 N 1.46501 * 109.46358 * 301.21784 * 10 9 8 13 13 C 1.36936 * 120.00152 * 275.07100 * 12 10 9 14 14 H 1.07993 * 119.99906 * 359.97438 * 13 12 10 15 15 C 1.38817 * 119.99536 * 179.97438 * 13 12 10 16 16 N 1.31618 * 119.99449 * 179.97438 * 15 13 12 17 17 Si 1.86792 * 120.00275 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47715 * 89.99467 * 17 15 13 19 19 H 1.48504 * 109.47041 * 209.99351 * 17 15 13 20 20 H 1.48505 * 109.47171 * 329.99040 * 17 15 13 21 21 C 1.53031 * 109.53745 * 61.24518 * 10 9 8 22 22 H 1.08995 * 109.50350 * 58.58334 * 21 10 9 23 23 C 1.53000 * 109.49827 * 178.68153 * 21 10 9 24 24 C 1.46925 * 120.62969 * 183.58471 * 7 5 4 25 25 C 1.41470 * 107.00223 * 180.02562 * 4 3 2 26 26 N 1.30319 * 108.13590 * 359.97438 * 25 4 3 27 27 N 1.34656 * 126.40353 * 93.25604 * 3 2 1 28 28 C 1.46500 * 125.73881 * 0.26102 * 27 3 2 29 29 H 1.08998 * 109.46832 * 295.01746 * 1 2 3 30 30 H 1.08999 * 109.47034 * 55.01729 * 1 2 3 31 31 H 1.09000 * 109.46574 * 175.01882 * 1 2 3 32 32 H 1.08999 * 109.58440 * 353.41949 * 8 7 5 33 33 H 1.09004 * 109.58342 * 113.83860 * 8 7 5 34 34 H 1.09003 * 109.55863 * 185.55015 * 9 8 7 35 35 H 1.09002 * 109.38555 * 65.51874 * 9 8 7 36 36 H 0.96997 * 119.99397 * 95.06642 * 12 10 9 37 37 H 0.97005 * 119.99555 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.47160 * 179.83294 * 23 21 10 39 39 H 1.08997 * 109.47500 * 299.83638 * 23 21 10 40 40 H 1.09004 * 109.47145 * 59.83423 * 23 21 10 41 41 H 1.08998 * 109.58787 * 246.16141 * 24 7 5 42 42 H 1.09000 * 109.58551 * 6.44115 * 24 7 5 43 43 H 1.07995 * 125.92951 * 180.02562 * 25 4 3 44 44 H 1.09000 * 109.46734 * 264.74277 * 28 27 3 45 45 H 1.09000 * 109.47614 * 24.75040 * 28 27 3 46 46 H 1.09000 * 109.46943 * 144.74914 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0435 1.2061 0.0000 4 6 2.3614 1.9699 -1.1169 5 6 2.0939 1.6214 -2.5189 6 8 2.4627 0.5493 -2.9604 7 7 1.4398 2.4894 -3.3159 8 6 1.0518 3.8164 -2.8184 9 6 -0.4450 4.0160 -3.0490 10 6 -0.7675 3.7792 -4.5261 11 1 -1.8316 3.9433 -4.6963 12 7 0.0075 4.7101 -5.3502 13 6 -0.4648 5.9740 -5.5838 14 1 -1.4087 6.2845 -5.1607 15 6 0.2698 6.8562 -6.3642 16 7 -0.1843 8.0709 -6.5891 17 14 1.9021 6.3188 -7.0965 18 1 1.6706 5.7174 -8.4343 19 1 2.7959 7.4971 -7.2315 20 1 2.5377 5.3149 -6.2057 21 6 -0.4064 2.3410 -4.9046 22 1 -0.9643 1.6480 -4.2749 23 6 -0.7596 2.0953 -6.3728 24 6 1.0959 2.1244 -4.6969 25 6 2.9914 3.1465 -0.6478 26 7 3.0440 3.0874 0.6530 27 7 2.4611 1.8902 1.0820 28 6 2.3326 1.4515 2.4739 29 1 -0.3633 0.4346 0.9312 30 1 -0.3633 0.5892 -0.8420 31 1 -0.3632 -1.0238 -0.0892 32 1 1.2683 3.8845 -1.7523 33 1 1.6073 4.5849 -3.3560 34 1 -0.7241 5.0332 -2.7741 35 1 -1.0030 3.3076 -2.4366 36 1 0.8551 4.4310 -5.7304 37 1 0.3289 8.6872 -7.1348 38 1 -0.4995 1.0718 -6.6428 39 1 -1.8285 2.2495 -6.5202 40 1 -0.2023 2.7897 -7.0017 41 1 1.6549 2.7521 -5.3909 42 1 1.3437 1.0773 -4.8707 43 1 3.3634 3.9538 -1.2611 44 1 1.4307 1.8823 2.9087 45 1 2.2686 0.3639 2.5077 46 1 3.2029 1.7820 3.0408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036275624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:58 Heat of formation + Delta-G solvation = 35.153824 kcal Electronic energy + Delta-G solvation = -28937.649677 eV Core-core repulsion = 25058.665130 eV Total energy + Delta-G solvation = -3878.984547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.77954 -39.76344 -38.40369 -37.63062 -34.40328 -33.62993 -32.78325 -31.51215 -30.16120 -29.73363 -28.04324 -27.10013 -26.14308 -25.14474 -23.22145 -22.26161 -21.74017 -21.31133 -19.90237 -18.59055 -17.89848 -17.70395 -16.93148 -16.66951 -16.08726 -15.66801 -15.01324 -14.91280 -14.77395 -14.53760 -14.34310 -13.98612 -13.80268 -13.57471 -13.47727 -13.00474 -12.96630 -12.86778 -12.58833 -12.29371 -12.22118 -11.69695 -11.58436 -11.56024 -11.38445 -10.99301 -10.92642 -10.60593 -10.53288 -10.52182 -10.21125 -9.85488 -9.72405 -9.60509 -9.55337 -8.96077 -8.74161 -8.28171 -7.28672 -5.79465 -3.14667 1.12824 1.88856 2.12154 2.95598 3.20365 3.34726 3.37965 3.41108 3.44616 4.19669 4.56444 4.71106 4.76644 4.78370 4.86612 4.90851 5.03887 5.11808 5.12994 5.16011 5.22047 5.27476 5.37109 5.42595 5.54483 5.61716 5.68509 5.78349 5.84676 5.91198 5.94476 6.09879 6.18755 6.23638 6.32127 6.37631 6.50515 6.58887 6.67093 6.75176 6.92054 7.06573 7.30526 7.66360 7.97027 8.39470 8.40066 9.18103 9.90764 10.10705 11.38964 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017031 B = 0.004000 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.713732 B = 6998.436554 C = 7579.675651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.302 6.302 3 C 0.302 3.698 4 C -0.282 4.282 5 C 0.594 3.406 6 O -0.544 6.544 7 N -0.598 5.598 8 C 0.110 3.890 9 C -0.148 4.148 10 C 0.185 3.815 11 H 0.059 0.941 12 N -0.743 5.743 13 C -0.241 4.241 14 H 0.090 0.910 15 C 0.007 3.993 16 N -0.933 5.933 17 Si 0.878 3.122 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.111 4.111 22 H 0.070 0.930 23 C -0.138 4.138 24 C 0.119 3.881 25 C 0.094 3.906 26 N -0.276 5.276 27 N -0.370 5.370 28 C 0.096 3.904 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.360 0.640 37 H 0.259 0.741 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.197 0.803 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.045 -15.203 16.133 22.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.211 6.211 3 C 0.130 3.870 4 C -0.298 4.298 5 C 0.381 3.619 6 O -0.422 6.422 7 N -0.330 5.330 8 C -0.013 4.013 9 C -0.189 4.189 10 C 0.075 3.925 11 H 0.077 0.923 12 N -0.387 5.387 13 C -0.371 4.371 14 H 0.108 0.892 15 C -0.189 4.189 16 N -0.581 5.581 17 Si 0.708 3.292 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.204 1.204 21 C -0.131 4.131 22 H 0.088 0.912 23 C -0.196 4.196 24 C -0.003 4.003 25 C -0.093 4.093 26 N -0.099 5.099 27 N -0.159 5.159 28 C -0.045 4.045 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.195 0.805 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.214 0.786 44 H 0.097 0.903 45 H 0.110 0.890 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.495 -15.255 17.053 22.929 hybrid contribution 0.758 -0.351 -1.135 1.409 sum 2.253 -15.606 15.918 22.405 Atomic orbital electron populations 1.23204 0.76854 1.04516 1.01439 1.86015 1.21260 1.20807 1.93034 1.19113 0.96291 0.85239 0.86377 1.19958 1.17659 0.98574 0.93613 1.17063 0.77601 0.83411 0.83794 1.90771 1.52258 1.23820 1.75328 1.48001 1.55965 1.16003 1.13001 1.21765 0.97128 0.83155 0.99205 1.22411 0.94722 1.01934 0.99864 1.20175 0.95981 0.87396 0.88919 0.92268 1.42836 1.23213 1.12413 1.60229 1.19048 1.04771 0.87222 1.26015 0.89210 1.24628 0.98157 0.95807 1.00258 1.69693 1.39235 1.05791 1.43404 0.86670 0.85295 0.77591 0.79625 1.21068 1.21777 1.20361 1.21750 0.95276 0.98388 0.97695 0.91191 1.21675 1.02028 1.00585 0.95300 1.21639 0.95473 1.01659 0.81536 1.23943 0.96938 0.96782 0.91613 1.77237 1.20368 0.99036 1.13277 1.48835 1.46038 1.14554 1.06485 1.21953 1.04126 1.01117 0.77349 0.93100 0.92290 0.87522 0.90530 0.90156 0.90262 0.93327 0.80545 0.93083 0.93492 0.92333 0.91660 0.91470 0.89443 0.78619 0.90341 0.88995 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.13 101.05 1.12 1.42 16 2 O -0.30 -3.71 10.36 -17.76 -0.18 -3.89 16 3 C 0.30 3.99 7.02 -16.03 -0.11 3.87 16 4 C -0.28 -4.11 5.01 -104.87 -0.53 -4.64 16 5 C 0.59 9.87 7.54 -12.75 -0.10 9.77 16 6 O -0.54 -10.69 16.53 5.22 0.09 -10.60 16 7 N -0.60 -9.42 2.98 -174.48 -0.52 -9.94 16 8 C 0.11 1.67 5.71 -3.93 -0.02 1.65 16 9 C -0.15 -2.33 5.76 -26.84 -0.15 -2.48 16 10 C 0.19 3.24 2.53 -67.89 -0.17 3.07 16 11 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 12 N -0.74 -15.93 3.45 -53.39 -0.18 -16.11 16 13 C -0.24 -6.30 10.41 -15.06 -0.16 -6.46 16 14 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 15 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 16 N -0.93 -28.35 13.97 55.49 0.78 -27.58 16 17 Si 0.88 21.39 27.74 -169.99 -4.71 16.68 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.28 -6.35 6.52 56.52 0.37 -5.99 16 21 C -0.11 -1.68 2.67 -90.50 -0.24 -1.92 16 22 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 23 C -0.14 -2.02 9.06 37.16 0.34 -1.68 16 24 C 0.12 1.90 5.41 -3.71 -0.02 1.88 16 25 C 0.09 1.21 9.74 -16.96 -0.17 1.05 16 26 N -0.28 -3.57 12.48 30.88 0.39 -3.18 16 27 N -0.37 -4.24 3.99 -67.67 -0.27 -4.51 16 28 C 0.10 0.64 11.42 59.85 0.68 1.32 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.04 4.80 -51.93 -0.25 0.79 16 33 H 0.08 1.38 7.74 -51.93 -0.40 0.97 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.36 7.80 3.78 -40.82 -0.15 7.64 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.08 7.53 -51.93 -0.39 0.69 16 41 H 0.07 1.15 6.64 -51.93 -0.34 0.81 16 42 H 0.09 1.40 7.02 -51.93 -0.36 1.04 16 43 H 0.20 2.15 7.88 -52.49 -0.41 1.73 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 0.49 8.01 -51.93 -0.42 0.08 16 46 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -33.93 370.40 -5.64 -39.57 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.97 Total: 7.03 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 0.38 Total: 6.96 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: 0.19 Total: -61.33 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.10 Total: -14.49 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.93 -5.64 -39.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036275624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.723 kcal (2) G-P(sol) polarization free energy of solvation -33.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds