Wall clock time and date at job start Tue Mar 31 2020 14:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35357 * 116.99711 * 2 1 4 4 C 1.38996 * 126.40267 * 273.25173 * 3 2 1 5 5 C 1.46918 * 126.50147 * 0.02562 * 4 3 2 6 6 O 1.21667 * 120.00371 * 307.18798 * 5 4 3 7 7 N 1.34777 * 119.99716 * 127.17969 * 5 4 3 8 8 C 1.46931 * 120.63190 * 3.30845 * 7 5 4 9 9 C 1.52758 * 109.00625 * 233.57941 * 8 7 5 10 10 C 1.53037 * 109.38426 * 305.58713 * 9 8 7 11 11 H 1.09004 * 109.45820 * 181.26612 * 10 9 8 12 12 N 1.46501 * 109.46358 * 301.21784 * 10 9 8 13 13 C 1.36936 * 120.00152 * 275.07100 * 12 10 9 14 14 H 1.07993 * 119.99906 * 359.97438 * 13 12 10 15 15 C 1.38817 * 119.99536 * 179.97438 * 13 12 10 16 16 N 1.31618 * 119.99449 * 179.97438 * 15 13 12 17 17 Si 1.86792 * 120.00275 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47715 * 89.99467 * 17 15 13 19 19 H 1.48504 * 109.47041 * 209.99351 * 17 15 13 20 20 H 1.48505 * 109.47171 * 329.99040 * 17 15 13 21 21 C 1.53031 * 109.53745 * 61.24518 * 10 9 8 22 22 H 1.08995 * 109.50350 * 58.58334 * 21 10 9 23 23 C 1.53000 * 109.49827 * 178.68153 * 21 10 9 24 24 C 1.46925 * 120.62969 * 183.58471 * 7 5 4 25 25 C 1.41470 * 107.00223 * 180.02562 * 4 3 2 26 26 N 1.30319 * 108.13590 * 359.97438 * 25 4 3 27 27 N 1.34656 * 126.40353 * 93.25604 * 3 2 1 28 28 C 1.46500 * 125.73881 * 0.26102 * 27 3 2 29 29 H 1.08998 * 109.46832 * 295.01746 * 1 2 3 30 30 H 1.08999 * 109.47034 * 55.01729 * 1 2 3 31 31 H 1.09000 * 109.46574 * 175.01882 * 1 2 3 32 32 H 1.08999 * 109.58440 * 353.41949 * 8 7 5 33 33 H 1.09004 * 109.58342 * 113.83860 * 8 7 5 34 34 H 1.09003 * 109.55863 * 185.55015 * 9 8 7 35 35 H 1.09002 * 109.38555 * 65.51874 * 9 8 7 36 36 H 0.96997 * 119.99397 * 95.06642 * 12 10 9 37 37 H 0.97005 * 119.99555 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.47160 * 179.83294 * 23 21 10 39 39 H 1.08997 * 109.47500 * 299.83638 * 23 21 10 40 40 H 1.09004 * 109.47145 * 59.83423 * 23 21 10 41 41 H 1.08998 * 109.58787 * 246.16141 * 24 7 5 42 42 H 1.09000 * 109.58551 * 6.44115 * 24 7 5 43 43 H 1.07995 * 125.92951 * 180.02562 * 25 4 3 44 44 H 1.09000 * 109.46734 * 264.74277 * 28 27 3 45 45 H 1.09000 * 109.47614 * 24.75040 * 28 27 3 46 46 H 1.09000 * 109.46943 * 144.74914 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0435 1.2061 0.0000 4 6 2.3614 1.9699 -1.1169 5 6 2.0939 1.6214 -2.5189 6 8 2.4627 0.5493 -2.9604 7 7 1.4398 2.4894 -3.3159 8 6 1.0518 3.8164 -2.8184 9 6 -0.4450 4.0160 -3.0490 10 6 -0.7675 3.7792 -4.5261 11 1 -1.8316 3.9433 -4.6963 12 7 0.0075 4.7101 -5.3502 13 6 -0.4648 5.9740 -5.5838 14 1 -1.4087 6.2845 -5.1607 15 6 0.2698 6.8562 -6.3642 16 7 -0.1843 8.0709 -6.5891 17 14 1.9021 6.3188 -7.0965 18 1 1.6706 5.7174 -8.4343 19 1 2.7959 7.4971 -7.2315 20 1 2.5377 5.3149 -6.2057 21 6 -0.4064 2.3410 -4.9046 22 1 -0.9643 1.6480 -4.2749 23 6 -0.7596 2.0953 -6.3728 24 6 1.0959 2.1244 -4.6969 25 6 2.9914 3.1465 -0.6478 26 7 3.0440 3.0874 0.6530 27 7 2.4611 1.8902 1.0820 28 6 2.3326 1.4515 2.4739 29 1 -0.3633 0.4346 0.9312 30 1 -0.3633 0.5892 -0.8420 31 1 -0.3632 -1.0238 -0.0892 32 1 1.2683 3.8845 -1.7523 33 1 1.6073 4.5849 -3.3560 34 1 -0.7241 5.0332 -2.7741 35 1 -1.0030 3.3076 -2.4366 36 1 0.8551 4.4310 -5.7304 37 1 0.3289 8.6872 -7.1348 38 1 -0.4995 1.0718 -6.6428 39 1 -1.8285 2.2495 -6.5202 40 1 -0.2023 2.7897 -7.0017 41 1 1.6549 2.7521 -5.3909 42 1 1.3437 1.0773 -4.8707 43 1 3.3634 3.9538 -1.2611 44 1 1.4307 1.8823 2.9087 45 1 2.2686 0.3639 2.5077 46 1 3.2029 1.7820 3.0408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036275624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:57 Heat of formation + Delta-G solvation = 11.161177 kcal Electronic energy + Delta-G solvation = -28938.690076 eV Core-core repulsion = 25058.665130 eV Total energy + Delta-G solvation = -3880.024947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.73777 -41.04090 -39.27153 -39.01471 -35.92949 -34.76663 -34.10606 -33.13510 -31.47255 -31.08700 -28.88288 -27.83713 -27.32069 -26.50580 -25.01909 -23.35793 -23.03671 -22.23758 -21.04119 -19.95758 -19.72681 -18.79028 -18.08890 -17.54832 -17.15050 -16.75444 -16.58448 -16.19553 -15.82053 -15.63147 -15.55088 -15.33553 -15.07023 -14.90322 -14.60306 -14.45344 -14.17834 -13.71592 -13.62139 -13.54853 -13.28944 -13.01132 -12.92691 -12.87333 -12.67192 -12.48403 -12.42512 -12.04273 -11.94361 -11.90353 -11.64987 -11.38486 -11.19525 -11.02092 -10.87371 -10.48114 -9.79673 -9.57709 -9.20449 -7.95690 -5.26303 0.20713 1.05300 1.09057 1.40052 1.41077 1.48019 1.77991 2.08627 2.49888 2.52073 3.31960 3.37063 3.63732 3.70269 3.91097 3.97515 4.02166 4.05308 4.19029 4.24602 4.28448 4.33004 4.35127 4.37875 4.46465 4.55309 4.60043 4.61602 4.64129 4.72753 4.83186 4.97098 5.02628 5.04655 5.14200 5.18782 5.25460 5.27585 5.33951 5.46098 5.64169 5.87045 6.20458 6.28374 6.38020 6.41176 7.13749 7.15449 7.92332 8.10569 9.26244 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017031 B = 0.004000 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.713732 B = 6998.436554 C = 7579.675651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.307 3.693 4 C -0.313 4.313 5 C 0.599 3.401 6 O -0.580 6.580 7 N -0.595 5.595 8 C 0.118 3.882 9 C -0.141 4.141 10 C 0.178 3.822 11 H 0.052 0.948 12 N -0.742 5.742 13 C -0.211 4.211 14 H 0.062 0.938 15 C -0.058 4.058 16 N -0.985 5.985 17 Si 0.938 3.062 18 H -0.283 1.283 19 H -0.301 1.301 20 H -0.256 1.256 21 C -0.099 4.099 22 H 0.091 0.909 23 C -0.136 4.136 24 C 0.119 3.881 25 C 0.093 3.907 26 N -0.288 5.288 27 N -0.362 5.362 28 C 0.084 3.916 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.362 0.638 37 H 0.254 0.746 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.042 0.958 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.209 0.791 44 H 0.099 0.901 45 H 0.107 0.893 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.187 -17.396 18.032 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.226 6.226 3 C 0.133 3.867 4 C -0.329 4.329 5 C 0.388 3.612 6 O -0.460 6.460 7 N -0.326 5.326 8 C -0.005 4.005 9 C -0.181 4.181 10 C 0.070 3.930 11 H 0.070 0.930 12 N -0.386 5.386 13 C -0.343 4.343 14 H 0.080 0.920 15 C -0.249 4.249 16 N -0.636 5.636 17 Si 0.767 3.233 18 H -0.209 1.209 19 H -0.228 1.228 20 H -0.180 1.180 21 C -0.119 4.119 22 H 0.109 0.891 23 C -0.194 4.194 24 C -0.003 4.003 25 C -0.093 4.093 26 N -0.111 5.111 27 N -0.151 5.151 28 C -0.055 4.055 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.146 0.854 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.196 0.804 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.225 0.775 44 H 0.118 0.882 45 H 0.125 0.875 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.624 -17.495 19.007 25.884 hybrid contribution 0.595 0.223 -1.582 1.705 sum 2.218 -17.272 17.425 24.635 Atomic orbital electron populations 1.23453 0.74835 1.05999 1.02152 1.85989 1.23152 1.20345 1.93122 1.19182 0.95809 0.85145 0.86612 1.19886 1.20065 1.00073 0.92907 1.17301 0.76693 0.82735 0.84494 1.90744 1.53755 1.25337 1.76179 1.48003 1.55686 1.16007 1.12860 1.21680 0.96293 0.82349 1.00145 1.22281 0.95457 1.01828 0.98567 1.20405 0.95018 0.88100 0.89463 0.93031 1.42800 1.23547 1.11364 1.60841 1.19000 1.03071 0.88651 1.23536 0.91989 1.25272 1.01782 0.95959 1.01907 1.69857 1.40989 1.07339 1.45428 0.85671 0.81350 0.77168 0.79116 1.20944 1.22840 1.18043 1.21661 0.94972 0.96776 0.98482 0.89072 1.21656 1.01892 1.01411 0.94412 1.21613 0.95704 1.01457 0.81531 1.24120 0.96709 0.96699 0.91802 1.77205 1.20797 0.99986 1.13160 1.49170 1.44591 1.13685 1.07695 1.22379 1.05738 1.02322 0.75075 0.90757 0.93538 0.85371 0.88561 0.92092 0.91691 0.90750 0.80357 0.93668 0.91215 0.91993 0.93852 0.92753 0.89273 0.77455 0.88237 0.87474 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.13 113.37 1.26 1.68 16 2 O -0.32 -7.05 10.36 -86.48 -0.90 -7.94 16 3 C 0.31 7.46 7.02 84.44 0.59 8.05 16 4 C -0.31 -8.65 5.01 -20.03 -0.10 -8.75 16 5 C 0.60 19.14 7.54 86.52 0.65 19.79 16 6 O -0.58 -22.30 16.53 -4.24 -0.07 -22.37 16 7 N -0.59 -17.84 2.98 -824.16 -2.45 -20.30 16 8 C 0.12 3.40 5.71 86.22 0.49 3.90 16 9 C -0.14 -4.19 5.76 30.53 0.18 -4.01 16 10 C 0.18 6.02 2.53 45.01 0.11 6.13 16 11 H 0.05 1.84 8.08 -2.38 -0.02 1.82 16 12 N -0.74 -31.38 3.45 -322.83 -1.11 -32.49 16 13 C -0.21 -11.19 10.41 84.03 0.87 -10.32 16 14 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 15 C -0.06 -3.28 5.50 84.86 0.47 -2.82 16 16 N -0.98 -61.52 13.97 21.65 0.30 -61.21 16 17 Si 0.94 44.64 27.74 68.60 1.90 46.55 16 18 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 19 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 20 H -0.26 -11.06 6.52 99.48 0.65 -10.41 16 21 C -0.10 -2.79 2.67 -10.72 -0.03 -2.82 16 22 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 23 C -0.14 -3.72 9.06 71.98 0.65 -3.07 16 24 C 0.12 3.62 5.41 86.36 0.47 4.09 16 25 C 0.09 2.26 9.74 85.71 0.83 3.10 16 26 N -0.29 -6.87 12.48 -56.22 -0.70 -7.58 16 27 N -0.36 -7.42 3.99 -479.80 -1.91 -9.33 16 28 C 0.08 0.86 11.42 127.77 1.46 2.31 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 2.44 4.80 -2.39 -0.01 2.43 16 33 H 0.06 2.02 7.74 -2.39 -0.02 2.01 16 34 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.36 15.28 3.78 -92.71 -0.35 14.93 16 37 H 0.25 15.34 8.31 -92.70 -0.77 14.57 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.04 1.38 7.53 -2.38 -0.02 1.36 16 41 H 0.05 1.79 6.64 -2.39 -0.02 1.78 16 42 H 0.09 2.71 7.02 -2.39 -0.02 2.70 16 43 H 0.21 4.28 7.88 -2.91 -0.02 4.26 16 44 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.11 0.79 8.01 -2.39 -0.02 0.77 16 46 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -74.33 370.40 3.55 -70.78 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.58 Total: 26.63 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 7.91 Total: 17.27 kcal Atomic # 7 Polarization: -125.03 SS G_CDS: -5.88 Total: -130.91 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.97 Total: -30.31 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.55 kcal Total: -74.33 3.55 -70.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036275624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.937 kcal (2) G-P(sol) polarization free energy of solvation -74.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds