Wall clock time and date at job start Tue Mar 31 2020 14:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35354 * 116.99838 * 2 1 4 4 C 1.38993 * 126.41072 * 92.01513 * 3 2 1 5 5 C 1.46921 * 126.49368 * 359.94573 * 4 3 2 6 6 O 1.21662 * 120.00547 * 29.37401 * 5 4 3 7 7 N 1.34783 * 119.99726 * 209.37928 * 5 4 3 8 8 C 1.46930 * 120.62846 * 357.03155 * 7 5 4 9 9 C 1.53195 * 108.77152 * 126.37403 * 8 7 5 10 10 C 1.53034 * 109.31245 * 54.63331 * 9 8 7 11 11 H 1.09004 * 109.45674 * 178.62872 * 10 9 8 12 12 N 1.46502 * 109.46448 * 58.65501 * 10 9 8 13 13 C 1.36935 * 119.99907 * 84.99363 * 12 10 9 14 14 H 1.08005 * 120.00035 * 0.02562 * 13 12 10 15 15 C 1.38813 * 120.00279 * 180.02562 * 13 12 10 16 16 N 1.31619 * 119.99384 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00201 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46985 * 180.02562 * 17 15 13 19 19 H 1.48506 * 109.47344 * 299.99642 * 17 15 13 20 20 H 1.48492 * 109.47474 * 60.00281 * 17 15 13 21 21 C 1.53039 * 109.54034 * 298.63116 * 10 9 8 22 22 H 1.08998 * 109.50234 * 301.41591 * 21 10 9 23 23 C 1.53003 * 109.49794 * 181.32055 * 21 10 9 24 24 C 1.46924 * 120.62969 * 177.01330 * 7 5 4 25 25 C 1.41457 * 107.00708 * 180.20080 * 4 3 2 26 26 N 1.30318 * 108.13865 * 359.62017 * 25 4 3 27 27 N 1.34662 * 126.40077 * 271.98619 * 3 2 1 28 28 C 1.46498 * 125.74275 * 0.06149 * 27 3 2 29 29 H 1.09002 * 109.47163 * 304.98784 * 1 2 3 30 30 H 1.08998 * 109.46603 * 64.98681 * 1 2 3 31 31 H 1.09003 * 109.46844 * 184.98657 * 1 2 3 32 32 H 1.08998 * 109.58825 * 6.58370 * 8 7 5 33 33 H 1.09005 * 109.69999 * 246.22566 * 8 7 5 34 34 H 1.09001 * 109.49288 * 294.68071 * 9 8 7 35 35 H 1.08998 * 109.49388 * 174.58413 * 9 8 7 36 36 H 0.96998 * 120.00092 * 265.00185 * 12 10 9 37 37 H 0.97005 * 119.99936 * 180.02562 * 16 15 13 38 38 H 1.08991 * 109.47036 * 60.00205 * 23 21 10 39 39 H 1.09000 * 109.46875 * 180.02562 * 23 21 10 40 40 H 1.09006 * 109.46846 * 300.00071 * 23 21 10 41 41 H 1.08997 * 109.58619 * 353.41178 * 24 7 5 42 42 H 1.09001 * 109.58986 * 113.84169 * 24 7 5 43 43 H 1.08005 * 125.92952 * 179.73781 * 25 4 3 44 44 H 1.09004 * 109.47264 * 84.93070 * 28 27 3 45 45 H 1.08996 * 109.47048 * 204.92815 * 28 27 3 46 46 H 1.08998 * 109.47550 * 324.93131 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.4531 1.9233 1.1179 5 6 2.3000 1.5165 2.5214 6 8 2.2893 0.3359 2.8150 7 7 2.1713 2.4514 3.4837 8 6 2.2471 3.8811 3.1534 9 6 0.9963 4.5795 3.6961 10 6 0.8618 4.2862 5.1920 11 1 -0.0141 4.8020 5.5858 12 7 2.0603 4.7561 5.8913 13 6 2.1525 6.0631 6.2894 14 1 1.3415 6.7474 6.0882 15 6 3.2883 6.5085 6.9515 16 7 4.2768 5.6747 7.1962 17 14 3.4138 8.2912 7.4951 18 1 4.7159 8.5110 8.1745 19 1 3.3194 9.1786 6.3081 20 1 2.3063 8.6015 8.4344 21 6 0.7046 2.7790 5.4061 22 1 -0.1731 2.4244 4.8658 23 6 0.5372 2.4900 6.8992 24 6 1.9521 2.0602 4.8828 25 6 3.0398 3.1217 0.6484 26 7 2.9909 3.1144 -0.6538 27 7 2.3728 1.9351 -1.0832 28 6 2.1247 1.5574 -2.4768 29 1 -0.3633 0.5893 0.8419 30 1 -0.3632 0.4345 -0.9313 31 1 -0.3633 -1.0238 0.0893 32 1 2.2940 4.0042 2.0714 33 1 3.1360 4.3170 3.6096 34 1 0.1158 4.2078 3.1718 35 1 1.0847 5.6550 3.5427 36 1 2.7885 4.1415 6.0722 37 1 5.0704 5.9858 7.6592 38 1 -0.3489 3.0039 7.2716 39 1 0.4257 1.4164 7.0512 40 1 1.4160 2.8437 7.4385 41 1 1.8042 0.9820 4.9419 42 1 2.8167 2.3460 5.4819 43 1 3.4577 3.9058 1.2626 44 1 1.1136 1.8515 -2.7584 45 1 2.8430 2.0614 -3.1232 46 1 2.2327 0.4782 -2.5855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036275626.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:04 Heat of formation + Delta-G solvation = 45.090236 kcal Electronic energy + Delta-G solvation = -28719.420929 eV Core-core repulsion = 24840.867257 eV Total energy + Delta-G solvation = -3878.553672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.75346 -39.59300 -38.33562 -37.41415 -34.35875 -33.56922 -32.65019 -31.34459 -30.08182 -29.12360 -28.03624 -27.08055 -25.87904 -25.04036 -23.53971 -22.12969 -21.78330 -21.19757 -19.83605 -18.51294 -17.58200 -17.30295 -16.83194 -16.64465 -15.99709 -15.38813 -14.96768 -14.82375 -14.66901 -14.47793 -14.19059 -14.04861 -13.66631 -13.45844 -13.23133 -13.00565 -12.91716 -12.71571 -12.48572 -12.18639 -11.98201 -11.51895 -11.43151 -11.26575 -11.10842 -10.86995 -10.74827 -10.47976 -10.44519 -10.30301 -10.19543 -9.79551 -9.58643 -9.52371 -9.43135 -8.88823 -8.72449 -8.07389 -6.94626 -5.76367 -3.04685 1.14657 1.94606 2.10360 3.22621 3.34178 3.43634 3.48929 3.49691 3.59630 4.25423 4.59656 4.74864 4.77806 4.82848 4.94312 4.97186 5.05958 5.16291 5.22908 5.27607 5.39355 5.41478 5.47298 5.63012 5.63702 5.78913 5.87843 5.90227 5.99323 6.12026 6.14845 6.23792 6.30932 6.37192 6.47562 6.54710 6.71596 6.73500 6.82311 6.98429 7.08126 7.14985 7.34796 7.70385 7.85198 8.42206 8.57636 9.53739 10.10980 10.46262 11.45901 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.003621 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.572663 B = 7731.262618 C = 8639.208863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.296 6.296 3 C 0.309 3.691 4 C -0.282 4.282 5 C 0.591 3.409 6 O -0.549 6.549 7 N -0.595 5.595 8 C 0.091 3.909 9 C -0.148 4.148 10 C 0.179 3.821 11 H 0.049 0.951 12 N -0.718 5.718 13 C -0.238 4.238 14 H 0.068 0.932 15 C -0.011 4.011 16 N -0.932 5.932 17 Si 0.904 3.096 18 H -0.292 1.292 19 H -0.287 1.287 20 H -0.288 1.288 21 C -0.108 4.108 22 H 0.064 0.936 23 C -0.137 4.137 24 C 0.122 3.878 25 C 0.084 3.916 26 N -0.279 5.279 27 N -0.373 5.373 28 C 0.095 3.905 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.052 0.948 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.211 0.789 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.406 -9.038 -16.996 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.205 6.205 3 C 0.137 3.863 4 C -0.298 4.298 5 C 0.379 3.621 6 O -0.428 6.428 7 N -0.326 5.326 8 C -0.031 4.031 9 C -0.190 4.190 10 C 0.068 3.932 11 H 0.067 0.933 12 N -0.361 5.361 13 C -0.369 4.369 14 H 0.086 0.914 15 C -0.207 4.207 16 N -0.580 5.580 17 Si 0.735 3.265 18 H -0.218 1.218 19 H -0.214 1.214 20 H -0.214 1.214 21 C -0.128 4.128 22 H 0.082 0.918 23 C -0.195 4.195 24 C 0.000 4.000 25 C -0.102 4.102 26 N -0.102 5.102 27 N -0.162 5.162 28 C -0.046 4.046 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.227 0.773 44 H 0.094 0.906 45 H 0.116 0.884 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.112 -9.150 -17.952 21.721 hybrid contribution -0.017 0.684 0.954 1.174 sum -8.129 -8.466 -16.998 20.656 Atomic orbital electron populations 1.23152 0.77087 1.04506 1.01057 1.86045 1.21043 1.20500 1.92947 1.19212 0.95998 0.84786 0.86325 1.20050 1.17944 0.98293 0.93521 1.16991 0.76574 0.85136 0.83408 1.90766 1.52143 1.17072 1.82814 1.47861 1.70574 1.06639 1.07526 1.22388 1.00711 0.79355 1.00692 1.22507 0.96079 1.00601 0.99766 1.20208 0.91706 0.91045 0.90200 0.93292 1.42467 1.16782 1.09414 1.67408 1.19170 1.00912 0.86810 1.30019 0.91360 1.24690 0.96829 0.97595 1.01574 1.69640 1.07531 1.33919 1.46913 0.86326 0.76703 0.85117 0.78345 1.21838 1.21379 1.21438 1.21702 0.97145 0.97222 0.96725 0.91801 1.21665 1.02957 0.99727 0.95137 1.21626 0.98255 0.99886 0.80266 1.24427 0.97516 0.96700 0.91572 1.77268 1.19032 1.00434 1.13451 1.48916 1.46082 1.14749 1.06480 1.21952 1.03015 1.02068 0.77563 0.92395 0.93420 0.87551 0.89444 0.89544 0.93539 0.90821 0.78044 0.93490 0.92896 0.93799 0.91015 0.89828 0.90637 0.77325 0.90562 0.88442 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 11.13 101.05 1.12 1.46 16 2 O -0.30 -3.87 10.20 -17.75 -0.18 -4.05 16 3 C 0.31 4.29 6.98 -16.03 -0.11 4.18 16 4 C -0.28 -4.34 5.74 -104.88 -0.60 -4.95 16 5 C 0.59 10.40 7.63 -12.74 -0.10 10.31 16 6 O -0.55 -11.20 16.21 5.22 0.08 -11.11 16 7 N -0.59 -10.02 2.97 -174.21 -0.52 -10.53 16 8 C 0.09 1.45 5.28 -3.71 -0.02 1.43 16 9 C -0.15 -2.44 5.78 -26.61 -0.15 -2.60 16 10 C 0.18 3.31 2.53 -67.89 -0.17 3.14 16 11 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 12 N -0.72 -16.37 3.64 -53.38 -0.19 -16.56 16 13 C -0.24 -6.15 9.93 -15.06 -0.15 -6.30 16 14 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 15 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 16 N -0.93 -26.91 13.06 55.49 0.72 -26.19 16 17 Si 0.90 21.68 29.55 -169.99 -5.02 16.65 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 C -0.11 -1.78 2.67 -90.50 -0.24 -2.02 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 23 C -0.14 -2.21 9.05 37.16 0.34 -1.87 16 24 C 0.12 2.11 5.41 -3.71 -0.02 2.09 16 25 C 0.08 1.14 9.71 -16.97 -0.16 0.98 16 26 N -0.28 -3.74 12.48 30.88 0.39 -3.35 16 27 N -0.37 -4.44 3.99 -67.67 -0.27 -4.71 16 28 C 0.10 0.66 11.38 59.85 0.68 1.34 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.21 3.21 -51.93 -0.17 1.04 16 33 H 0.09 1.58 7.74 -51.93 -0.40 1.18 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.38 9.42 5.93 -40.82 -0.24 9.18 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 1.34 7.54 -51.93 -0.39 0.95 16 41 H 0.08 1.46 7.02 -51.93 -0.36 1.09 16 42 H 0.08 1.44 6.64 -51.93 -0.34 1.09 16 43 H 0.21 2.52 5.91 -52.48 -0.31 2.21 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -32.81 369.90 -5.94 -38.75 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -6.84 Total: 8.74 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 0.31 Total: 6.80 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.13 Total: -61.35 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.10 Total: -15.16 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.81 -5.94 -38.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036275626.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.840 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds