Wall clock time and date at job start Tue Mar 31 2020 14:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35357 * 116.99898 * 2 1 4 4 C 1.38988 * 126.40518 * 263.26026 * 3 2 1 5 5 C 1.46919 * 126.49992 * 0.02562 * 4 3 2 6 6 O 1.21662 * 120.00019 * 29.06777 * 5 4 3 7 7 N 1.34782 * 120.00435 * 209.07429 * 5 4 3 8 8 C 1.46927 * 120.62641 * 356.84706 * 7 5 4 9 9 C 1.53196 * 108.77496 * 126.41726 * 8 7 5 10 10 C 1.53043 * 109.31170 * 54.63481 * 9 8 7 11 11 H 1.08999 * 109.45962 * 58.64014 * 10 9 8 12 12 N 1.46495 * 109.46163 * 178.61516 * 10 9 8 13 13 C 1.36933 * 120.00011 * 275.00416 * 12 10 9 14 14 H 1.07997 * 119.99741 * 359.97438 * 13 12 10 15 15 C 1.38813 * 119.99731 * 179.97438 * 13 12 10 16 16 N 1.31615 * 120.00449 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99736 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46942 * 60.00037 * 17 15 13 19 19 H 1.48497 * 109.47028 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47074 * 300.00176 * 17 15 13 21 21 C 1.53075 * 109.65514 * 298.70250 * 10 9 8 22 22 H 1.09004 * 109.39221 * 301.27049 * 21 10 9 23 23 C 1.53008 * 109.61842 * 181.17166 * 21 10 9 24 24 C 1.46920 * 120.63357 * 176.87731 * 7 5 4 25 25 C 1.41464 * 107.00745 * 179.75864 * 4 3 2 26 26 N 1.30321 * 108.13567 * 0.24044 * 25 4 3 27 27 N 1.34658 * 126.40224 * 83.44008 * 3 2 1 28 28 C 1.46493 * 125.74621 * 359.97438 * 27 3 2 29 29 H 1.08992 * 109.47397 * 304.66787 * 1 2 3 30 30 H 1.08997 * 109.46911 * 64.67081 * 1 2 3 31 31 H 1.09006 * 109.46576 * 184.66652 * 1 2 3 32 32 H 1.09004 * 109.58672 * 246.20349 * 8 7 5 33 33 H 1.09003 * 109.58621 * 6.48730 * 8 7 5 34 34 H 1.08993 * 109.49816 * 174.58696 * 9 8 7 35 35 H 1.08998 * 109.49668 * 294.65378 * 9 8 7 36 36 H 0.97006 * 120.00111 * 94.99492 * 12 10 9 37 37 H 0.97000 * 120.00216 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.46679 * 300.09974 * 23 21 10 39 39 H 1.08996 * 109.47513 * 60.10494 * 23 21 10 40 40 H 1.09001 * 109.46706 * 180.10838 * 23 21 10 41 41 H 1.09000 * 109.58514 * 353.36791 * 24 7 5 42 42 H 1.09001 * 109.59214 * 113.65065 * 24 7 5 43 43 H 1.07998 * 125.93187 * 180.22407 * 25 4 3 44 44 H 1.09003 * 109.47813 * 275.63996 * 28 27 3 45 45 H 1.09006 * 109.46992 * 35.63691 * 28 27 3 46 46 H 1.08995 * 109.47402 * 155.63547 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2061 0.0000 4 6 2.5349 1.8814 -1.1109 5 6 2.4852 1.4220 -2.5055 6 8 1.5836 0.6930 -2.8741 7 7 3.4385 1.8081 -3.3767 8 6 4.4947 2.7427 -2.9648 9 6 5.8570 2.1196 -3.2853 10 6 5.9014 1.7336 -4.7656 11 1 5.7302 2.6195 -5.3771 12 7 7.2147 1.1676 -5.0832 13 6 8.2578 1.9951 -5.4027 14 1 8.1122 3.0651 -5.4209 15 6 9.5024 1.4588 -5.7032 16 7 9.6800 0.1548 -5.6805 17 14 10.9252 2.5877 -6.1398 18 1 11.1949 3.5060 -5.0043 19 1 12.1362 1.7738 -6.4159 20 1 10.5758 3.3809 -7.3455 21 6 4.8145 0.6967 -5.0601 22 1 4.9719 -0.1808 -4.4328 23 6 4.8785 0.2898 -6.5337 24 6 3.4408 1.3028 -4.7563 25 6 3.0865 3.0979 -0.6450 26 7 2.9390 3.1409 0.6491 27 7 2.2959 1.9743 1.0767 28 6 1.9496 1.6467 2.4619 29 1 -0.3634 0.5845 0.8451 30 1 -0.3633 0.4396 -0.9289 31 1 -0.3633 -1.0243 0.0836 32 1 4.3849 3.6809 -3.5089 33 1 4.4192 2.9305 -1.8937 34 1 6.6459 2.8412 -3.0737 35 1 6.0034 1.2302 -2.6724 36 1 7.3454 0.2065 -5.0671 37 1 10.5497 -0.2199 -5.8901 38 1 4.7224 1.1680 -7.1602 39 1 5.8560 -0.1414 -6.7495 40 1 4.1025 -0.4470 -6.7411 41 1 2.6716 0.5385 -4.8668 42 1 3.2426 2.1231 -5.4462 43 1 3.5496 3.8588 -1.2557 44 1 0.9182 1.9397 2.6578 45 1 2.0586 0.5737 2.6197 46 1 2.6144 2.1828 3.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036275627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:07 Heat of formation + Delta-G solvation = 41.503353 kcal Electronic energy + Delta-G solvation = -28219.532736 eV Core-core repulsion = 24340.823525 eV Total energy + Delta-G solvation = -3878.709211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.84925 -39.64841 -38.38669 -37.39386 -34.62697 -33.73814 -32.65275 -31.40395 -30.20286 -29.23316 -28.10050 -27.10646 -25.96479 -25.05695 -23.26280 -21.89846 -21.74464 -21.31209 -19.97989 -19.23841 -17.78040 -17.12795 -16.99499 -16.60629 -16.06986 -15.58173 -15.01117 -14.90178 -14.79713 -14.67444 -14.11333 -13.98439 -13.65123 -13.57616 -13.23343 -13.09882 -13.01717 -12.73819 -12.35621 -12.24109 -12.07409 -11.57261 -11.52882 -11.37210 -11.11523 -10.88942 -10.75419 -10.57660 -10.49506 -10.32699 -10.19870 -9.72763 -9.71253 -9.58334 -9.53299 -8.87210 -8.81623 -8.31038 -6.92273 -5.74173 -3.02515 1.06642 1.86759 1.98770 3.05533 3.25379 3.44883 3.49245 3.50427 3.51023 4.15722 4.60511 4.67289 4.71801 4.74318 4.82587 4.99953 5.01359 5.05937 5.12473 5.30295 5.33545 5.36119 5.41768 5.46938 5.58561 5.70601 5.75150 5.81395 5.86961 6.04666 6.11315 6.16067 6.22644 6.38493 6.47023 6.50428 6.62428 6.73765 6.87963 6.99222 7.08826 7.13072 7.24414 7.65143 7.71200 8.40598 8.44217 9.55413 10.13863 10.48667 11.48371 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.003155 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.350430 B = 8872.816938 C = 9706.600732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.300 6.300 3 C 0.314 3.686 4 C -0.286 4.286 5 C 0.598 3.402 6 O -0.551 6.551 7 N -0.599 5.599 8 C 0.084 3.916 9 C -0.150 4.150 10 C 0.184 3.816 11 H 0.048 0.952 12 N -0.721 5.721 13 C -0.237 4.237 14 H 0.069 0.931 15 C -0.013 4.013 16 N -0.933 5.933 17 Si 0.905 3.095 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.286 1.286 21 C -0.110 4.110 22 H 0.069 0.931 23 C -0.135 4.135 24 C 0.124 3.876 25 C 0.081 3.919 26 N -0.278 5.278 27 N -0.372 5.372 28 C 0.094 3.906 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.209 0.791 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.593 3.627 13.520 24.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.208 6.208 3 C 0.142 3.858 4 C -0.301 4.301 5 C 0.387 3.613 6 O -0.430 6.430 7 N -0.330 5.330 8 C -0.040 4.040 9 C -0.192 4.192 10 C 0.074 3.926 11 H 0.066 0.934 12 N -0.361 5.361 13 C -0.368 4.368 14 H 0.087 0.913 15 C -0.209 4.209 16 N -0.581 5.581 17 Si 0.736 3.264 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.213 1.213 21 C -0.130 4.130 22 H 0.087 0.913 23 C -0.193 4.193 24 C 0.001 3.999 25 C -0.105 4.105 26 N -0.101 5.101 27 N -0.162 5.162 28 C -0.047 4.047 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.225 0.775 44 H 0.095 0.905 45 H 0.109 0.891 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.718 3.742 14.429 24.718 hybrid contribution 0.822 -0.073 -0.707 1.087 sum -18.895 3.669 13.722 23.639 Atomic orbital electron populations 1.23153 0.76699 1.04083 1.01709 1.86011 1.21490 1.20426 1.92923 1.19224 0.95431 0.84728 0.86449 1.19995 1.17526 0.98935 0.93652 1.16949 0.81451 0.79588 0.83361 1.90735 1.35287 1.38219 1.78741 1.47876 1.27070 1.46255 1.11839 1.22531 0.87986 0.92145 1.01298 1.22660 0.94351 1.01184 1.00970 1.20203 0.85954 0.94385 0.92086 0.93444 1.42407 1.05014 1.06473 1.82198 1.19177 0.89025 0.90035 1.38581 0.91280 1.24720 0.97731 0.95687 1.02764 1.69647 1.23320 1.09495 1.55667 0.86307 0.82273 0.79594 0.78234 1.21345 1.21810 1.21329 1.21751 0.94164 0.99440 0.97683 0.91295 1.21650 1.02433 1.00603 0.94616 1.21676 0.98295 0.99073 0.80851 1.24346 0.97034 0.97195 0.91882 1.77256 1.18052 1.01222 1.13566 1.48929 1.45633 1.14449 1.07192 1.21982 1.02078 1.02791 0.77866 0.93712 0.91495 0.87736 0.91309 0.88749 0.90636 0.92241 0.78245 0.93513 0.93075 0.90817 0.93848 0.89407 0.91638 0.77516 0.90511 0.89129 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 11.13 101.05 1.12 1.46 16 2 O -0.30 -3.78 10.20 -17.76 -0.18 -3.96 16 3 C 0.31 4.12 6.98 -16.03 -0.11 4.01 16 4 C -0.29 -4.02 5.73 -104.88 -0.60 -4.62 16 5 C 0.60 9.57 7.63 -12.74 -0.10 9.47 16 6 O -0.55 -10.11 16.20 5.22 0.08 -10.03 16 7 N -0.60 -8.95 2.97 -174.22 -0.52 -9.46 16 8 C 0.08 1.12 5.56 -3.71 -0.02 1.10 16 9 C -0.15 -2.57 5.66 -26.61 -0.15 -2.72 16 10 C 0.18 3.52 2.19 -67.87 -0.15 3.37 16 11 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 12 N -0.72 -17.45 4.41 -53.37 -0.24 -17.69 16 13 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 14 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 15 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 16 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 17 Si 0.90 22.14 29.55 -169.99 -5.02 17.11 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 C -0.11 -1.87 2.46 -90.48 -0.22 -2.10 16 22 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 23 C -0.14 -2.24 9.03 37.16 0.34 -1.91 16 24 C 0.12 1.86 5.70 -3.71 -0.02 1.84 16 25 C 0.08 0.97 9.71 -16.96 -0.16 0.80 16 26 N -0.28 -3.39 12.48 30.88 0.39 -3.01 16 27 N -0.37 -4.15 3.99 -67.68 -0.27 -4.42 16 28 C 0.09 0.60 11.38 59.84 0.68 1.28 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.12 3.21 -51.93 -0.17 0.96 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.38 10.08 7.52 -40.82 -0.31 9.77 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.43 7.38 -51.93 -0.38 1.04 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 1.38 7.02 -51.93 -0.36 1.01 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.21 1.90 5.93 -52.49 -0.31 1.58 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 373.90 15.07 5.63 5.63 Total: -1.00 -34.08 373.90 -6.04 -40.12 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.99 Total: 7.87 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 0.36 Total: 5.01 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: 0.09 Total: -61.76 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.10 Total: -13.99 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.08 -6.04 -40.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036275627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.623 kcal (2) G-P(sol) polarization free energy of solvation -34.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds