Wall clock time and date at job start Tue Mar 31 2020 14:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35357 * 116.99898 * 2 1 4 4 C 1.38988 * 126.40518 * 263.26026 * 3 2 1 5 5 C 1.46919 * 126.49992 * 0.02562 * 4 3 2 6 6 O 1.21662 * 120.00019 * 29.06777 * 5 4 3 7 7 N 1.34782 * 120.00435 * 209.07429 * 5 4 3 8 8 C 1.46927 * 120.62641 * 356.84706 * 7 5 4 9 9 C 1.53196 * 108.77496 * 126.41726 * 8 7 5 10 10 C 1.53043 * 109.31170 * 54.63481 * 9 8 7 11 11 H 1.08999 * 109.45962 * 58.64014 * 10 9 8 12 12 N 1.46495 * 109.46163 * 178.61516 * 10 9 8 13 13 C 1.36933 * 120.00011 * 275.00416 * 12 10 9 14 14 H 1.07997 * 119.99741 * 359.97438 * 13 12 10 15 15 C 1.38813 * 119.99731 * 179.97438 * 13 12 10 16 16 N 1.31615 * 120.00449 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99736 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46942 * 60.00037 * 17 15 13 19 19 H 1.48497 * 109.47028 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47074 * 300.00176 * 17 15 13 21 21 C 1.53075 * 109.65514 * 298.70250 * 10 9 8 22 22 H 1.09004 * 109.39221 * 301.27049 * 21 10 9 23 23 C 1.53008 * 109.61842 * 181.17166 * 21 10 9 24 24 C 1.46920 * 120.63357 * 176.87731 * 7 5 4 25 25 C 1.41464 * 107.00745 * 179.75864 * 4 3 2 26 26 N 1.30321 * 108.13567 * 0.24044 * 25 4 3 27 27 N 1.34658 * 126.40224 * 83.44008 * 3 2 1 28 28 C 1.46493 * 125.74621 * 359.97438 * 27 3 2 29 29 H 1.08992 * 109.47397 * 304.66787 * 1 2 3 30 30 H 1.08997 * 109.46911 * 64.67081 * 1 2 3 31 31 H 1.09006 * 109.46576 * 184.66652 * 1 2 3 32 32 H 1.09004 * 109.58672 * 246.20349 * 8 7 5 33 33 H 1.09003 * 109.58621 * 6.48730 * 8 7 5 34 34 H 1.08993 * 109.49816 * 174.58696 * 9 8 7 35 35 H 1.08998 * 109.49668 * 294.65378 * 9 8 7 36 36 H 0.97006 * 120.00111 * 94.99492 * 12 10 9 37 37 H 0.97000 * 120.00216 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.46679 * 300.09974 * 23 21 10 39 39 H 1.08996 * 109.47513 * 60.10494 * 23 21 10 40 40 H 1.09001 * 109.46706 * 180.10838 * 23 21 10 41 41 H 1.09000 * 109.58514 * 353.36791 * 24 7 5 42 42 H 1.09001 * 109.59214 * 113.65065 * 24 7 5 43 43 H 1.07998 * 125.93187 * 180.22407 * 25 4 3 44 44 H 1.09003 * 109.47813 * 275.63996 * 28 27 3 45 45 H 1.09006 * 109.46992 * 35.63691 * 28 27 3 46 46 H 1.08995 * 109.47402 * 155.63547 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2061 0.0000 4 6 2.5349 1.8814 -1.1109 5 6 2.4852 1.4220 -2.5055 6 8 1.5836 0.6930 -2.8741 7 7 3.4385 1.8081 -3.3767 8 6 4.4947 2.7427 -2.9648 9 6 5.8570 2.1196 -3.2853 10 6 5.9014 1.7336 -4.7656 11 1 5.7302 2.6195 -5.3771 12 7 7.2147 1.1676 -5.0832 13 6 8.2578 1.9951 -5.4027 14 1 8.1122 3.0651 -5.4209 15 6 9.5024 1.4588 -5.7032 16 7 9.6800 0.1548 -5.6805 17 14 10.9252 2.5877 -6.1398 18 1 11.1949 3.5060 -5.0043 19 1 12.1362 1.7738 -6.4159 20 1 10.5758 3.3809 -7.3455 21 6 4.8145 0.6967 -5.0601 22 1 4.9719 -0.1808 -4.4328 23 6 4.8785 0.2898 -6.5337 24 6 3.4408 1.3028 -4.7563 25 6 3.0865 3.0979 -0.6450 26 7 2.9390 3.1409 0.6491 27 7 2.2959 1.9743 1.0767 28 6 1.9496 1.6467 2.4619 29 1 -0.3634 0.5845 0.8451 30 1 -0.3633 0.4396 -0.9289 31 1 -0.3633 -1.0243 0.0836 32 1 4.3849 3.6809 -3.5089 33 1 4.4192 2.9305 -1.8937 34 1 6.6459 2.8412 -3.0737 35 1 6.0034 1.2302 -2.6724 36 1 7.3454 0.2065 -5.0671 37 1 10.5497 -0.2199 -5.8901 38 1 4.7224 1.1680 -7.1602 39 1 5.8560 -0.1414 -6.7495 40 1 4.1025 -0.4470 -6.7411 41 1 2.6716 0.5385 -4.8668 42 1 3.2426 2.1231 -5.4462 43 1 3.5496 3.8588 -1.2557 44 1 0.9182 1.9397 2.6578 45 1 2.0586 0.5737 2.6197 46 1 2.6144 2.1828 3.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036275627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:06 Heat of formation + Delta-G solvation = 17.139607 kcal Electronic energy + Delta-G solvation = -28220.589228 eV Core-core repulsion = 24340.823525 eV Total energy + Delta-G solvation = -3879.765702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.76668 -40.87805 -39.26680 -38.78740 -36.15039 -34.86308 -34.00625 -33.00099 -31.22795 -30.86281 -28.96795 -27.86105 -27.13907 -26.63406 -24.82643 -23.13663 -22.98739 -22.30794 -21.22387 -20.50142 -19.05098 -18.67942 -18.15556 -17.47106 -17.11411 -16.78118 -16.56305 -16.00234 -15.72427 -15.69766 -15.57788 -15.39125 -14.91811 -14.89403 -14.60402 -14.22474 -13.93758 -13.72663 -13.58170 -13.45198 -13.03990 -12.93563 -12.81625 -12.76579 -12.58518 -12.42018 -12.38906 -12.17668 -11.96955 -11.79534 -11.61161 -11.37141 -11.10694 -10.94059 -10.78044 -10.44317 -9.85795 -9.50441 -8.92348 -7.87686 -5.15153 0.14785 1.02441 1.08603 1.50602 1.53021 1.58678 1.91647 2.28739 2.52993 2.61201 3.33633 3.45856 3.71517 3.84299 3.92152 3.97124 4.06343 4.12452 4.15770 4.28018 4.31075 4.34942 4.36879 4.43305 4.47748 4.58919 4.61095 4.67797 4.72125 4.83899 4.85345 4.88821 5.02255 5.02578 5.07239 5.22134 5.29921 5.38622 5.44518 5.55409 5.60694 5.69552 6.23638 6.33364 6.35916 6.47139 7.20766 7.39825 8.16614 8.39858 9.35972 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.003155 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.350430 B = 8872.816938 C = 9706.600732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.319 6.319 3 C 0.311 3.689 4 C -0.317 4.317 5 C 0.595 3.405 6 O -0.582 6.582 7 N -0.600 5.600 8 C 0.092 3.908 9 C -0.141 4.141 10 C 0.180 3.820 11 H 0.053 0.947 12 N -0.732 5.732 13 C -0.229 4.229 14 H 0.080 0.920 15 C -0.079 4.079 16 N -0.973 5.973 17 Si 0.968 3.032 18 H -0.278 1.278 19 H -0.302 1.302 20 H -0.278 1.278 21 C -0.101 4.101 22 H 0.046 0.954 23 C -0.128 4.128 24 C 0.131 3.869 25 C 0.086 3.914 26 N -0.289 5.289 27 N -0.366 5.366 28 C 0.082 3.918 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.369 0.631 37 H 0.248 0.752 38 H 0.061 0.939 39 H 0.039 0.961 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.232 0.768 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.998 5.646 14.733 26.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.228 6.228 3 C 0.136 3.864 4 C -0.332 4.332 5 C 0.386 3.614 6 O -0.463 6.463 7 N -0.331 5.331 8 C -0.030 4.030 9 C -0.182 4.182 10 C 0.071 3.929 11 H 0.071 0.929 12 N -0.371 5.371 13 C -0.361 4.361 14 H 0.098 0.902 15 C -0.270 4.270 16 N -0.624 5.624 17 Si 0.798 3.202 18 H -0.204 1.204 19 H -0.229 1.229 20 H -0.204 1.204 21 C -0.121 4.121 22 H 0.065 0.935 23 C -0.186 4.186 24 C 0.008 3.992 25 C -0.099 4.099 26 N -0.112 5.112 27 N -0.156 5.156 28 C -0.057 4.057 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.144 0.856 32 H 0.117 0.883 33 H 0.131 0.869 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.200 0.800 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.248 0.752 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -21.163 5.817 15.682 26.975 hybrid contribution 1.134 -0.746 -0.996 1.684 sum -20.030 5.071 14.686 25.349 Atomic orbital electron populations 1.23356 0.74795 1.05875 1.01846 1.85973 1.23361 1.20442 1.93043 1.19366 0.95180 0.84837 0.87018 1.19993 1.19752 1.00516 0.92988 1.17255 0.81069 0.78989 0.84125 1.90708 1.36571 1.39685 1.79384 1.47927 1.27162 1.46342 1.11641 1.22594 0.85059 0.92312 1.03057 1.22462 0.96728 1.00299 0.98729 1.20445 0.84252 0.94827 0.93364 0.92880 1.42606 1.06502 1.05631 1.82359 1.19595 0.89539 0.90754 1.36226 0.90218 1.25498 1.00428 0.96924 1.04177 1.69821 1.23315 1.11325 1.57988 0.85278 0.78850 0.77748 0.78304 1.20400 1.22878 1.20409 1.21621 0.94806 0.98117 0.97540 0.93503 1.21562 1.01168 1.01423 0.94475 1.21581 0.96341 0.99659 0.81640 1.24637 0.96517 0.96827 0.91929 1.77223 1.18420 1.01911 1.13671 1.49252 1.44484 1.13564 1.08264 1.22396 1.03803 1.03841 0.75678 0.91078 0.93391 0.85604 0.88350 0.86860 0.91224 0.94530 0.79958 0.94358 0.92011 0.94190 0.91784 0.89929 0.89426 0.75205 0.88123 0.88035 0.87107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 11.13 113.37 1.26 1.83 16 2 O -0.32 -7.74 10.20 -86.48 -0.88 -8.62 16 3 C 0.31 7.76 6.98 84.44 0.59 8.35 16 4 C -0.32 -8.53 5.73 -20.03 -0.11 -8.65 16 5 C 0.60 18.60 7.63 86.52 0.66 19.26 16 6 O -0.58 -21.32 16.20 -4.23 -0.07 -21.39 16 7 N -0.60 -17.07 2.97 -823.34 -2.45 -19.51 16 8 C 0.09 2.26 5.56 86.36 0.48 2.74 16 9 C -0.14 -4.71 5.66 30.67 0.17 -4.54 16 10 C 0.18 6.77 2.19 45.03 0.10 6.87 16 11 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 12 N -0.73 -36.00 4.41 -322.77 -1.42 -37.42 16 13 C -0.23 -12.32 9.93 84.03 0.83 -11.49 16 14 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 15 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 16 N -0.97 -59.81 13.06 21.65 0.28 -59.52 16 17 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 19 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 C -0.10 -3.41 2.46 -10.70 -0.03 -3.43 16 22 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 23 C -0.13 -4.23 9.03 71.98 0.65 -3.58 16 24 C 0.13 3.76 5.70 86.36 0.49 4.25 16 25 C 0.09 1.87 9.71 85.71 0.83 2.70 16 26 N -0.29 -6.43 12.48 -56.22 -0.70 -7.13 16 27 N -0.37 -7.42 3.99 -479.81 -1.91 -9.34 16 28 C 0.08 0.83 11.38 127.77 1.45 2.29 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.13 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.10 1.91 8.14 -2.38 -0.02 1.90 16 33 H 0.11 2.41 3.21 -2.39 -0.01 2.41 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.37 20.13 7.52 -92.70 -0.70 19.43 16 37 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.04 1.58 7.38 -2.39 -0.02 1.56 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.08 2.52 7.02 -2.39 -0.02 2.50 16 42 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.23 3.50 5.93 -2.91 -0.02 3.49 16 44 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -75.28 373.90 3.02 -72.25 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.30 Total: 30.28 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 7.85 Total: 12.61 kcal Atomic # 7 Polarization: -126.72 SS G_CDS: -6.21 Total: -132.92 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.95 Total: -30.01 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -75.28 3.02 -72.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036275627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.394 kcal (2) G-P(sol) polarization free energy of solvation -75.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds