Wall clock time and date at job start Tue Mar 31 2020 12:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46823 * 2 1 4 4 H 1.08995 * 109.52329 * 55.08462 * 3 2 1 5 5 C 1.53185 * 109.49777 * 294.99790 * 3 2 1 6 6 N 1.46927 * 108.89604 * 185.48567 * 5 3 2 7 7 C 1.34780 * 120.63110 * 233.51917 * 6 5 3 8 8 O 1.21588 * 120.00131 * 354.01272 * 7 6 5 9 9 C 1.47522 * 119.99549 * 174.01570 * 7 6 5 10 10 N 1.31933 * 126.46327 * 354.19342 * 9 7 6 11 11 N 1.28455 * 110.20903 * 179.97438 * 10 9 7 12 12 H 0.97005 * 124.91309 * 179.97438 * 11 10 9 13 13 C 1.35839 * 110.17188 * 0.02562 * 11 10 9 14 14 C 1.50694 * 126.46174 * 179.97438 * 13 11 10 15 15 C 1.35784 * 107.07893 * 359.74601 * 13 11 10 16 16 O 1.36082 * 127.27166 * 180.27466 * 15 13 11 17 17 C 1.46930 * 118.73546 * 53.53988 * 6 5 3 18 18 C 1.53192 * 108.77435 * 306.39025 * 17 6 5 19 19 C 1.53041 * 109.30942 * 54.63704 * 18 17 6 20 20 H 1.08997 * 109.46223 * 58.64506 * 19 18 17 21 21 N 1.46507 * 109.45470 * 178.61101 * 19 18 17 22 22 C 1.36931 * 120.00239 * 274.99552 * 21 19 18 23 23 H 1.08002 * 119.99908 * 0.02562 * 22 21 19 24 24 C 1.38817 * 120.00294 * 180.02562 * 22 21 19 25 25 N 1.31619 * 119.99659 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00110 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47263 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.46961 * 120.00040 * 26 24 22 29 29 H 1.48494 * 109.47439 * 239.99986 * 26 24 22 30 30 H 1.08995 * 109.47108 * 299.99827 * 1 2 3 31 31 H 1.09001 * 109.47139 * 60.00284 * 1 2 3 32 32 H 1.09003 * 109.46569 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47108 * 240.00173 * 2 1 3 34 34 H 1.09001 * 109.47139 * 119.99716 * 2 1 3 35 35 H 1.09000 * 109.58949 * 65.62627 * 5 3 2 36 36 H 1.09000 * 109.59029 * 305.34918 * 5 3 2 37 37 H 1.09006 * 109.47268 * 89.97308 * 14 13 11 38 38 H 1.08997 * 109.46986 * 209.97173 * 14 13 11 39 39 H 1.08993 * 109.47459 * 329.97382 * 14 13 11 40 40 H 0.96701 * 113.99657 * 270.13344 * 16 15 13 41 41 H 1.08993 * 109.58823 * 66.17944 * 17 6 5 42 42 H 1.09000 * 109.58086 * 186.60442 * 17 6 5 43 43 H 1.09001 * 109.49683 * 174.58556 * 18 17 6 44 44 H 1.09004 * 109.49964 * 294.65722 * 18 17 6 45 45 H 0.96999 * 119.99959 * 95.00930 * 21 19 18 46 46 H 0.97001 * 119.99899 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6070 1.9820 0.8424 5 6 1.6350 2.1280 -1.3087 6 7 2.2415 3.4655 -1.3528 7 6 1.4816 4.5573 -1.5698 8 8 0.3024 4.4336 -1.8391 9 6 2.0807 5.9025 -1.4805 10 7 3.3095 6.1896 -1.0955 11 7 3.5020 7.4590 -1.1357 12 1 4.3306 7.9027 -0.8962 13 6 2.3768 8.0901 -1.5611 14 6 2.1971 9.5753 -1.7421 15 6 1.4462 7.1300 -1.7974 16 8 0.1727 7.3085 -2.2426 17 6 3.6923 3.5901 -1.1564 18 6 4.0744 2.8915 0.1524 19 6 3.5657 1.4484 0.1229 20 1 3.9987 0.9281 -0.7314 21 7 3.9583 0.7673 1.3592 22 6 5.1960 0.1904 1.4598 23 1 5.8831 0.2378 0.6279 24 6 5.5677 -0.4554 2.6311 25 7 4.7302 -0.5135 3.6447 26 14 7.2565 -1.2418 2.7685 27 1 8.0022 -1.0379 1.5006 28 1 8.0045 -0.6156 3.8882 29 1 7.1058 -2.6964 3.0262 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5496 2.2173 -1.3539 36 1 1.9885 1.5384 -2.1547 37 1 2.4773 9.8541 -2.7579 38 1 1.1540 9.8389 -1.5676 39 1 2.8300 10.1071 -1.0317 40 1 -0.4772 7.4302 -1.5369 41 1 4.2155 3.1189 -1.9884 42 1 3.9642 4.6442 -1.1009 43 1 5.1588 2.8928 0.2623 44 1 3.6229 3.4198 0.9921 45 1 3.3412 0.7249 2.1065 46 1 4.9901 -0.9644 4.4633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037819693.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:03 Heat of formation + Delta-G solvation = 13.123297 kcal Electronic energy + Delta-G solvation = -28190.697404 eV Core-core repulsion = 24310.757542 eV Total energy + Delta-G solvation = -3879.939863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.95139 -39.78427 -37.74779 -37.22561 -34.66949 -33.77117 -32.87425 -31.64725 -31.21761 -29.39753 -28.67488 -27.18224 -25.57803 -23.88906 -23.49198 -22.28451 -21.55042 -20.71903 -19.80019 -18.97959 -18.43079 -17.33252 -17.05382 -16.59425 -16.11607 -15.77371 -14.94467 -14.72685 -14.45737 -14.16745 -14.00914 -13.85007 -13.66232 -13.43395 -13.24286 -13.08455 -13.02035 -12.90821 -12.51686 -12.31235 -12.05336 -11.59487 -11.23432 -11.15355 -10.89745 -10.81366 -10.63207 -10.38451 -10.22299 -10.14438 -10.06733 -9.80959 -9.61370 -9.54982 -9.50681 -8.96920 -8.82670 -8.32881 -6.91291 -5.74696 -3.02557 1.34734 1.65966 2.44569 3.13829 3.38488 3.43355 3.49295 3.51301 4.00046 4.31180 4.43560 4.60239 4.66299 5.03357 5.07825 5.22413 5.32469 5.38317 5.41428 5.45297 5.53264 5.61578 5.65639 5.69474 5.76641 5.80749 5.94670 6.00302 6.16157 6.21865 6.28247 6.43112 6.46289 6.47917 6.55317 6.60925 6.74211 6.83345 6.92933 7.04218 7.15900 7.48378 7.52562 7.70528 7.72369 8.31517 8.43810 9.55183 10.13729 10.48892 11.47993 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015743 B = 0.003398 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.165916 B = 8238.243298 C = 9613.564354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.103 4.103 4 H 0.069 0.931 5 C 0.120 3.880 6 N -0.591 5.591 7 C 0.598 3.402 8 O -0.535 6.535 9 C -0.018 4.018 10 N -0.237 5.237 11 N -0.378 5.378 12 H 0.449 0.551 13 C -0.010 4.010 14 C -0.079 4.079 15 C 0.044 3.956 16 O -0.452 6.452 17 C 0.075 3.925 18 C -0.143 4.143 19 C 0.182 3.818 20 H 0.047 0.953 21 N -0.721 5.721 22 C -0.234 4.234 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.293 1.293 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.387 0.613 41 H 0.059 0.941 42 H 0.128 0.872 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.383 0.617 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.764 18.764 -10.864 22.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.002 4.002 6 N -0.323 5.323 7 C 0.384 3.616 8 O -0.410 6.410 9 C -0.179 4.179 10 N -0.073 5.073 11 N -0.094 5.094 12 H 0.294 0.706 13 C -0.136 4.136 14 C -0.137 4.137 15 C -0.011 4.011 16 O -0.258 6.258 17 C -0.049 4.049 18 C -0.185 4.185 19 C 0.071 3.929 20 H 0.065 0.935 21 N -0.361 5.361 22 C -0.365 4.365 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.581 5.581 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.241 0.759 41 H 0.077 0.923 42 H 0.145 0.855 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.217 0.783 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.067 18.037 -11.251 21.854 hybrid contribution 0.500 0.101 0.852 0.994 sum -4.566 18.138 -10.399 21.401 Atomic orbital electron populations 1.21846 0.96824 1.01011 1.01321 1.21445 0.94359 0.95689 1.03444 1.21776 0.97760 0.96176 0.96642 0.91276 1.21779 0.99297 0.81275 0.97879 1.47986 1.08981 1.06141 1.69163 1.16882 0.85440 0.81919 0.77401 1.90777 1.15360 1.85785 1.49084 1.22480 0.91972 0.95871 1.07614 1.73427 1.17978 0.96175 1.19707 1.43348 1.13299 1.04242 1.48532 0.70555 1.21565 0.88994 0.96660 1.06368 1.20289 1.04022 0.86452 1.02954 1.17750 0.87968 0.89338 1.06081 1.84891 1.12961 1.93465 1.34449 1.22765 0.78510 1.05280 0.98360 1.22572 1.01828 0.98650 0.95417 1.20236 0.90733 0.90864 0.91033 0.93544 1.42420 1.16509 1.64585 1.12598 1.19270 0.91841 1.26941 0.98452 0.91224 1.24716 0.98108 1.01717 0.96473 1.69672 1.35178 1.48656 1.04613 0.86163 0.84130 0.78894 0.77288 1.20623 1.22029 1.21975 0.93020 0.93152 0.93193 0.92448 0.89812 0.89182 0.91592 0.90169 0.89556 0.90944 0.75869 0.92284 0.85527 0.90885 0.92451 0.78266 0.93657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.67 37.16 0.36 -1.83 16 2 C -0.11 -1.87 5.32 -26.73 -0.14 -2.01 16 3 C -0.10 -1.78 1.93 -90.48 -0.17 -1.96 16 4 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 5 C 0.12 1.90 5.30 -3.71 -0.02 1.88 16 6 N -0.59 -9.50 2.97 -174.00 -0.52 -10.02 16 7 C 0.60 10.03 7.69 -12.47 -0.10 9.94 16 8 O -0.53 -10.08 15.99 3.53 0.06 -10.02 16 9 C -0.02 -0.26 6.88 -82.69 -0.57 -0.83 16 10 N -0.24 -2.93 8.60 33.45 0.29 -2.64 16 11 N -0.38 -3.24 6.87 33.71 0.23 -3.01 16 12 H 0.45 2.09 8.96 -190.44 -1.71 0.38 16 13 C -0.01 -0.08 7.27 -81.70 -0.59 -0.68 16 14 C -0.08 -0.37 10.44 36.00 0.38 0.00 16 15 C 0.04 0.54 7.28 -39.11 -0.28 0.26 16 16 O -0.45 -5.30 13.21 -21.76 -0.29 -5.59 16 17 C 0.07 1.14 6.33 -3.71 -0.02 1.12 16 18 C -0.14 -2.58 5.66 -26.61 -0.15 -2.73 16 19 C 0.18 3.57 2.19 -67.87 -0.15 3.42 16 20 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 21 N -0.72 -17.57 4.34 -53.36 -0.23 -17.80 16 22 C -0.23 -6.33 9.93 -15.06 -0.15 -6.48 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 26 Si 0.90 22.22 29.55 -169.99 -5.02 17.19 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.67 6.70 -51.93 -0.35 0.32 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.66 7.24 -51.93 -0.38 1.28 16 35 H 0.09 1.45 5.76 -51.93 -0.30 1.15 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 40 H 0.39 2.95 9.07 45.56 0.41 3.37 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.13 1.82 3.73 -112.40 -0.42 1.40 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.38 10.08 7.53 -40.82 -0.31 9.77 16 46 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -34.47 370.06 -8.56 -43.03 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -7.66 Total: 10.83 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.71 Total: -0.40 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: 0.49 Total: -60.61 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.23 Total: -15.61 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.47 -8.56 -43.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037819693.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.151 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds