Wall clock time and date at job start Tue Mar 31 2020 12:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46823 * 2 1 4 4 H 1.08995 * 109.52329 * 55.08462 * 3 2 1 5 5 C 1.53185 * 109.49777 * 294.99790 * 3 2 1 6 6 N 1.46927 * 108.89604 * 185.48567 * 5 3 2 7 7 C 1.34780 * 120.63110 * 233.51917 * 6 5 3 8 8 O 1.21588 * 120.00131 * 354.01272 * 7 6 5 9 9 C 1.47522 * 119.99549 * 174.01570 * 7 6 5 10 10 N 1.31933 * 126.46327 * 354.19342 * 9 7 6 11 11 N 1.28455 * 110.20903 * 179.97438 * 10 9 7 12 12 H 0.97005 * 124.91309 * 179.97438 * 11 10 9 13 13 C 1.35839 * 110.17188 * 0.02562 * 11 10 9 14 14 C 1.50694 * 126.46174 * 179.97438 * 13 11 10 15 15 C 1.35784 * 107.07893 * 359.74601 * 13 11 10 16 16 O 1.36082 * 127.27166 * 180.27466 * 15 13 11 17 17 C 1.46930 * 118.73546 * 53.53988 * 6 5 3 18 18 C 1.53192 * 108.77435 * 306.39025 * 17 6 5 19 19 C 1.53041 * 109.30942 * 54.63704 * 18 17 6 20 20 H 1.08997 * 109.46223 * 58.64506 * 19 18 17 21 21 N 1.46507 * 109.45470 * 178.61101 * 19 18 17 22 22 C 1.36931 * 120.00239 * 274.99552 * 21 19 18 23 23 H 1.08002 * 119.99908 * 0.02562 * 22 21 19 24 24 C 1.38817 * 120.00294 * 180.02562 * 22 21 19 25 25 N 1.31619 * 119.99659 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00110 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47263 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.46961 * 120.00040 * 26 24 22 29 29 H 1.48494 * 109.47439 * 239.99986 * 26 24 22 30 30 H 1.08995 * 109.47108 * 299.99827 * 1 2 3 31 31 H 1.09001 * 109.47139 * 60.00284 * 1 2 3 32 32 H 1.09003 * 109.46569 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47108 * 240.00173 * 2 1 3 34 34 H 1.09001 * 109.47139 * 119.99716 * 2 1 3 35 35 H 1.09000 * 109.58949 * 65.62627 * 5 3 2 36 36 H 1.09000 * 109.59029 * 305.34918 * 5 3 2 37 37 H 1.09006 * 109.47268 * 89.97308 * 14 13 11 38 38 H 1.08997 * 109.46986 * 209.97173 * 14 13 11 39 39 H 1.08993 * 109.47459 * 329.97382 * 14 13 11 40 40 H 0.96701 * 113.99657 * 270.13344 * 16 15 13 41 41 H 1.08993 * 109.58823 * 66.17944 * 17 6 5 42 42 H 1.09000 * 109.58086 * 186.60442 * 17 6 5 43 43 H 1.09001 * 109.49683 * 174.58556 * 18 17 6 44 44 H 1.09004 * 109.49964 * 294.65722 * 18 17 6 45 45 H 0.96999 * 119.99959 * 95.00930 * 21 19 18 46 46 H 0.97001 * 119.99899 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6070 1.9820 0.8424 5 6 1.6350 2.1280 -1.3087 6 7 2.2415 3.4655 -1.3528 7 6 1.4816 4.5573 -1.5698 8 8 0.3024 4.4336 -1.8391 9 6 2.0807 5.9025 -1.4805 10 7 3.3095 6.1896 -1.0955 11 7 3.5020 7.4590 -1.1357 12 1 4.3306 7.9027 -0.8962 13 6 2.3768 8.0901 -1.5611 14 6 2.1971 9.5753 -1.7421 15 6 1.4462 7.1300 -1.7974 16 8 0.1727 7.3085 -2.2426 17 6 3.6923 3.5901 -1.1564 18 6 4.0744 2.8915 0.1524 19 6 3.5657 1.4484 0.1229 20 1 3.9987 0.9281 -0.7314 21 7 3.9583 0.7673 1.3592 22 6 5.1960 0.1904 1.4598 23 1 5.8831 0.2378 0.6279 24 6 5.5677 -0.4554 2.6311 25 7 4.7302 -0.5135 3.6447 26 14 7.2565 -1.2418 2.7685 27 1 8.0022 -1.0379 1.5006 28 1 8.0045 -0.6156 3.8882 29 1 7.1058 -2.6964 3.0262 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5496 2.2173 -1.3539 36 1 1.9885 1.5384 -2.1547 37 1 2.4773 9.8541 -2.7579 38 1 1.1540 9.8389 -1.5676 39 1 2.8300 10.1071 -1.0317 40 1 -0.4772 7.4302 -1.5369 41 1 4.2155 3.1189 -1.9884 42 1 3.9642 4.6442 -1.1009 43 1 5.1588 2.8928 0.2623 44 1 3.6229 3.4198 0.9921 45 1 3.3412 0.7249 2.1065 46 1 4.9901 -0.9644 4.4633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037819693.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:02 Heat of formation + Delta-G solvation = -12.677536 kcal Electronic energy + Delta-G solvation = -28191.816212 eV Core-core repulsion = 24310.757542 eV Total energy + Delta-G solvation = -3881.058671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.80389 -41.10643 -39.10520 -38.15315 -36.19553 -35.37306 -33.65557 -33.42594 -32.06900 -31.05783 -30.04690 -27.84289 -27.06384 -25.48353 -24.85157 -23.70891 -22.36057 -22.17802 -21.18218 -20.21190 -19.38499 -19.03819 -18.13343 -17.76098 -17.08820 -16.96916 -16.75403 -15.99379 -15.68483 -15.51527 -15.30875 -15.19079 -14.79601 -14.72362 -14.54403 -14.41417 -13.94360 -13.70741 -13.61251 -13.59688 -13.23463 -13.05803 -12.87256 -12.75819 -12.53933 -12.35772 -12.08170 -11.87457 -11.80975 -11.61046 -11.52317 -11.43598 -11.10461 -11.02170 -10.66171 -10.45556 -9.75726 -9.63930 -8.94318 -7.90126 -5.17547 0.34936 0.86290 1.48418 1.48839 1.58575 1.68722 2.02901 2.20523 2.58492 3.04633 3.43367 3.57179 3.68400 3.77236 3.79480 3.90807 4.03571 4.14120 4.31288 4.34351 4.36019 4.46000 4.51103 4.64936 4.74925 4.78833 4.79566 4.82738 4.86547 4.93635 5.00899 5.07879 5.09892 5.16506 5.25193 5.32237 5.38236 5.50091 5.52296 5.58335 5.67307 6.03941 6.30657 6.33736 6.73681 6.80471 7.07677 7.37701 8.13280 8.37766 9.33636 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015743 B = 0.003398 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.165916 B = 8238.243298 C = 9613.564354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.091 4.091 4 H 0.051 0.949 5 C 0.126 3.874 6 N -0.594 5.594 7 C 0.593 3.407 8 O -0.563 6.563 9 C -0.052 4.052 10 N -0.251 5.251 11 N -0.356 5.356 12 H 0.467 0.533 13 C 0.017 3.983 14 C -0.078 4.078 15 C 0.018 3.982 16 O -0.465 6.465 17 C 0.083 3.917 18 C -0.131 4.131 19 C 0.178 3.822 20 H 0.046 0.954 21 N -0.730 5.730 22 C -0.228 4.228 23 H 0.076 0.924 24 C -0.077 4.077 25 N -0.970 5.970 26 Si 0.968 3.032 27 H -0.265 1.265 28 H -0.297 1.297 29 H -0.297 1.297 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.400 0.600 41 H 0.071 0.929 42 H 0.143 0.857 43 H 0.064 0.936 44 H 0.040 0.960 45 H 0.370 0.630 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.953 20.874 -12.448 24.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.111 4.111 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.325 5.325 7 C 0.381 3.619 8 O -0.441 6.441 9 C -0.212 4.212 10 N -0.089 5.089 11 N -0.076 5.076 12 H 0.317 0.683 13 C -0.110 4.110 14 C -0.136 4.136 15 C -0.038 4.038 16 O -0.273 6.273 17 C -0.040 4.040 18 C -0.172 4.172 19 C 0.069 3.931 20 H 0.064 0.936 21 N -0.369 5.369 22 C -0.360 4.360 23 H 0.094 0.906 24 C -0.269 4.269 25 N -0.622 5.622 26 Si 0.798 3.202 27 H -0.189 1.189 28 H -0.224 1.224 29 H -0.225 1.225 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.257 0.743 41 H 0.090 0.910 42 H 0.159 0.841 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.202 0.798 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.232 20.177 -12.875 24.306 hybrid contribution 0.226 -0.423 1.309 1.394 sum -4.006 19.754 -11.566 23.238 Atomic orbital electron populations 1.21780 0.94737 1.02007 1.01756 1.21348 0.96179 0.94878 1.02004 1.21619 0.95843 0.96607 0.97058 0.93006 1.21704 0.99374 0.81485 0.97134 1.48042 1.09195 1.06173 1.69137 1.17255 0.85174 0.82879 0.76602 1.90740 1.16501 1.86419 1.50463 1.22284 0.93276 0.95392 1.10221 1.73169 1.17375 0.98110 1.20221 1.43438 1.14131 1.03197 1.46801 0.68298 1.22048 0.87535 0.98003 1.03444 1.20499 1.05245 0.83404 1.04478 1.18019 0.88744 0.89467 1.07522 1.84841 1.13369 1.93431 1.35642 1.22747 0.78240 1.06096 0.96915 1.22353 1.00921 0.97359 0.96554 1.20439 0.92405 0.91294 0.88919 0.93645 1.42574 1.15608 1.65029 1.13668 1.19627 0.92580 1.25585 0.98250 0.90592 1.25478 1.01622 1.03249 0.96505 1.69831 1.37044 1.50257 1.05056 0.85144 0.80200 0.77355 0.77521 1.18947 1.22412 1.22468 0.93529 0.91729 0.91944 0.91674 0.93316 0.89197 0.90120 0.88939 0.88847 0.88178 0.74323 0.91027 0.84077 0.91744 0.94094 0.79774 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 9.67 71.98 0.70 -3.41 16 2 C -0.11 -3.59 5.32 30.60 0.16 -3.42 16 3 C -0.09 -3.19 1.93 -10.71 -0.02 -3.21 16 4 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 5 C 0.13 3.90 5.30 86.36 0.46 4.36 16 6 N -0.59 -18.84 2.97 -822.68 -2.45 -21.29 16 7 C 0.59 19.83 7.69 86.69 0.67 20.50 16 8 O -0.56 -21.37 15.99 -2.31 -0.04 -21.41 16 9 C -0.05 -1.47 6.88 42.45 0.29 -1.18 16 10 N -0.25 -5.83 8.60 -48.08 -0.41 -6.24 16 11 N -0.36 -5.15 6.87 -47.27 -0.32 -5.47 16 12 H 0.47 2.77 8.96 -219.99 -1.97 0.80 16 13 C 0.02 0.25 7.27 41.37 0.30 0.55 16 14 C -0.08 -0.43 10.44 71.23 0.74 0.31 16 15 C 0.02 0.42 7.28 22.57 0.16 0.59 16 16 O -0.47 -10.51 13.21 -92.80 -1.23 -11.73 16 17 C 0.08 2.48 6.33 86.36 0.55 3.02 16 18 C -0.13 -4.71 5.66 30.67 0.17 -4.54 16 19 C 0.18 7.06 2.19 45.03 0.10 7.16 16 20 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 21 N -0.73 -36.46 4.34 -322.75 -1.40 -37.85 16 22 C -0.23 -12.47 9.93 84.04 0.83 -11.64 16 23 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 24 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 25 N -0.97 -59.53 13.06 21.65 0.28 -59.25 16 26 Si 0.97 46.09 29.55 68.60 2.03 48.11 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 29 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.64 6.70 -2.39 -0.02 1.63 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 2.00 7.24 -2.39 -0.02 1.98 16 35 H 0.09 2.84 5.76 -2.39 -0.01 2.83 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.40 5.89 9.07 -74.06 -0.67 5.22 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.14 3.89 3.73 -80.62 -0.30 3.59 16 43 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.37 20.29 7.53 -92.71 -0.70 19.59 16 46 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -76.07 370.06 -0.55 -76.62 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: -2.60 Total: 33.32 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 5.58 Total: 5.19 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -4.30 Total: -130.10 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -1.26 Total: -33.14 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -76.07 -0.55 -76.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037819693.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.939 kcal (2) G-P(sol) polarization free energy of solvation -76.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds