Wall clock time and date at job start Tue Mar 31 2020 12:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47195 * 2 1 4 4 H 1.08995 * 109.49658 * 55.06300 * 3 2 1 5 5 C 1.53197 * 109.49496 * 294.99909 * 3 2 1 6 6 N 1.46923 * 108.77167 * 185.37967 * 5 3 2 7 7 C 1.34781 * 120.63358 * 233.58118 * 6 5 3 8 8 O 1.21593 * 119.99392 * 7.02774 * 7 6 5 9 9 C 1.47520 * 120.00533 * 187.01715 * 7 6 5 10 10 N 1.31933 * 126.45759 * 6.72642 * 9 7 6 11 11 N 1.28455 * 110.21062 * 180.13884 * 10 9 7 12 12 H 0.97004 * 124.92114 * 179.82106 * 11 10 9 13 13 C 1.35836 * 110.16710 * 359.55388 * 11 10 9 14 14 C 1.50698 * 126.46382 * 180.23312 * 13 11 10 15 15 C 1.35788 * 107.07898 * 0.26843 * 13 11 10 16 16 O 1.36082 * 127.26842 * 180.02562 * 15 13 11 17 17 C 1.46930 * 118.74311 * 53.86350 * 6 5 3 18 18 C 1.53628 * 108.54122 * 306.09535 * 17 6 5 19 19 C 1.53037 * 109.24370 * 54.84747 * 18 17 6 20 20 H 1.09000 * 109.44906 * 178.50079 * 19 18 17 21 21 N 1.46505 * 109.45702 * 58.53736 * 19 18 17 22 22 C 1.36934 * 120.00086 * 84.92972 * 21 19 18 23 23 H 1.08007 * 119.99877 * 0.02562 * 22 21 19 24 24 C 1.38813 * 120.00336 * 180.02562 * 22 21 19 25 25 N 1.31611 * 120.00244 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99664 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.46591 * 89.99917 * 26 24 22 28 28 H 1.48498 * 109.47034 * 209.99896 * 26 24 22 29 29 H 1.48497 * 109.47171 * 330.00326 * 26 24 22 30 30 H 1.08994 * 109.47210 * 300.00053 * 1 2 3 31 31 H 1.09003 * 109.47131 * 60.00364 * 1 2 3 32 32 H 1.09002 * 109.47126 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47282 * 239.99649 * 2 1 3 34 34 H 1.08996 * 109.47338 * 119.99989 * 2 1 3 35 35 H 1.08997 * 109.58541 * 65.59656 * 5 3 2 36 36 H 1.08997 * 109.70298 * 305.23333 * 5 3 2 37 37 H 1.08997 * 109.47481 * 90.01935 * 14 13 11 38 38 H 1.08999 * 109.47555 * 210.02879 * 14 13 11 39 39 H 1.09004 * 109.46954 * 330.02085 * 14 13 11 40 40 H 0.96697 * 114.00785 * 89.96697 * 16 15 13 41 41 H 1.09004 * 109.58764 * 65.91882 * 17 6 5 42 42 H 1.08997 * 109.59114 * 186.35144 * 17 6 5 43 43 H 1.09008 * 109.62601 * 294.86553 * 18 17 6 44 44 H 1.08996 * 109.45897 * 174.74087 * 18 17 6 45 45 H 0.96995 * 120.00018 * 264.92956 * 21 19 18 46 46 H 0.97001 * 119.99899 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 0.8423 5 6 1.6350 2.1279 -1.3088 6 7 2.2408 3.4658 -1.3490 7 6 1.4805 4.5579 -1.5636 8 8 0.2692 4.4578 -1.5987 9 6 2.1178 5.8744 -1.7555 10 7 3.4111 6.1108 -1.8655 11 7 3.6207 7.3686 -2.0204 12 1 4.4946 7.7778 -2.1202 13 6 2.4412 8.0422 -2.0300 14 6 2.2604 9.5294 -2.1938 15 6 1.4557 7.1231 -1.8635 16 8 0.1153 7.3523 -1.8117 17 6 3.6922 3.5903 -1.1571 18 6 4.0734 2.8889 0.1555 19 6 3.5655 1.4457 0.1221 20 1 3.8573 0.9368 1.0408 21 7 4.1486 0.7496 -1.0277 22 6 5.3869 0.1744 -0.9239 23 1 5.9336 0.2335 0.0057 24 6 5.9397 -0.4846 -2.0134 25 7 7.1296 -1.0379 -1.9135 26 14 4.9938 -0.5874 -3.6210 27 1 5.3340 0.5819 -4.4710 28 1 5.3598 -1.8390 -4.3314 29 1 3.5360 -0.5866 -3.3385 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.5496 2.2168 -1.3541 36 1 1.9893 1.5408 -2.1561 37 1 2.1566 9.7684 -3.2521 38 1 1.3651 9.8476 -1.6598 39 1 3.1291 10.0478 -1.7877 40 1 -0.3237 7.3157 -2.6726 41 1 4.2128 3.1191 -1.9908 42 1 3.9645 4.6443 -1.1023 43 1 3.6206 3.4145 0.9963 44 1 5.1577 2.8906 0.2665 45 1 3.6575 0.6962 -1.8624 46 1 7.5160 -1.4981 -2.6750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037819694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:07 Heat of formation + Delta-G solvation = 18.161445 kcal Electronic energy + Delta-G solvation = -28707.795301 eV Core-core repulsion = 24828.073908 eV Total energy + Delta-G solvation = -3879.721392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.91376 -39.86616 -37.85490 -37.24199 -34.51628 -33.80955 -32.85213 -31.70043 -31.18727 -29.73908 -28.77472 -27.15205 -25.76535 -23.87430 -23.35467 -22.84766 -21.52630 -20.76211 -19.59274 -18.64445 -18.11085 -17.78811 -17.26162 -16.49557 -16.12896 -15.77212 -15.03371 -14.65274 -14.43268 -14.34064 -14.04452 -13.98009 -13.59765 -13.38472 -13.32612 -13.19209 -12.98964 -12.89513 -12.46630 -12.42867 -12.20462 -11.56026 -11.53113 -11.19798 -10.98716 -10.86130 -10.71812 -10.48357 -10.29367 -10.18273 -10.14107 -9.75772 -9.71246 -9.52290 -9.46803 -8.95080 -8.85450 -8.23767 -7.23452 -5.76123 -3.10393 1.39062 1.68256 2.48960 3.17883 3.36407 3.39717 3.41302 3.45375 4.04455 4.33994 4.47033 4.59306 4.70043 5.02841 5.07354 5.16690 5.20449 5.33770 5.40343 5.43511 5.48870 5.55561 5.63414 5.66350 5.73516 5.78035 5.83824 5.92596 6.03266 6.11891 6.24992 6.28802 6.34242 6.44365 6.51847 6.58011 6.69480 6.72941 6.79619 6.85029 7.02652 7.50323 7.56134 7.73985 8.01165 8.35239 8.43282 9.22107 9.94943 10.15463 11.42527 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.004191 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.844888 B = 6679.321667 C = 7779.696570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.072 0.928 5 C 0.118 3.882 6 N -0.590 5.590 7 C 0.597 3.403 8 O -0.537 6.537 9 C -0.020 4.020 10 N -0.234 5.234 11 N -0.378 5.378 12 H 0.449 0.551 13 C -0.011 4.011 14 C -0.081 4.081 15 C 0.044 3.956 16 O -0.453 6.453 17 C 0.093 3.907 18 C -0.148 4.148 19 C 0.184 3.816 20 H 0.059 0.941 21 N -0.743 5.743 22 C -0.237 4.237 23 H 0.090 0.910 24 C 0.006 3.994 25 N -0.935 5.935 26 Si 0.877 3.123 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.386 0.614 41 H 0.075 0.925 42 H 0.114 0.886 43 H 0.049 0.951 44 H 0.077 0.923 45 H 0.360 0.640 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.681 19.457 -0.123 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.091 0.909 5 C -0.004 4.004 6 N -0.322 5.322 7 C 0.383 3.617 8 O -0.413 6.413 9 C -0.181 4.181 10 N -0.071 5.071 11 N -0.095 5.095 12 H 0.295 0.705 13 C -0.137 4.137 14 C -0.139 4.139 15 C -0.012 4.012 16 O -0.258 6.258 17 C -0.029 4.029 18 C -0.189 4.189 19 C 0.074 3.926 20 H 0.077 0.923 21 N -0.387 5.387 22 C -0.367 4.367 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.583 5.583 26 Si 0.708 3.292 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.241 0.759 41 H 0.093 0.907 42 H 0.131 0.869 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.194 0.806 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.062 18.807 0.544 21.336 hybrid contribution -0.664 0.315 -1.810 1.954 sum -10.726 19.122 -1.266 21.962 Atomic orbital electron populations 1.21857 0.96618 1.01100 1.01536 1.21434 0.94492 0.95710 1.03285 1.21794 0.97466 0.96142 0.97197 0.90917 1.21719 0.99111 0.81465 0.98113 1.48007 1.09299 1.05911 1.68970 1.16878 0.85871 0.81713 0.77259 1.90769 1.12937 1.85080 1.52548 1.22456 0.89815 0.95750 1.10126 1.73695 1.17708 0.97532 1.18174 1.43328 1.08904 1.04343 1.52890 0.70541 1.21559 0.86532 0.96719 1.08925 1.20309 1.03929 0.86482 1.03182 1.17746 0.85038 0.89476 1.08918 1.84870 1.14244 1.92229 1.34428 1.22504 0.78025 1.03452 0.98956 1.22562 1.02027 0.98460 0.95824 1.20207 0.89415 0.90904 0.92054 0.92329 1.42830 1.19530 1.65845 1.10485 1.19068 0.91833 1.26619 0.99159 0.89186 1.24612 0.96453 1.00411 0.97466 1.69688 1.16333 1.41556 1.30726 0.86672 0.79718 0.77357 0.85497 1.21222 1.21794 1.20360 0.93081 0.92840 0.93097 0.91119 0.91543 0.89194 0.91529 0.90320 0.89312 0.90896 0.75921 0.90653 0.86901 0.93204 0.90413 0.80632 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.75 5.19 -26.73 -0.14 -1.89 16 3 C -0.11 -1.74 2.14 -90.50 -0.19 -1.93 16 4 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 5 C 0.12 2.00 5.03 -3.71 -0.02 1.99 16 6 N -0.59 -10.13 2.97 -173.73 -0.52 -10.64 16 7 C 0.60 10.42 7.68 -12.47 -0.10 10.33 16 8 O -0.54 -10.39 15.97 3.56 0.06 -10.33 16 9 C -0.02 -0.31 6.83 -82.70 -0.56 -0.87 16 10 N -0.23 -3.09 8.69 33.45 0.29 -2.80 16 11 N -0.38 -3.47 6.87 33.71 0.23 -3.24 16 12 H 0.45 2.36 8.96 -190.44 -1.71 0.66 16 13 C -0.01 -0.10 7.27 -81.70 -0.59 -0.70 16 14 C -0.08 -0.41 10.44 36.00 0.38 -0.04 16 15 C 0.04 0.56 7.28 -39.12 -0.28 0.27 16 16 O -0.45 -5.47 13.21 -21.73 -0.29 -5.76 16 17 C 0.09 1.59 5.88 -3.48 -0.02 1.57 16 18 C -0.15 -2.56 5.79 -26.39 -0.15 -2.71 16 19 C 0.18 3.45 2.53 -67.89 -0.17 3.28 16 20 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 21 N -0.74 -16.68 3.52 -53.38 -0.19 -16.87 16 22 C -0.24 -6.40 10.41 -15.06 -0.16 -6.55 16 23 H 0.09 2.62 8.06 -52.48 -0.42 2.19 16 24 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 25 N -0.93 -28.89 13.97 55.49 0.78 -28.12 16 26 Si 0.88 21.94 27.74 -169.99 -4.71 17.22 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 29 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.71 6.70 -51.93 -0.35 0.36 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.25 7.70 -51.93 -0.40 0.85 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.51 5.71 -51.93 -0.30 1.21 16 36 H 0.07 1.20 6.65 -51.93 -0.35 0.86 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.39 3.07 9.07 45.56 0.41 3.48 16 41 H 0.08 1.45 7.74 -51.93 -0.40 1.05 16 42 H 0.11 1.79 4.15 -72.77 -0.30 1.48 16 43 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 44 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 45 H 0.36 8.14 3.81 -40.82 -0.16 7.99 16 46 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -34.85 363.52 -7.98 -42.83 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -7.36 Total: 11.08 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.75 Total: 1.14 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.59 Total: -61.67 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.23 Total: -16.09 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.85 -7.98 -42.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037819694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.995 kcal (2) G-P(sol) polarization free energy of solvation -34.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds