Wall clock time and date at job start Tue Mar 31 2020 12:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47195 * 2 1 4 4 H 1.08995 * 109.49658 * 55.06300 * 3 2 1 5 5 C 1.53197 * 109.49496 * 294.99909 * 3 2 1 6 6 N 1.46923 * 108.77167 * 185.37967 * 5 3 2 7 7 C 1.34781 * 120.63358 * 233.58118 * 6 5 3 8 8 O 1.21593 * 119.99392 * 7.02774 * 7 6 5 9 9 C 1.47520 * 120.00533 * 187.01715 * 7 6 5 10 10 N 1.31933 * 126.45759 * 6.72642 * 9 7 6 11 11 N 1.28455 * 110.21062 * 180.13884 * 10 9 7 12 12 H 0.97004 * 124.92114 * 179.82106 * 11 10 9 13 13 C 1.35836 * 110.16710 * 359.55388 * 11 10 9 14 14 C 1.50698 * 126.46382 * 180.23312 * 13 11 10 15 15 C 1.35788 * 107.07898 * 0.26843 * 13 11 10 16 16 O 1.36082 * 127.26842 * 180.02562 * 15 13 11 17 17 C 1.46930 * 118.74311 * 53.86350 * 6 5 3 18 18 C 1.53628 * 108.54122 * 306.09535 * 17 6 5 19 19 C 1.53037 * 109.24370 * 54.84747 * 18 17 6 20 20 H 1.09000 * 109.44906 * 178.50079 * 19 18 17 21 21 N 1.46505 * 109.45702 * 58.53736 * 19 18 17 22 22 C 1.36934 * 120.00086 * 84.92972 * 21 19 18 23 23 H 1.08007 * 119.99877 * 0.02562 * 22 21 19 24 24 C 1.38813 * 120.00336 * 180.02562 * 22 21 19 25 25 N 1.31611 * 120.00244 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99664 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.46591 * 89.99917 * 26 24 22 28 28 H 1.48498 * 109.47034 * 209.99896 * 26 24 22 29 29 H 1.48497 * 109.47171 * 330.00326 * 26 24 22 30 30 H 1.08994 * 109.47210 * 300.00053 * 1 2 3 31 31 H 1.09003 * 109.47131 * 60.00364 * 1 2 3 32 32 H 1.09002 * 109.47126 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47282 * 239.99649 * 2 1 3 34 34 H 1.08996 * 109.47338 * 119.99989 * 2 1 3 35 35 H 1.08997 * 109.58541 * 65.59656 * 5 3 2 36 36 H 1.08997 * 109.70298 * 305.23333 * 5 3 2 37 37 H 1.08997 * 109.47481 * 90.01935 * 14 13 11 38 38 H 1.08999 * 109.47555 * 210.02879 * 14 13 11 39 39 H 1.09004 * 109.46954 * 330.02085 * 14 13 11 40 40 H 0.96697 * 114.00785 * 89.96697 * 16 15 13 41 41 H 1.09004 * 109.58764 * 65.91882 * 17 6 5 42 42 H 1.08997 * 109.59114 * 186.35144 * 17 6 5 43 43 H 1.09008 * 109.62601 * 294.86553 * 18 17 6 44 44 H 1.08996 * 109.45897 * 174.74087 * 18 17 6 45 45 H 0.96995 * 120.00018 * 264.92956 * 21 19 18 46 46 H 0.97001 * 119.99899 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 0.8423 5 6 1.6350 2.1279 -1.3088 6 7 2.2408 3.4658 -1.3490 7 6 1.4805 4.5579 -1.5636 8 8 0.2692 4.4578 -1.5987 9 6 2.1178 5.8744 -1.7555 10 7 3.4111 6.1108 -1.8655 11 7 3.6207 7.3686 -2.0204 12 1 4.4946 7.7778 -2.1202 13 6 2.4412 8.0422 -2.0300 14 6 2.2604 9.5294 -2.1938 15 6 1.4557 7.1231 -1.8635 16 8 0.1153 7.3523 -1.8117 17 6 3.6922 3.5903 -1.1571 18 6 4.0734 2.8889 0.1555 19 6 3.5655 1.4457 0.1221 20 1 3.8573 0.9368 1.0408 21 7 4.1486 0.7496 -1.0277 22 6 5.3869 0.1744 -0.9239 23 1 5.9336 0.2335 0.0057 24 6 5.9397 -0.4846 -2.0134 25 7 7.1296 -1.0379 -1.9135 26 14 4.9938 -0.5874 -3.6210 27 1 5.3340 0.5819 -4.4710 28 1 5.3598 -1.8390 -4.3314 29 1 3.5360 -0.5866 -3.3385 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.5496 2.2168 -1.3541 36 1 1.9893 1.5408 -2.1561 37 1 2.1566 9.7684 -3.2521 38 1 1.3651 9.8476 -1.6598 39 1 3.1291 10.0478 -1.7877 40 1 -0.3237 7.3157 -2.6726 41 1 4.2128 3.1191 -1.9908 42 1 3.9645 4.6443 -1.1023 43 1 3.6206 3.4145 0.9963 44 1 5.1577 2.8906 0.2665 45 1 3.6575 0.6962 -1.8624 46 1 7.5160 -1.4981 -2.6750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037819694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:06 Heat of formation + Delta-G solvation = -8.015335 kcal Electronic energy + Delta-G solvation = -28708.930411 eV Core-core repulsion = 24828.073908 eV Total energy + Delta-G solvation = -3880.856503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.80775 -41.23870 -39.23961 -38.16354 -35.99123 -35.43549 -33.68466 -33.51810 -32.06956 -31.46608 -30.09663 -27.83816 -27.12815 -25.35568 -24.99307 -24.20575 -22.37398 -22.12658 -20.84854 -19.99712 -19.65292 -19.29029 -18.10146 -17.72511 -17.13808 -17.02286 -16.67090 -16.16677 -15.92170 -15.63098 -15.19369 -15.04689 -14.92373 -14.77336 -14.61776 -14.36621 -14.24419 -13.83310 -13.72632 -13.54056 -13.25585 -13.10920 -12.96339 -12.70731 -12.66033 -12.44779 -12.03839 -11.89815 -11.84690 -11.63420 -11.54366 -11.47490 -11.20608 -11.02240 -10.74725 -10.44343 -9.76362 -9.63069 -9.23107 -7.98546 -5.29022 0.34781 0.85197 1.35993 1.36544 1.43656 1.67974 2.01791 2.18738 2.48652 3.04334 3.33713 3.56029 3.60177 3.67851 3.74800 3.89579 3.95350 4.02208 4.29017 4.31425 4.35283 4.43018 4.43665 4.57930 4.63577 4.77165 4.79021 4.80867 4.93281 4.94786 5.02734 5.03963 5.13080 5.16742 5.22185 5.25569 5.28479 5.38665 5.48286 5.62866 5.83582 6.02649 6.25348 6.32921 6.70960 6.79842 7.05810 7.11890 7.88583 8.07769 9.23442 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.004191 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.844888 B = 6679.321667 C = 7779.696570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.095 4.095 4 H 0.087 0.913 5 C 0.120 3.880 6 N -0.593 5.593 7 C 0.594 3.406 8 O -0.563 6.563 9 C -0.055 4.055 10 N -0.253 5.253 11 N -0.357 5.357 12 H 0.467 0.533 13 C 0.017 3.983 14 C -0.079 4.079 15 C 0.019 3.981 16 O -0.465 6.465 17 C 0.102 3.898 18 C -0.141 4.141 19 C 0.178 3.822 20 H 0.051 0.949 21 N -0.741 5.741 22 C -0.212 4.212 23 H 0.062 0.938 24 C -0.057 4.057 25 N -0.984 5.984 26 Si 0.936 3.064 27 H -0.284 1.284 28 H -0.298 1.298 29 H -0.257 1.257 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.400 0.600 41 H 0.051 0.949 42 H 0.130 0.870 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.361 0.639 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.145 22.128 -0.395 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.115 4.115 4 H 0.105 0.895 5 C -0.003 4.003 6 N -0.324 5.324 7 C 0.382 3.618 8 O -0.441 6.441 9 C -0.214 4.214 10 N -0.091 5.091 11 N -0.076 5.076 12 H 0.317 0.683 13 C -0.111 4.111 14 C -0.137 4.137 15 C -0.037 4.037 16 O -0.272 6.272 17 C -0.021 4.021 18 C -0.181 4.181 19 C 0.070 3.930 20 H 0.069 0.931 21 N -0.384 5.384 22 C -0.343 4.343 23 H 0.080 0.920 24 C -0.248 4.248 25 N -0.635 5.635 26 Si 0.765 3.235 27 H -0.210 1.210 28 H -0.225 1.225 29 H -0.182 1.182 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.257 0.743 41 H 0.069 0.931 42 H 0.147 0.853 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.195 0.805 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.557 21.515 0.288 24.424 hybrid contribution -0.198 -0.368 -1.651 1.703 sum -11.755 21.147 -1.363 24.232 Atomic orbital electron populations 1.21795 0.94455 1.02124 1.02059 1.21397 0.96378 0.94761 1.02155 1.21700 0.95328 0.96908 0.97523 0.89498 1.21674 0.99329 0.81532 0.97735 1.48032 1.09162 1.06043 1.69166 1.17235 0.85677 0.82522 0.76385 1.90734 1.13957 1.85694 1.53686 1.22268 0.90912 0.95418 1.12779 1.73467 1.17033 0.99521 1.19066 1.43424 1.10094 1.03253 1.50878 0.68330 1.22062 0.85186 0.98103 1.05714 1.20509 1.05164 0.83280 1.04739 1.17995 0.85776 0.89434 1.10475 1.84821 1.14360 1.92085 1.35965 1.22406 0.77927 1.04230 0.97530 1.22444 1.01224 0.97502 0.96955 1.20409 0.91142 0.91216 0.90254 0.93105 1.42777 1.18099 1.65836 1.11730 1.19015 0.92775 1.24886 0.97651 0.91991 1.25254 0.97447 1.01251 1.00888 1.69848 1.18392 1.43637 1.31631 0.85685 0.79579 0.76802 0.81389 1.21028 1.22494 1.18168 0.91947 0.92884 0.91888 0.93264 0.91627 0.88750 0.92793 0.88290 0.89204 0.88328 0.74291 0.93093 0.85273 0.91201 0.91756 0.80458 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.67 71.98 0.70 -2.94 16 2 C -0.11 -3.30 5.19 30.59 0.16 -3.14 16 3 C -0.09 -3.01 2.14 -10.72 -0.02 -3.03 16 4 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 5 C 0.12 3.98 5.03 86.36 0.43 4.41 16 6 N -0.59 -19.99 2.97 -821.81 -2.44 -22.43 16 7 C 0.59 20.43 7.68 86.69 0.67 21.10 16 8 O -0.56 -21.55 15.97 -2.36 -0.04 -21.59 16 9 C -0.05 -1.58 6.83 42.45 0.29 -1.29 16 10 N -0.25 -6.25 8.69 -48.09 -0.42 -6.67 16 11 N -0.36 -5.56 6.87 -47.26 -0.32 -5.88 16 12 H 0.47 3.35 8.96 -219.99 -1.97 1.37 16 13 C 0.02 0.26 7.27 41.37 0.30 0.56 16 14 C -0.08 -0.47 10.44 71.24 0.74 0.27 16 15 C 0.02 0.45 7.28 22.57 0.16 0.61 16 16 O -0.46 -10.62 13.21 -92.83 -1.23 -11.85 16 17 C 0.10 3.43 5.88 86.51 0.51 3.94 16 18 C -0.14 -4.80 5.79 30.82 0.18 -4.62 16 19 C 0.18 6.63 2.53 45.02 0.11 6.75 16 20 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 21 N -0.74 -33.37 3.52 -322.81 -1.14 -34.51 16 22 C -0.21 -11.69 10.41 84.03 0.87 -10.81 16 23 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 24 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 25 N -0.98 -62.53 13.97 21.65 0.30 -62.22 16 26 Si 0.94 45.89 27.74 68.60 1.90 47.79 16 27 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 28 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 29 H -0.26 -11.54 6.52 99.48 0.65 -10.89 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.32 6.70 -2.39 -0.02 1.30 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.70 7.70 -2.38 -0.02 1.69 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.09 3.08 5.71 -2.39 -0.01 3.06 16 36 H 0.05 1.92 6.65 -2.39 -0.02 1.91 16 37 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.10 0.15 8.14 -2.38 -0.02 0.13 16 40 H 0.40 5.91 9.07 -74.06 -0.67 5.24 16 41 H 0.05 1.96 7.74 -2.38 -0.02 1.94 16 42 H 0.13 3.98 4.15 -29.34 -0.12 3.85 16 43 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 44 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.36 16.23 3.81 -92.71 -0.35 15.88 16 46 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -77.09 363.52 0.07 -77.02 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: -2.13 Total: 31.41 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 5.57 Total: 8.92 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -4.01 Total: -131.71 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -1.26 Total: -33.43 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.90 Total: 47.79 kcal Total: -77.09 0.07 -77.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037819694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.004 kcal (2) G-P(sol) polarization free energy of solvation -77.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds