Wall clock time and date at job start Tue Mar 31 2020 12:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46929 * 2 1 4 4 H 1.09002 * 109.52781 * 305.08056 * 3 2 1 5 5 C 1.53191 * 109.49747 * 65.16246 * 3 2 1 6 6 N 1.47212 * 108.85250 * 174.59956 * 5 3 2 7 7 C 1.34779 * 120.80920 * 126.33853 * 6 5 3 8 8 O 1.21590 * 119.99586 * 175.33046 * 7 6 5 9 9 C 1.47522 * 120.00287 * 355.32755 * 7 6 5 10 10 N 1.31929 * 126.45942 * 6.18491 * 9 7 6 11 11 N 1.28453 * 110.21276 * 179.97438 * 10 9 7 12 12 H 0.96998 * 124.92119 * 180.02562 * 11 10 9 13 13 C 1.35837 * 110.16674 * 359.97438 * 11 10 9 14 14 C 1.50702 * 126.46162 * 179.97438 * 13 11 10 15 15 C 1.35783 * 107.08011 * 359.75261 * 13 11 10 16 16 O 1.36082 * 127.27219 * 180.27203 * 15 13 11 17 17 C 1.46923 * 118.55547 * 306.48004 * 6 5 3 18 18 C 1.53187 * 108.89419 * 53.54067 * 17 6 5 19 19 C 1.53042 * 109.49487 * 185.00058 * 3 2 1 20 20 H 1.08994 * 109.45956 * 298.70387 * 19 3 2 21 21 N 1.46501 * 109.46222 * 58.66364 * 19 3 2 22 22 C 1.36930 * 120.00287 * 205.06778 * 21 19 3 23 23 H 1.08003 * 120.00010 * 359.97438 * 22 21 19 24 24 C 1.38810 * 120.00102 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00268 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00092 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.47169 * 60.00030 * 26 24 22 28 28 H 1.48501 * 109.47388 * 179.97438 * 26 24 22 29 29 H 1.48507 * 109.47326 * 300.00470 * 26 24 22 30 30 H 1.08997 * 109.47043 * 299.99947 * 1 2 3 31 31 H 1.08994 * 109.47111 * 60.00276 * 1 2 3 32 32 H 1.09004 * 109.46994 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46717 * 239.99690 * 2 1 3 34 34 H 1.09005 * 109.46930 * 120.00195 * 2 1 3 35 35 H 1.08994 * 109.58809 * 294.37148 * 5 3 2 36 36 H 1.08995 * 109.58557 * 54.66023 * 5 3 2 37 37 H 1.09004 * 109.46470 * 89.98309 * 14 13 11 38 38 H 1.09001 * 109.47329 * 209.97768 * 14 13 11 39 39 H 1.08996 * 109.47506 * 329.98271 * 14 13 11 40 40 H 0.96700 * 113.99884 * 270.13123 * 16 15 13 41 41 H 1.09001 * 109.58692 * 293.67876 * 17 6 5 42 42 H 1.09005 * 109.58589 * 173.39936 * 17 6 5 43 43 H 1.08997 * 109.50076 * 65.24517 * 18 17 6 44 44 H 1.09003 * 109.49915 * 185.30788 * 18 17 6 45 45 H 0.97006 * 119.99678 * 25.06748 * 21 19 3 46 46 H 0.96993 * 120.00193 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9828 -0.8407 5 6 1.6385 2.1267 1.3105 6 7 2.2451 3.4674 1.3524 7 6 1.4880 4.5612 1.5689 8 8 2.0139 5.6512 1.6853 9 6 0.0212 4.4359 1.6647 10 7 -0.6709 3.3127 1.6723 11 7 -1.9266 3.5658 1.7675 12 1 -2.6278 2.8960 1.7922 13 6 -2.1306 4.9074 1.8299 14 6 -3.4605 5.6067 1.9457 15 6 -0.9099 5.4994 1.7731 16 8 -0.6379 6.8322 1.8096 17 6 3.6952 3.5887 1.1498 18 6 4.0736 2.8881 -0.1589 19 6 3.5652 1.4450 -0.1258 20 1 4.0008 0.9260 0.7280 21 7 3.9542 0.7620 -1.3621 22 6 5.1917 0.1851 -1.4654 23 1 5.8812 0.2339 -0.6356 24 6 5.5600 -0.4625 -2.6366 25 7 4.7199 -0.5216 -3.6481 26 14 7.2485 -1.2489 -2.7778 27 1 7.3989 -2.2902 -1.7297 28 1 7.3941 -1.8718 -4.1180 29 1 8.2949 -0.2106 -2.5976 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.5533 2.2160 1.3585 36 1 1.9943 1.5364 2.1548 37 1 -3.7113 5.7380 2.9984 38 1 -3.4017 6.5816 1.4619 39 1 -4.2302 5.0063 1.4609 40 1 -0.6197 7.2539 0.9396 41 1 4.2209 3.1189 1.9811 42 1 3.9693 4.6422 1.0928 43 1 3.6192 3.4147 -0.9981 44 1 5.1577 2.8899 -0.2723 45 1 3.3350 0.7185 -2.1075 46 1 4.9774 -0.9738 -4.4667 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037819695.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:10 Heat of formation + Delta-G solvation = 13.854322 kcal Electronic energy + Delta-G solvation = -28425.987262 eV Core-core repulsion = 24546.079098 eV Total energy + Delta-G solvation = -3879.908163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.96817 -39.75840 -37.80168 -37.23405 -34.51574 -33.69306 -33.07962 -31.82134 -31.12468 -29.50321 -28.49475 -27.23187 -25.39634 -24.25517 -23.52317 -22.14644 -21.57428 -20.63395 -19.82630 -18.96304 -18.48566 -17.35433 -17.11669 -16.59757 -16.12663 -15.72991 -14.91406 -14.78306 -14.42532 -14.15826 -14.03439 -13.89960 -13.69257 -13.40356 -13.32693 -13.02937 -12.96051 -12.92287 -12.78216 -12.20761 -11.98028 -11.45901 -11.32776 -11.23274 -10.86438 -10.80863 -10.63471 -10.41994 -10.28087 -10.19277 -10.12107 -9.87977 -9.66361 -9.58116 -9.31124 -8.98085 -8.84759 -8.33386 -6.91907 -5.74394 -3.02398 1.33499 1.65771 2.42014 3.12212 3.40096 3.45207 3.50043 3.50517 3.97020 4.30028 4.42521 4.60906 4.64921 5.02225 5.07221 5.22253 5.28495 5.37476 5.42502 5.44508 5.52083 5.62693 5.63440 5.66309 5.74877 5.78982 5.89068 6.00279 6.12595 6.22406 6.26719 6.36122 6.43716 6.45788 6.54073 6.59404 6.70927 6.80658 6.92403 7.03955 7.14257 7.48087 7.51907 7.69382 7.72007 8.32201 8.44226 9.55494 10.13587 10.48758 11.48180 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021492 B = 0.003239 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.500274 B = 8642.266832 C = 9461.589329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.101 4.101 4 H 0.066 0.934 5 C 0.080 3.920 6 N -0.591 5.591 7 C 0.596 3.404 8 O -0.533 6.533 9 C -0.016 4.016 10 N -0.239 5.239 11 N -0.378 5.378 12 H 0.448 0.552 13 C -0.009 4.009 14 C -0.079 4.079 15 C 0.045 3.955 16 O -0.451 6.451 17 C 0.112 3.888 18 C -0.149 4.149 19 C 0.182 3.818 20 H 0.047 0.953 21 N -0.720 5.720 22 C -0.236 4.236 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.934 5.934 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.136 0.864 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.386 0.614 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.383 0.617 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.858 9.159 11.554 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.121 4.121 4 H 0.085 0.915 5 C -0.043 4.043 6 N -0.323 5.323 7 C 0.381 3.619 8 O -0.408 6.408 9 C -0.178 4.178 10 N -0.076 5.076 11 N -0.094 5.094 12 H 0.294 0.706 13 C -0.135 4.135 14 C -0.137 4.137 15 C -0.011 4.011 16 O -0.257 6.257 17 C -0.010 4.010 18 C -0.190 4.190 19 C 0.071 3.929 20 H 0.065 0.935 21 N -0.361 5.361 22 C -0.367 4.367 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.582 5.582 26 Si 0.736 3.264 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.152 0.848 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.241 0.759 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.217 0.783 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.188 8.501 12.186 23.485 hybrid contribution 0.413 -0.057 -0.959 1.046 sum -17.774 8.444 11.227 22.655 Atomic orbital electron populations 1.21828 0.97031 1.00756 1.01166 1.21433 0.94249 0.95860 1.03384 1.21726 0.97508 0.96063 0.96770 0.91516 1.22903 1.02405 0.81387 0.97653 1.48071 1.08420 1.06807 1.69014 1.16891 0.83433 0.84203 0.77324 1.90794 1.72481 1.26337 1.51166 1.22492 0.95412 0.90125 1.09739 1.73348 0.90295 1.24409 1.19505 1.43320 1.06433 1.06326 1.53343 0.70621 1.21559 0.97763 0.85035 1.09132 1.20293 0.89753 1.00242 1.03446 1.17748 0.89083 0.85140 1.09109 1.84910 1.92165 1.15176 1.33416 1.21749 0.78653 1.02138 0.98486 1.22663 1.02115 0.98970 0.95291 1.20231 0.90974 0.90608 0.91055 0.93483 1.42404 1.16444 1.64474 1.12736 1.19187 0.91866 1.27077 0.98574 0.91304 1.24709 0.98095 1.01666 0.96444 1.69645 1.35292 1.48560 1.04721 0.86308 0.84271 0.79179 0.76658 1.21354 1.21801 1.21338 0.93001 0.93281 0.93397 0.89914 0.92509 0.84758 0.91966 0.90164 0.89546 0.90941 0.75943 0.91698 0.89676 0.92337 0.90600 0.78281 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 37.16 0.36 -1.57 16 2 C -0.11 -1.77 5.31 -26.73 -0.14 -1.92 16 3 C -0.10 -1.67 1.93 -90.50 -0.17 -1.85 16 4 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 5 C 0.08 1.18 5.23 -3.55 -0.02 1.16 16 6 N -0.59 -9.50 2.98 -173.78 -0.52 -10.02 16 7 C 0.60 10.02 7.70 -12.47 -0.10 9.92 16 8 O -0.53 -10.26 15.98 3.49 0.06 -10.20 16 9 C -0.02 -0.23 6.91 -82.70 -0.57 -0.80 16 10 N -0.24 -2.79 8.56 33.45 0.29 -2.51 16 11 N -0.38 -3.03 6.87 33.71 0.23 -2.79 16 12 H 0.45 1.82 8.96 -190.45 -1.71 0.12 16 13 C -0.01 -0.07 7.27 -81.70 -0.59 -0.67 16 14 C -0.08 -0.36 10.44 36.01 0.38 0.02 16 15 C 0.04 0.54 7.28 -39.12 -0.28 0.26 16 16 O -0.45 -5.31 13.21 -21.80 -0.29 -5.60 16 17 C 0.11 1.83 6.41 -3.72 -0.02 1.81 16 18 C -0.15 -2.77 5.66 -26.61 -0.15 -2.92 16 19 C 0.18 3.57 2.19 -67.89 -0.15 3.42 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -17.56 4.33 -53.38 -0.23 -17.79 16 22 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 23 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 26 Si 0.90 22.34 29.55 -169.99 -5.02 17.32 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 H 0.05 0.58 6.70 -51.93 -0.35 0.23 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.59 7.22 -51.93 -0.37 1.22 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.14 1.82 2.45 -115.56 -0.28 1.53 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.39 2.94 9.07 45.56 0.41 3.35 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.08 1.42 7.03 -51.93 -0.37 1.05 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.38 10.03 7.51 -40.82 -0.31 9.72 16 46 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -34.67 370.00 -8.49 -43.16 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -7.59 Total: 10.19 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -1.71 Total: -0.16 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.49 Total: -60.29 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.23 Total: -15.80 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.67 -8.49 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037819695.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.016 kcal (2) G-P(sol) polarization free energy of solvation -34.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds