Wall clock time and date at job start Tue Mar 31 2020 12:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46929 * 2 1 4 4 H 1.09002 * 109.52781 * 305.08056 * 3 2 1 5 5 C 1.53191 * 109.49747 * 65.16246 * 3 2 1 6 6 N 1.47212 * 108.85250 * 174.59956 * 5 3 2 7 7 C 1.34779 * 120.80920 * 126.33853 * 6 5 3 8 8 O 1.21590 * 119.99586 * 175.33046 * 7 6 5 9 9 C 1.47522 * 120.00287 * 355.32755 * 7 6 5 10 10 N 1.31929 * 126.45942 * 6.18491 * 9 7 6 11 11 N 1.28453 * 110.21276 * 179.97438 * 10 9 7 12 12 H 0.96998 * 124.92119 * 180.02562 * 11 10 9 13 13 C 1.35837 * 110.16674 * 359.97438 * 11 10 9 14 14 C 1.50702 * 126.46162 * 179.97438 * 13 11 10 15 15 C 1.35783 * 107.08011 * 359.75261 * 13 11 10 16 16 O 1.36082 * 127.27219 * 180.27203 * 15 13 11 17 17 C 1.46923 * 118.55547 * 306.48004 * 6 5 3 18 18 C 1.53187 * 108.89419 * 53.54067 * 17 6 5 19 19 C 1.53042 * 109.49487 * 185.00058 * 3 2 1 20 20 H 1.08994 * 109.45956 * 298.70387 * 19 3 2 21 21 N 1.46501 * 109.46222 * 58.66364 * 19 3 2 22 22 C 1.36930 * 120.00287 * 205.06778 * 21 19 3 23 23 H 1.08003 * 120.00010 * 359.97438 * 22 21 19 24 24 C 1.38810 * 120.00102 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00268 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00092 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.47169 * 60.00030 * 26 24 22 28 28 H 1.48501 * 109.47388 * 179.97438 * 26 24 22 29 29 H 1.48507 * 109.47326 * 300.00470 * 26 24 22 30 30 H 1.08997 * 109.47043 * 299.99947 * 1 2 3 31 31 H 1.08994 * 109.47111 * 60.00276 * 1 2 3 32 32 H 1.09004 * 109.46994 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46717 * 239.99690 * 2 1 3 34 34 H 1.09005 * 109.46930 * 120.00195 * 2 1 3 35 35 H 1.08994 * 109.58809 * 294.37148 * 5 3 2 36 36 H 1.08995 * 109.58557 * 54.66023 * 5 3 2 37 37 H 1.09004 * 109.46470 * 89.98309 * 14 13 11 38 38 H 1.09001 * 109.47329 * 209.97768 * 14 13 11 39 39 H 1.08996 * 109.47506 * 329.98271 * 14 13 11 40 40 H 0.96700 * 113.99884 * 270.13123 * 16 15 13 41 41 H 1.09001 * 109.58692 * 293.67876 * 17 6 5 42 42 H 1.09005 * 109.58589 * 173.39936 * 17 6 5 43 43 H 1.08997 * 109.50076 * 65.24517 * 18 17 6 44 44 H 1.09003 * 109.49915 * 185.30788 * 18 17 6 45 45 H 0.97006 * 119.99678 * 25.06748 * 21 19 3 46 46 H 0.96993 * 120.00193 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9828 -0.8407 5 6 1.6385 2.1267 1.3105 6 7 2.2451 3.4674 1.3524 7 6 1.4880 4.5612 1.5689 8 8 2.0139 5.6512 1.6853 9 6 0.0212 4.4359 1.6647 10 7 -0.6709 3.3127 1.6723 11 7 -1.9266 3.5658 1.7675 12 1 -2.6278 2.8960 1.7922 13 6 -2.1306 4.9074 1.8299 14 6 -3.4605 5.6067 1.9457 15 6 -0.9099 5.4994 1.7731 16 8 -0.6379 6.8322 1.8096 17 6 3.6952 3.5887 1.1498 18 6 4.0736 2.8881 -0.1589 19 6 3.5652 1.4450 -0.1258 20 1 4.0008 0.9260 0.7280 21 7 3.9542 0.7620 -1.3621 22 6 5.1917 0.1851 -1.4654 23 1 5.8812 0.2339 -0.6356 24 6 5.5600 -0.4625 -2.6366 25 7 4.7199 -0.5216 -3.6481 26 14 7.2485 -1.2489 -2.7778 27 1 7.3989 -2.2902 -1.7297 28 1 7.3941 -1.8718 -4.1180 29 1 8.2949 -0.2106 -2.5976 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.5533 2.2160 1.3585 36 1 1.9943 1.5364 2.1548 37 1 -3.7113 5.7380 2.9984 38 1 -3.4017 6.5816 1.4619 39 1 -4.2302 5.0063 1.4609 40 1 -0.6197 7.2539 0.9396 41 1 4.2209 3.1189 1.9811 42 1 3.9693 4.6422 1.0928 43 1 3.6192 3.4147 -0.9981 44 1 5.1577 2.8899 -0.2723 45 1 3.3350 0.7185 -2.1075 46 1 4.9774 -0.9738 -4.4667 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037819695.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:09 Heat of formation + Delta-G solvation = -12.306364 kcal Electronic energy + Delta-G solvation = -28427.121674 eV Core-core repulsion = 24546.079098 eV Total energy + Delta-G solvation = -3881.042575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.79300 -41.08039 -39.15629 -38.14625 -36.16468 -35.10309 -34.12933 -33.24511 -32.11956 -31.07186 -29.88483 -27.85093 -26.91800 -25.61269 -25.03413 -23.59881 -22.36826 -21.98071 -21.22315 -20.21709 -19.44390 -19.01669 -18.14371 -17.79934 -17.06070 -16.97396 -16.70407 -16.05349 -15.64182 -15.53088 -15.32085 -15.19237 -14.73596 -14.70813 -14.52862 -14.35937 -14.11656 -13.77463 -13.61914 -13.30565 -13.22549 -13.09497 -12.83827 -12.70723 -12.50468 -12.31621 -12.20424 -12.00253 -11.81925 -11.55592 -11.49180 -11.47912 -11.23505 -10.85839 -10.60951 -10.43649 -9.76429 -9.64181 -8.96242 -7.91175 -5.18563 0.36298 0.87647 1.47552 1.49796 1.55564 1.68454 2.01050 2.22711 2.57732 3.03568 3.41391 3.57791 3.69652 3.79839 3.81814 3.91391 4.05474 4.12483 4.27924 4.33809 4.41842 4.47946 4.51617 4.67402 4.74610 4.76117 4.81519 4.84419 4.91986 4.95476 4.99456 5.07954 5.14379 5.16242 5.27292 5.31867 5.40223 5.51225 5.53030 5.58799 5.68824 6.04859 6.30105 6.34292 6.75032 6.81143 7.07982 7.36898 8.12532 8.36980 9.32072 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021492 B = 0.003239 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.500274 B = 8642.266832 C = 9461.589329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 C -0.088 4.088 4 H 0.051 0.949 5 C 0.087 3.913 6 N -0.595 5.595 7 C 0.591 3.409 8 O -0.567 6.567 9 C -0.052 4.052 10 N -0.246 5.246 11 N -0.354 5.354 12 H 0.468 0.532 13 C 0.019 3.981 14 C -0.079 4.079 15 C 0.017 3.983 16 O -0.467 6.467 17 C 0.120 3.880 18 C -0.138 4.138 19 C 0.178 3.822 20 H 0.046 0.954 21 N -0.729 5.729 22 C -0.233 4.233 23 H 0.074 0.926 24 C -0.074 4.074 25 N -0.969 5.969 26 Si 0.967 3.033 27 H -0.278 1.278 28 H -0.298 1.298 29 H -0.281 1.281 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.155 0.845 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.399 0.601 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.040 0.960 44 H 0.063 0.937 45 H 0.371 0.629 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.208 9.023 13.312 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 C -0.109 4.109 4 H 0.069 0.931 5 C -0.036 4.036 6 N -0.326 5.326 7 C 0.379 3.621 8 O -0.445 6.445 9 C -0.211 4.211 10 N -0.084 5.084 11 N -0.073 5.073 12 H 0.318 0.682 13 C -0.109 4.109 14 C -0.137 4.137 15 C -0.039 4.039 16 O -0.274 6.274 17 C -0.003 4.003 18 C -0.179 4.179 19 C 0.069 3.931 20 H 0.064 0.936 21 N -0.368 5.368 22 C -0.365 4.365 23 H 0.092 0.908 24 C -0.267 4.267 25 N -0.620 5.620 26 Si 0.797 3.203 27 H -0.204 1.204 28 H -0.224 1.224 29 H -0.208 1.208 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.171 0.829 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.256 0.744 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.059 0.941 44 H 0.081 0.919 45 H 0.203 0.797 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -20.555 8.359 13.985 26.229 hybrid contribution 1.030 0.040 -1.460 1.787 sum -19.525 8.398 12.525 24.670 Atomic orbital electron populations 1.21753 0.94155 1.01914 1.02061 1.21344 0.96778 0.94672 1.01710 1.21585 0.94939 0.96814 0.97515 0.93065 1.22971 1.03615 0.80563 0.96458 1.48133 1.08141 1.07351 1.68948 1.17307 0.84780 0.83605 0.76404 1.90756 1.73530 1.27454 1.52758 1.22210 0.94224 0.91871 1.12809 1.73053 0.91693 1.23721 1.19887 1.43408 1.05753 1.07061 1.51072 0.68179 1.22005 0.98181 0.84684 1.06028 1.20500 0.87984 1.00549 1.04642 1.18046 0.90028 0.85011 1.10794 1.84857 1.92352 1.15350 1.34848 1.21604 0.79565 1.01650 0.97517 1.22458 1.01035 0.98254 0.96118 1.20439 0.93302 0.90420 0.88934 0.93617 1.42547 1.15500 1.64829 1.13875 1.19551 0.92718 1.25854 0.98409 0.90798 1.25464 1.01575 1.03160 0.96458 1.69804 1.37061 1.50075 1.05100 0.85299 0.80323 0.78385 0.76282 1.20417 1.22422 1.20764 0.90814 0.93571 0.92173 0.93756 0.91943 0.82934 0.90843 0.88983 0.89008 0.88042 0.74437 0.90063 0.90110 0.94103 0.91869 0.79672 0.94214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.67 71.98 0.70 -2.64 16 2 C -0.11 -3.36 5.31 30.59 0.16 -3.20 16 3 C -0.09 -2.94 1.93 -10.72 -0.02 -2.96 16 4 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 5 C 0.09 2.45 5.23 86.31 0.45 2.90 16 6 N -0.59 -18.94 2.98 -821.96 -2.45 -21.39 16 7 C 0.59 19.90 7.70 86.69 0.67 20.57 16 8 O -0.57 -22.28 15.98 -2.28 -0.04 -22.32 16 9 C -0.05 -1.41 6.91 42.45 0.29 -1.12 16 10 N -0.25 -5.15 8.56 -48.09 -0.41 -5.56 16 11 N -0.35 -4.41 6.87 -47.26 -0.32 -4.74 16 12 H 0.47 1.72 8.96 -220.00 -1.97 -0.25 16 13 C 0.02 0.25 7.27 41.37 0.30 0.56 16 14 C -0.08 -0.38 10.44 71.24 0.74 0.36 16 15 C 0.02 0.38 7.28 22.57 0.16 0.55 16 16 O -0.47 -10.67 13.21 -92.76 -1.23 -11.90 16 17 C 0.12 3.92 6.41 86.36 0.55 4.48 16 18 C -0.14 -5.24 5.66 30.67 0.17 -5.06 16 19 C 0.18 7.09 2.19 45.02 0.10 7.19 16 20 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 21 N -0.73 -36.56 4.33 -322.81 -1.40 -37.95 16 22 C -0.23 -12.89 9.93 84.03 0.83 -12.05 16 23 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 24 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 25 N -0.97 -59.48 13.06 21.65 0.28 -59.19 16 26 Si 0.97 46.51 29.55 68.60 2.03 48.53 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 29 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 30 H 0.07 1.41 6.70 -2.39 -0.02 1.40 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.28 8.14 -2.38 -0.02 1.27 16 33 H 0.04 1.74 7.22 -2.39 -0.02 1.73 16 34 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.15 3.81 2.45 -84.70 -0.21 3.61 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.40 5.97 9.07 -74.06 -0.67 5.30 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.08 2.75 7.03 -2.38 -0.02 2.73 16 43 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.37 20.25 7.51 -92.70 -0.70 19.56 16 46 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -77.48 370.00 -0.46 -77.94 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -2.50 Total: 30.83 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 5.59 Total: 5.75 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -4.30 Total: -128.83 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -1.26 Total: -34.22 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Total: -77.48 -0.46 -77.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037819695.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.635 kcal (2) G-P(sol) polarization free energy of solvation -77.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds