Wall clock time and date at job start Tue Mar 31 2020 12:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46933 * 2 1 4 4 H 1.08995 * 109.52391 * 305.08310 * 3 2 1 5 5 C 1.53193 * 109.49469 * 65.16671 * 3 2 1 6 6 N 1.46930 * 108.77438 * 174.58733 * 5 3 2 7 7 C 1.34772 * 120.62813 * 126.36514 * 6 5 3 8 8 O 1.21589 * 120.00772 * 353.02168 * 7 6 5 9 9 C 1.47524 * 119.99590 * 173.01799 * 7 6 5 10 10 N 1.31934 * 126.46258 * 353.96101 * 9 7 6 11 11 N 1.28455 * 110.21139 * 179.97438 * 10 9 7 12 12 H 0.97003 * 124.91840 * 179.97438 * 11 10 9 13 13 C 1.35835 * 110.17084 * 359.97438 * 11 10 9 14 14 C 1.50700 * 126.46228 * 179.97438 * 13 11 10 15 15 C 1.35782 * 107.07635 * 359.75111 * 13 11 10 16 16 O 1.36089 * 127.26679 * 180.26938 * 15 13 11 17 17 C 1.46921 * 118.73755 * 306.38792 * 6 5 3 18 18 C 1.53163 * 108.77059 * 53.60798 * 17 6 5 19 19 C 1.53038 * 109.49808 * 184.99899 * 3 2 1 20 20 H 1.09009 * 109.46041 * 58.67495 * 19 3 2 21 21 N 1.46502 * 109.46307 * 298.70904 * 19 3 2 22 22 C 1.36936 * 120.00044 * 154.97228 * 21 19 3 23 23 H 1.07998 * 120.00308 * 359.97438 * 22 21 19 24 24 C 1.38814 * 119.99690 * 179.97438 * 22 21 19 25 25 N 1.31624 * 119.99869 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00020 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46878 * 270.00057 * 26 24 22 28 28 H 1.48495 * 109.46884 * 29.99941 * 26 24 22 29 29 H 1.48491 * 109.47023 * 150.00221 * 26 24 22 30 30 H 1.08996 * 109.47047 * 299.99594 * 1 2 3 31 31 H 1.08997 * 109.47134 * 60.00381 * 1 2 3 32 32 H 1.09004 * 109.46585 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47420 * 240.00375 * 2 1 3 34 34 H 1.08999 * 109.47399 * 120.00350 * 2 1 3 35 35 H 1.09004 * 109.58140 * 294.36944 * 5 3 2 36 36 H 1.08997 * 109.58956 * 54.65124 * 5 3 2 37 37 H 1.08997 * 109.46873 * 89.97958 * 14 13 11 38 38 H 1.09001 * 109.46919 * 209.97779 * 14 13 11 39 39 H 1.09000 * 109.46923 * 329.97916 * 14 13 11 40 40 H 0.96697 * 114.00271 * 270.12645 * 16 15 13 41 41 H 1.08995 * 109.58648 * 173.39603 * 17 6 5 42 42 H 1.09003 * 109.58573 * 293.68265 * 17 6 5 43 43 H 1.08994 * 109.48504 * 185.40649 * 18 17 6 44 44 H 1.09002 * 109.49846 * 65.31593 * 18 17 6 45 45 H 0.97003 * 119.99412 * 334.97340 * 21 19 3 46 46 H 0.97002 * 119.99575 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6047 1.9828 -0.8406 5 6 1.6385 2.1267 1.3106 6 7 2.2450 3.4644 1.3508 7 6 1.4855 4.5564 1.5674 8 8 0.2743 4.4569 1.6053 9 6 2.1238 5.8726 1.7586 10 7 3.4181 6.1100 1.8533 11 7 3.6281 7.3670 2.0149 12 1 4.5025 7.7762 2.1092 13 6 2.4485 8.0402 2.0348 14 6 2.2684 9.5267 2.2044 15 6 1.4624 7.1217 1.8680 16 8 0.1219 7.3515 1.8192 17 6 3.6951 3.5889 1.1499 18 6 4.0733 2.8883 -0.1586 19 6 3.5652 1.4452 -0.1257 20 1 3.8546 0.9372 -1.0457 21 7 4.1507 0.7476 1.0218 22 6 5.3883 0.1714 0.9142 23 1 5.9326 0.2309 -0.0167 24 6 5.9433 -0.4891 2.0016 25 7 5.2797 -0.5620 3.1360 26 14 7.6313 -1.2756 1.8547 27 1 7.4847 -2.6793 1.3928 28 1 8.4482 -0.5150 0.8753 29 1 8.3026 -1.2579 3.1791 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.5532 2.2160 1.3586 36 1 1.9943 1.5363 2.1549 37 1 2.2782 10.0078 1.2263 38 1 1.3160 9.7235 2.6965 39 1 3.0808 9.9240 2.8128 40 1 -0.3151 7.3145 2.6809 41 1 3.9668 4.6428 1.0920 42 1 4.2208 3.1212 1.9824 43 1 5.1574 2.8898 -0.2716 44 1 3.6188 3.4150 -0.9978 45 1 3.6617 0.6938 1.8578 46 1 5.6674 -1.0239 3.8958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037819697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:13 Heat of formation + Delta-G solvation = 14.134327 kcal Electronic energy + Delta-G solvation = -28585.298360 eV Core-core repulsion = 24705.402339 eV Total energy + Delta-G solvation = -3879.896021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.83323 -39.71272 -37.71116 -37.15231 -34.37380 -33.68311 -32.77641 -31.60832 -31.10153 -29.31723 -28.46547 -27.08374 -25.57762 -23.76338 -23.46266 -22.89232 -21.44801 -20.67286 -19.48048 -18.52596 -18.04757 -17.27640 -17.16780 -16.38803 -16.04461 -15.63160 -14.88575 -14.52536 -14.42339 -14.17750 -13.94411 -13.87089 -13.58246 -13.31906 -13.17880 -13.08543 -12.90715 -12.77979 -12.46857 -12.32968 -11.93751 -11.40222 -11.31237 -10.99160 -10.87898 -10.72793 -10.61188 -10.36917 -10.20601 -10.13229 -10.03937 -9.70152 -9.59912 -9.47489 -9.37683 -8.89355 -8.80092 -8.07373 -6.90946 -5.74307 -3.01898 1.47883 1.76741 2.56354 3.31531 3.43911 3.49582 3.50778 3.53033 4.13287 4.40193 4.53252 4.61361 4.78248 5.12700 5.15118 5.29899 5.38135 5.45200 5.46419 5.53335 5.63603 5.70257 5.76962 5.79045 5.91291 5.94205 5.97523 6.07877 6.20753 6.26698 6.38587 6.46882 6.48786 6.55039 6.64796 6.72359 6.79687 6.86968 6.91921 7.04796 7.15741 7.57654 7.66295 7.72968 7.87388 8.44404 8.48500 9.55899 10.13890 10.49300 11.48255 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013867 B = 0.003927 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.747397 B = 7127.845245 C = 8583.580129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.119 3.881 6 N -0.586 5.586 7 C 0.595 3.405 8 O -0.540 6.540 9 C -0.018 4.018 10 N -0.234 5.234 11 N -0.380 5.380 12 H 0.448 0.552 13 C -0.013 4.013 14 C -0.078 4.078 15 C 0.044 3.956 16 O -0.452 6.452 17 C 0.095 3.905 18 C -0.148 4.148 19 C 0.178 3.822 20 H 0.049 0.951 21 N -0.718 5.718 22 C -0.234 4.234 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.903 3.097 27 H -0.291 1.291 28 H -0.283 1.283 29 H -0.293 1.293 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.385 0.615 41 H 0.110 0.890 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.384 0.616 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.444 18.114 -2.217 19.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.003 4.003 6 N -0.317 5.317 7 C 0.381 3.619 8 O -0.416 6.416 9 C -0.180 4.180 10 N -0.070 5.070 11 N -0.096 5.096 12 H 0.294 0.706 13 C -0.139 4.139 14 C -0.136 4.136 15 C -0.012 4.012 16 O -0.258 6.258 17 C -0.028 4.028 18 C -0.189 4.189 19 C 0.067 3.933 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.365 4.365 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.581 5.581 26 Si 0.735 3.265 27 H -0.219 1.219 28 H -0.209 1.209 29 H -0.220 1.220 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.240 0.760 41 H 0.127 0.873 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.219 0.781 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.879 17.490 -2.853 18.671 hybrid contribution 0.705 0.001 0.786 1.056 sum -5.173 17.491 -2.067 18.357 Atomic orbital electron populations 1.21853 0.96825 1.00950 1.01414 1.21416 0.94264 0.95758 1.03318 1.21744 0.97410 0.96069 0.97052 0.91549 1.21724 0.98762 0.81382 0.98399 1.47967 1.09304 1.05948 1.68503 1.16870 0.85884 0.81715 0.77440 1.90762 1.12948 1.85082 1.52799 1.22507 0.89731 0.95808 1.09919 1.73720 1.17733 0.97415 1.18143 1.43326 1.08788 1.04463 1.53016 0.70633 1.21544 0.86602 0.96688 1.09072 1.20273 1.03614 0.86638 1.03084 1.17763 0.85002 0.89488 1.08967 1.84890 1.14298 1.92218 1.34350 1.22376 0.78276 1.03085 0.99030 1.22507 1.01523 0.99012 0.95900 1.20240 0.89741 0.90799 0.92470 0.93294 1.42465 1.19055 1.63892 1.10616 1.19224 0.93651 1.26679 0.96981 0.91321 1.24685 0.98491 1.01626 0.96032 1.69656 1.38095 1.48146 1.02222 0.86248 0.84365 0.79354 0.76559 1.21894 1.20912 1.21969 0.92754 0.93360 0.93223 0.92072 0.90508 0.89559 0.90621 0.90250 0.89634 0.91030 0.75991 0.87277 0.90149 0.90963 0.93667 0.78112 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.67 37.16 0.36 -1.83 16 2 C -0.11 -1.83 5.19 -26.73 -0.14 -1.97 16 3 C -0.10 -1.79 2.14 -90.50 -0.19 -1.98 16 4 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 5 C 0.12 2.16 5.04 -3.71 -0.02 2.14 16 6 N -0.59 -10.63 2.97 -174.02 -0.52 -11.15 16 7 C 0.60 10.94 7.68 -12.48 -0.10 10.84 16 8 O -0.54 -10.92 15.97 3.56 0.06 -10.87 16 9 C -0.02 -0.29 6.84 -82.69 -0.57 -0.85 16 10 N -0.23 -3.24 8.68 33.45 0.29 -2.95 16 11 N -0.38 -3.69 6.87 33.71 0.23 -3.46 16 12 H 0.45 2.57 8.96 -190.45 -1.71 0.87 16 13 C -0.01 -0.13 7.27 -81.70 -0.59 -0.72 16 14 C -0.08 -0.43 10.44 36.01 0.38 -0.05 16 15 C 0.04 0.58 7.28 -39.12 -0.28 0.30 16 16 O -0.45 -5.74 13.21 -21.74 -0.29 -6.03 16 17 C 0.10 1.71 5.85 -3.73 -0.02 1.69 16 18 C -0.15 -2.68 5.78 -26.63 -0.15 -2.83 16 19 C 0.18 3.48 2.53 -67.89 -0.17 3.31 16 20 H 0.05 0.99 8.08 -51.92 -0.42 0.57 16 21 N -0.72 -16.96 3.73 -53.38 -0.20 -17.16 16 22 C -0.23 -6.22 9.93 -15.06 -0.15 -6.37 16 23 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.41 13.06 55.49 0.72 -26.68 16 26 Si 0.90 22.03 29.55 -169.99 -5.02 17.01 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 H 0.05 0.78 6.70 -51.93 -0.35 0.43 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.47 7.70 -51.93 -0.40 1.07 16 35 H 0.09 1.55 5.72 -51.93 -0.30 1.25 16 36 H 0.08 1.49 6.64 -51.93 -0.35 1.15 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.39 3.28 9.07 45.56 0.41 3.69 16 41 H 0.11 1.82 4.15 -73.70 -0.31 1.51 16 42 H 0.08 1.67 7.74 -51.93 -0.40 1.27 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.38 9.72 5.95 -40.82 -0.24 9.48 16 46 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 366.62 15.07 5.52 5.52 Total: -1.00 -33.70 366.62 -8.35 -42.05 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -7.40 Total: 12.49 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.75 Total: 1.23 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: 0.53 Total: -61.40 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.23 Total: -16.89 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.70 -8.35 -42.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037819697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.182 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds