Wall clock time and date at job start Tue Mar 31 2020 12:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46933 * 2 1 4 4 H 1.08995 * 109.52391 * 305.08310 * 3 2 1 5 5 C 1.53193 * 109.49469 * 65.16671 * 3 2 1 6 6 N 1.46930 * 108.77438 * 174.58733 * 5 3 2 7 7 C 1.34772 * 120.62813 * 126.36514 * 6 5 3 8 8 O 1.21589 * 120.00772 * 353.02168 * 7 6 5 9 9 C 1.47524 * 119.99590 * 173.01799 * 7 6 5 10 10 N 1.31934 * 126.46258 * 353.96101 * 9 7 6 11 11 N 1.28455 * 110.21139 * 179.97438 * 10 9 7 12 12 H 0.97003 * 124.91840 * 179.97438 * 11 10 9 13 13 C 1.35835 * 110.17084 * 359.97438 * 11 10 9 14 14 C 1.50700 * 126.46228 * 179.97438 * 13 11 10 15 15 C 1.35782 * 107.07635 * 359.75111 * 13 11 10 16 16 O 1.36089 * 127.26679 * 180.26938 * 15 13 11 17 17 C 1.46921 * 118.73755 * 306.38792 * 6 5 3 18 18 C 1.53163 * 108.77059 * 53.60798 * 17 6 5 19 19 C 1.53038 * 109.49808 * 184.99899 * 3 2 1 20 20 H 1.09009 * 109.46041 * 58.67495 * 19 3 2 21 21 N 1.46502 * 109.46307 * 298.70904 * 19 3 2 22 22 C 1.36936 * 120.00044 * 154.97228 * 21 19 3 23 23 H 1.07998 * 120.00308 * 359.97438 * 22 21 19 24 24 C 1.38814 * 119.99690 * 179.97438 * 22 21 19 25 25 N 1.31624 * 119.99869 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00020 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46878 * 270.00057 * 26 24 22 28 28 H 1.48495 * 109.46884 * 29.99941 * 26 24 22 29 29 H 1.48491 * 109.47023 * 150.00221 * 26 24 22 30 30 H 1.08996 * 109.47047 * 299.99594 * 1 2 3 31 31 H 1.08997 * 109.47134 * 60.00381 * 1 2 3 32 32 H 1.09004 * 109.46585 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47420 * 240.00375 * 2 1 3 34 34 H 1.08999 * 109.47399 * 120.00350 * 2 1 3 35 35 H 1.09004 * 109.58140 * 294.36944 * 5 3 2 36 36 H 1.08997 * 109.58956 * 54.65124 * 5 3 2 37 37 H 1.08997 * 109.46873 * 89.97958 * 14 13 11 38 38 H 1.09001 * 109.46919 * 209.97779 * 14 13 11 39 39 H 1.09000 * 109.46923 * 329.97916 * 14 13 11 40 40 H 0.96697 * 114.00271 * 270.12645 * 16 15 13 41 41 H 1.08995 * 109.58648 * 173.39603 * 17 6 5 42 42 H 1.09003 * 109.58573 * 293.68265 * 17 6 5 43 43 H 1.08994 * 109.48504 * 185.40649 * 18 17 6 44 44 H 1.09002 * 109.49846 * 65.31593 * 18 17 6 45 45 H 0.97003 * 119.99412 * 334.97340 * 21 19 3 46 46 H 0.97002 * 119.99575 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6047 1.9828 -0.8406 5 6 1.6385 2.1267 1.3106 6 7 2.2450 3.4644 1.3508 7 6 1.4855 4.5564 1.5674 8 8 0.2743 4.4569 1.6053 9 6 2.1238 5.8726 1.7586 10 7 3.4181 6.1100 1.8533 11 7 3.6281 7.3670 2.0149 12 1 4.5025 7.7762 2.1092 13 6 2.4485 8.0402 2.0348 14 6 2.2684 9.5267 2.2044 15 6 1.4624 7.1217 1.8680 16 8 0.1219 7.3515 1.8192 17 6 3.6951 3.5889 1.1499 18 6 4.0733 2.8883 -0.1586 19 6 3.5652 1.4452 -0.1257 20 1 3.8546 0.9372 -1.0457 21 7 4.1507 0.7476 1.0218 22 6 5.3883 0.1714 0.9142 23 1 5.9326 0.2309 -0.0167 24 6 5.9433 -0.4891 2.0016 25 7 5.2797 -0.5620 3.1360 26 14 7.6313 -1.2756 1.8547 27 1 7.4847 -2.6793 1.3928 28 1 8.4482 -0.5150 0.8753 29 1 8.3026 -1.2579 3.1791 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.5532 2.2160 1.3586 36 1 1.9943 1.5363 2.1549 37 1 2.2782 10.0078 1.2263 38 1 1.3160 9.7235 2.6965 39 1 3.0808 9.9240 2.8128 40 1 -0.3151 7.3145 2.6809 41 1 3.9668 4.6428 1.0920 42 1 4.2208 3.1212 1.9824 43 1 5.1574 2.8898 -0.2716 44 1 3.6188 3.4150 -0.9978 45 1 3.6617 0.6938 1.8578 46 1 5.6674 -1.0239 3.8958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037819697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:12 Heat of formation + Delta-G solvation = -10.682766 kcal Electronic energy + Delta-G solvation = -28586.374510 eV Core-core repulsion = 24705.402339 eV Total energy + Delta-G solvation = -3880.972171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.79224 -41.16952 -39.15540 -38.14770 -35.90196 -35.37310 -33.64809 -33.36529 -32.04775 -31.00751 -29.95385 -27.82463 -27.02828 -25.55684 -25.01216 -24.19539 -22.35617 -22.11377 -20.80160 -19.73898 -19.44035 -19.10624 -18.09943 -17.69922 -17.10154 -16.99363 -16.58022 -16.03915 -15.89937 -15.59606 -15.18128 -15.07299 -14.82345 -14.72030 -14.56784 -14.30967 -14.08228 -13.76298 -13.68110 -13.36165 -13.20228 -12.96603 -12.83895 -12.64809 -12.62467 -12.35164 -12.10449 -11.84828 -11.81387 -11.58509 -11.46518 -11.43237 -11.13466 -10.97289 -10.68758 -10.42359 -9.74790 -9.56526 -8.90297 -7.86892 -5.13197 0.36887 0.86811 1.49701 1.50441 1.58337 1.70775 2.06004 2.21311 2.60797 3.06454 3.46623 3.58744 3.69418 3.78840 3.86770 3.93308 4.07087 4.10811 4.32791 4.39949 4.42757 4.46308 4.49179 4.62736 4.68803 4.77029 4.82689 4.86529 4.94636 4.99608 5.06642 5.07395 5.16501 5.19710 5.24584 5.29642 5.33418 5.43124 5.52967 5.61156 5.67786 6.04663 6.34403 6.38690 6.72886 6.80863 7.09138 7.41836 8.17673 8.42504 9.36487 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013867 B = 0.003927 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.747397 B = 7127.845245 C = 8583.580129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.092 4.092 4 H 0.081 0.919 5 C 0.125 3.875 6 N -0.590 5.590 7 C 0.591 3.409 8 O -0.566 6.566 9 C -0.054 4.054 10 N -0.252 5.252 11 N -0.357 5.357 12 H 0.467 0.533 13 C 0.017 3.983 14 C -0.077 4.077 15 C 0.019 3.981 16 O -0.465 6.465 17 C 0.106 3.894 18 C -0.141 4.141 19 C 0.173 3.827 20 H 0.048 0.952 21 N -0.723 5.723 22 C -0.227 4.227 23 H 0.075 0.925 24 C -0.073 4.073 25 N -0.969 5.969 26 Si 0.965 3.035 27 H -0.292 1.292 28 H -0.270 1.270 29 H -0.301 1.301 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.400 0.600 41 H 0.129 0.871 42 H 0.046 0.954 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.373 0.627 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.070 20.615 -3.412 21.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.142 4.142 3 C -0.112 4.112 4 H 0.100 0.900 5 C 0.003 3.997 6 N -0.320 5.320 7 C 0.379 3.621 8 O -0.444 6.444 9 C -0.213 4.213 10 N -0.091 5.091 11 N -0.077 5.077 12 H 0.317 0.683 13 C -0.111 4.111 14 C -0.135 4.135 15 C -0.037 4.037 16 O -0.272 6.272 17 C -0.017 4.017 18 C -0.181 4.181 19 C 0.064 3.936 20 H 0.066 0.934 21 N -0.364 5.364 22 C -0.359 4.359 23 H 0.093 0.907 24 C -0.265 4.265 25 N -0.620 5.620 26 Si 0.795 3.205 27 H -0.220 1.220 28 H -0.195 1.195 29 H -0.228 1.228 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.256 0.744 41 H 0.146 0.854 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.206 0.794 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.489 20.019 -4.088 21.157 hybrid contribution 0.557 -0.636 1.150 1.427 sum -4.933 19.383 -2.939 20.215 Atomic orbital electron populations 1.21786 0.94644 1.01998 1.01893 1.21334 0.96152 0.94857 1.01862 1.21656 0.95823 0.96655 0.97046 0.90031 1.21585 0.98729 0.81522 0.97897 1.48000 1.09279 1.05994 1.68757 1.17275 0.85712 0.82611 0.76513 1.90723 1.14007 1.85752 1.53929 1.22279 0.90905 0.95388 1.12764 1.73475 1.17011 0.99505 1.19065 1.43420 1.10043 1.03301 1.50888 0.68332 1.22063 0.85168 0.98119 1.05721 1.20499 1.05293 0.83224 1.04491 1.18010 0.85780 0.89380 1.10534 1.84839 1.14399 1.92051 1.35899 1.22250 0.77969 1.03917 0.97557 1.22394 1.01179 0.97903 0.96668 1.20439 0.91098 0.91247 0.90813 0.93391 1.42560 1.18355 1.64135 1.11329 1.19579 0.94352 1.25184 0.96789 0.90743 1.25390 1.01882 1.03209 0.96002 1.69819 1.39623 1.49746 1.02844 0.85259 0.80703 0.78345 0.76170 1.21999 1.19519 1.22799 0.93159 0.91914 0.91957 0.91823 0.93556 0.89354 0.93057 0.88963 0.88775 0.88129 0.74353 0.85434 0.93584 0.91567 0.91575 0.79353 0.94422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 9.67 71.98 0.70 -3.35 16 2 C -0.10 -3.49 5.19 30.60 0.16 -3.33 16 3 C -0.09 -3.20 2.14 -10.71 -0.02 -3.22 16 4 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 5 C 0.13 4.66 5.04 86.36 0.44 5.10 16 6 N -0.59 -21.81 2.97 -822.74 -2.45 -24.25 16 7 C 0.59 22.02 7.68 86.69 0.67 22.69 16 8 O -0.57 -23.28 15.97 -2.35 -0.04 -23.32 16 9 C -0.05 -1.69 6.84 42.45 0.29 -1.40 16 10 N -0.25 -6.71 8.68 -48.08 -0.42 -7.13 16 11 N -0.36 -6.03 6.87 -47.27 -0.32 -6.36 16 12 H 0.47 3.83 8.96 -219.99 -1.97 1.86 16 13 C 0.02 0.28 7.27 41.37 0.30 0.58 16 14 C -0.08 -0.53 10.44 71.24 0.74 0.21 16 15 C 0.02 0.47 7.28 22.57 0.16 0.64 16 16 O -0.46 -11.33 13.21 -92.91 -1.23 -12.55 16 17 C 0.11 3.86 5.85 86.35 0.51 4.36 16 18 C -0.14 -5.01 5.78 30.66 0.18 -4.84 16 19 C 0.17 6.78 2.53 45.02 0.11 6.89 16 20 H 0.05 1.90 8.08 -2.38 -0.02 1.88 16 21 N -0.72 -35.03 3.73 -322.80 -1.20 -36.23 16 22 C -0.23 -12.18 9.93 84.03 0.83 -11.35 16 23 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 24 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 25 N -0.97 -58.75 13.06 21.65 0.28 -58.47 16 26 Si 0.96 45.87 29.55 68.60 2.03 47.90 16 27 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 29 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 30 H 0.05 1.43 6.70 -2.39 -0.02 1.41 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 34 H 0.05 1.84 7.70 -2.39 -0.02 1.82 16 35 H 0.09 3.25 5.72 -2.38 -0.01 3.23 16 36 H 0.05 2.16 6.64 -2.39 -0.02 2.14 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.09 0.57 8.14 -2.39 -0.02 0.56 16 39 H 0.10 0.17 8.14 -2.39 -0.02 0.16 16 40 H 0.40 6.52 9.07 -74.06 -0.67 5.85 16 41 H 0.13 4.21 4.15 -30.54 -0.13 4.09 16 42 H 0.05 1.99 7.74 -2.39 -0.02 1.97 16 43 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.37 19.77 5.95 -92.71 -0.55 19.22 16 46 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -74.67 366.62 -0.09 -74.76 By element: Atomic # 1 Polarization: 38.57 SS G_CDS: -2.27 Total: 36.30 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 5.53 Total: 9.36 kcal Atomic # 7 Polarization: -128.33 SS G_CDS: -4.11 Total: -132.44 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -1.27 Total: -35.88 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -74.67 -0.09 -74.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037819697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.073 kcal (2) G-P(sol) polarization free energy of solvation -74.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds