Wall clock time and date at job start Tue Mar 31 2020 12:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47224 * 2 1 4 4 H 1.08993 * 109.49940 * 54.93518 * 3 2 1 5 5 C 1.53200 * 109.49955 * 294.84014 * 3 2 1 6 6 N 1.46924 * 108.77587 * 185.41376 * 5 3 2 7 7 C 1.34777 * 120.63027 * 233.63073 * 6 5 3 8 8 O 1.21279 * 119.99781 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00025 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.47161 * 180.02562 * 9 7 6 11 11 N 1.30276 * 126.28508 * 90.02368 * 10 9 7 12 12 N 1.28666 * 109.38118 * 179.97438 * 11 10 9 13 13 C 1.30285 * 109.38265 * 359.97438 * 12 11 10 14 14 C 1.50696 * 126.28003 * 180.02562 * 13 12 11 15 15 O 1.34365 * 107.43189 * 359.75815 * 13 12 11 16 16 C 1.46925 * 118.73712 * 53.60850 * 6 5 3 17 17 C 1.53161 * 108.77227 * 306.38918 * 16 6 5 18 18 C 1.53043 * 109.49511 * 175.00539 * 3 2 1 19 19 H 1.08992 * 109.45900 * 301.31934 * 18 3 2 20 20 N 1.46496 * 109.46122 * 61.29842 * 18 3 2 21 21 C 1.36945 * 119.99718 * 205.02716 * 20 18 3 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 H 1.09001 * 109.47667 * 59.99680 * 1 2 3 30 30 H 1.09001 * 109.47535 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46846 * 299.99530 * 1 2 3 32 32 H 1.09006 * 109.46603 * 239.99976 * 2 1 3 33 33 H 1.08998 * 109.47029 * 120.00686 * 2 1 3 34 34 H 1.08998 * 109.58526 * 305.20582 * 5 3 2 35 35 H 1.09003 * 109.58452 * 65.48005 * 5 3 2 36 36 H 1.09004 * 109.46942 * 300.00281 * 9 7 6 37 37 H 1.09001 * 109.47464 * 59.99833 * 9 7 6 38 38 H 1.08996 * 109.47044 * 90.03201 * 14 13 12 39 39 H 1.09005 * 109.46744 * 210.02625 * 14 13 12 40 40 H 1.08997 * 109.47479 * 330.02625 * 14 13 12 41 41 H 1.09000 * 109.58821 * 66.18017 * 16 6 5 42 42 H 1.09002 * 109.58381 * 186.45665 * 16 6 5 43 43 H 1.09003 * 109.50425 * 294.68620 * 17 16 6 44 44 H 1.09003 * 109.47956 * 174.59174 * 17 16 6 45 45 H 0.96996 * 120.00499 * 25.02446 * 20 18 3 46 46 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6048 1.9822 0.8409 5 6 1.6385 2.1268 -1.3105 6 7 2.2451 3.4643 -1.3507 7 6 1.4857 4.5565 -1.5672 8 8 0.2897 4.4406 -1.7316 9 6 2.1228 5.9216 -1.6062 10 6 1.0639 6.9631 -1.8608 11 7 0.3718 7.5961 -0.9567 12 7 -0.4394 8.4116 -1.5333 13 6 -0.2920 8.3271 -2.8250 14 6 -1.0509 9.1136 -3.8624 15 8 0.6651 7.4143 -3.0621 16 6 3.6953 3.5887 -1.1499 17 6 4.0735 2.8881 0.1586 18 6 3.5653 1.4449 0.1256 19 1 3.8546 0.9369 1.0455 20 7 4.1506 0.7474 -1.0220 21 6 5.3883 0.1711 -0.9145 22 1 5.9328 0.2312 0.0161 23 6 5.9427 -0.4902 -2.0017 24 7 5.2791 -0.5630 -3.1361 25 14 7.6312 -1.2756 -1.8553 26 1 7.9935 -1.9146 -3.1459 27 1 8.6344 -0.2336 -1.5195 28 1 7.6077 -2.3037 -0.7840 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.9964 1.5377 -2.1549 35 1 0.5531 2.2138 -1.3597 36 1 2.6082 6.1234 -0.6512 37 1 2.8642 5.9540 -2.4045 38 1 -0.5170 10.0388 -4.0794 39 1 -1.1387 8.5225 -4.7741 40 1 -2.0459 9.3484 -3.4844 41 1 4.2209 3.1189 -1.9812 42 1 3.9674 4.6427 -1.0945 43 1 3.6191 3.4147 0.9979 44 1 5.1577 2.8895 0.2714 45 1 3.6616 0.6937 -1.8580 46 1 5.6668 -1.0248 -3.8960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037838116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:14 Heat of formation + Delta-G solvation = 8.965257 kcal Electronic energy + Delta-G solvation = -28023.886946 eV Core-core repulsion = 24143.766777 eV Total energy + Delta-G solvation = -3880.120169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.32490 -40.22552 -37.98790 -36.25762 -34.59708 -33.89572 -33.63838 -31.78061 -31.21630 -29.49642 -28.62030 -27.37973 -25.03584 -23.90123 -23.55456 -22.99076 -22.56350 -20.87217 -19.82481 -18.40723 -17.79483 -17.39734 -17.19602 -16.74933 -15.99631 -15.63016 -14.96498 -14.71266 -14.56079 -14.40811 -14.03722 -13.71243 -13.58228 -13.39326 -13.31687 -13.11215 -13.09157 -12.62556 -12.47155 -12.41666 -12.29834 -11.95223 -11.79230 -11.45061 -11.14493 -11.08713 -11.01452 -10.85994 -10.77563 -10.36349 -10.31776 -10.24046 -9.97322 -9.84026 -9.60269 -9.48572 -8.97368 -8.36541 -7.03425 -5.84089 -3.12849 0.99529 2.04278 2.25644 2.58299 3.10935 3.38206 3.43798 3.44549 3.62429 4.17345 4.40830 4.52864 4.57047 4.86127 4.93076 5.00320 5.05552 5.18120 5.22361 5.27759 5.31273 5.37790 5.45490 5.48819 5.53908 5.57933 5.66229 5.74301 5.76374 5.87282 6.02348 6.10433 6.11973 6.29180 6.32259 6.37288 6.51280 6.55124 6.65292 6.70951 6.87971 6.94428 7.51666 7.63558 8.14950 8.18704 8.34402 9.46118 10.02206 10.37207 11.38111 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017206 B = 0.003068 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.975072 B = 9123.756770 C = 9932.163916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.067 0.933 5 C 0.119 3.881 6 N -0.594 5.594 7 C 0.518 3.482 8 O -0.543 6.543 9 C -0.048 4.048 10 C 0.191 3.809 11 N -0.276 5.276 12 N -0.289 5.289 13 C 0.160 3.840 14 C -0.057 4.057 15 O -0.220 6.220 16 C 0.109 3.891 17 C -0.151 4.151 18 C 0.178 3.822 19 H 0.052 0.948 20 N -0.719 5.719 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.292 1.292 27 H -0.287 1.287 28 H -0.287 1.287 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.141 0.859 37 H 0.128 0.872 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.077 0.923 45 H 0.384 0.616 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.999 14.590 0.775 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.086 0.914 5 C -0.002 4.002 6 N -0.326 5.326 7 C 0.304 3.696 8 O -0.421 6.421 9 C -0.089 4.089 10 C -0.021 4.021 11 N -0.123 5.123 12 N -0.137 5.137 13 C -0.051 4.051 14 C -0.114 4.114 15 O -0.099 6.099 16 C -0.013 4.013 17 C -0.192 4.192 18 C 0.068 3.932 19 H 0.070 0.930 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.207 4.207 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.214 1.214 28 H -0.214 1.214 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.159 0.841 37 H 0.146 0.854 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.124 0.876 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.896 14.814 1.862 17.380 hybrid contribution 1.460 -0.894 -1.340 2.174 sum -7.436 13.919 0.522 15.790 Atomic orbital electron populations 1.21859 0.96812 1.01070 1.01367 1.21414 0.94272 0.95663 1.03425 1.21759 0.97429 0.96218 0.96932 0.91439 1.21738 0.98854 0.81089 0.98567 1.48064 1.08818 1.06366 1.69372 1.19881 0.86929 0.85244 0.77544 1.90729 1.14695 1.86324 1.50401 1.20198 0.93490 0.87956 1.07231 1.26944 0.98947 0.98378 0.77809 1.74354 1.04768 1.06038 1.27100 1.74365 1.18083 1.17413 1.03818 1.27961 0.90225 0.91462 0.95471 1.20339 0.99028 0.97927 0.94149 1.84756 1.44538 1.45319 1.35327 1.21847 0.78780 1.00116 1.00599 1.22534 1.02019 0.99371 0.95278 1.20224 0.89671 0.90626 0.92720 0.92985 1.42476 1.19091 1.64003 1.10541 1.19165 0.93596 1.27139 0.97070 0.91286 1.24700 0.98544 1.01403 0.96033 1.69636 1.38193 1.47989 1.02247 0.86317 0.84324 0.79212 0.76587 1.21824 1.21358 1.21363 0.92841 0.93127 0.93341 0.90476 0.91942 0.90464 0.89514 0.84133 0.85374 0.88381 0.88845 0.87561 0.89188 0.91171 0.93053 0.90490 0.78109 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 37.16 0.36 -1.72 16 2 C -0.11 -1.70 5.19 -26.73 -0.14 -1.84 16 3 C -0.10 -1.61 2.14 -90.50 -0.19 -1.80 16 4 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 5 C 0.12 1.92 5.03 -3.71 -0.02 1.91 16 6 N -0.59 -8.84 2.97 -172.79 -0.51 -9.35 16 7 C 0.52 7.84 7.69 -10.99 -0.08 7.75 16 8 O -0.54 -10.28 15.45 5.56 0.09 -10.19 16 9 C -0.05 -0.54 4.67 -29.04 -0.14 -0.68 16 10 C 0.19 2.68 6.97 -12.94 -0.09 2.59 16 11 N -0.28 -4.40 12.22 32.55 0.40 -4.00 16 12 N -0.29 -4.32 12.22 32.55 0.40 -3.92 16 13 C 0.16 1.91 8.48 -12.94 -0.11 1.80 16 14 C -0.06 -0.34 10.51 36.00 0.38 0.04 16 15 O -0.22 -2.96 10.87 5.36 0.06 -2.90 16 16 C 0.11 1.51 6.08 -3.73 -0.02 1.48 16 17 C -0.15 -2.25 5.78 -26.62 -0.15 -2.40 16 18 C 0.18 3.11 2.53 -67.89 -0.17 2.93 16 19 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 20 N -0.72 -15.65 3.72 -53.39 -0.20 -15.84 16 21 C -0.24 -5.97 9.93 -15.06 -0.15 -6.12 16 22 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -26.29 13.06 55.49 0.72 -25.57 16 25 Si 0.90 21.21 29.55 -169.99 -5.02 16.19 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H 0.05 0.73 6.70 -51.93 -0.35 0.38 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.39 7.70 -51.93 -0.40 0.99 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.38 6.64 -51.93 -0.34 1.04 16 35 H 0.09 1.44 5.73 -51.93 -0.30 1.14 16 36 H 0.14 1.25 7.69 -51.93 -0.40 0.85 16 37 H 0.13 1.09 7.94 -51.93 -0.41 0.68 16 38 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 1.49 7.74 -51.93 -0.40 1.09 16 42 H 0.07 0.72 5.93 -51.93 -0.31 0.41 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.38 9.01 5.94 -40.82 -0.24 8.76 16 46 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 371.08 15.07 5.59 5.59 Total: -1.00 -32.97 371.08 -6.03 -39.00 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.92 Total: 7.44 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -0.63 Total: 3.57 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 0.81 Total: -58.69 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.14 Total: -13.10 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.97 -6.03 -39.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037838116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.968 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds