Wall clock time and date at job start Tue Mar 31 2020 12:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47266 * 2 1 4 4 H 1.09004 * 109.51583 * 305.07859 * 3 2 1 5 5 C 1.53188 * 109.50022 * 65.15805 * 3 2 1 6 6 N 1.46924 * 108.77780 * 174.58802 * 5 3 2 7 7 C 1.34771 * 120.62958 * 126.41070 * 6 5 3 8 8 O 1.21280 * 120.00414 * 0.02562 * 7 6 5 9 9 C 1.50711 * 119.99990 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.47081 * 180.02562 * 9 7 6 11 11 N 1.30278 * 126.27996 * 89.69575 * 10 9 7 12 12 N 1.28672 * 109.37788 * 179.82683 * 11 10 9 13 13 C 1.30273 * 109.38215 * 0.44055 * 12 11 10 14 14 C 1.50701 * 126.28038 * 179.73922 * 13 12 11 15 15 O 1.34360 * 126.28660 * 269.99923 * 10 9 7 16 16 C 1.46931 * 118.73773 * 306.39768 * 6 5 3 17 17 C 1.53185 * 108.77641 * 53.60349 * 16 6 5 18 18 C 1.53035 * 109.49709 * 185.00288 * 3 2 1 19 19 H 1.08998 * 109.46520 * 58.67400 * 18 3 2 20 20 N 1.46500 * 109.45711 * 298.69630 * 18 3 2 21 21 C 1.36943 * 119.99878 * 155.00084 * 20 18 3 22 22 H 1.07996 * 119.99698 * 0.02562 * 21 20 18 23 23 C 1.38809 * 119.99902 * 179.97438 * 21 20 18 24 24 N 1.31620 * 120.00319 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00011 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 59.99967 * 25 23 21 27 27 H 1.48503 * 109.47261 * 300.00148 * 25 23 21 28 28 H 1.48500 * 109.47454 * 180.02562 * 25 23 21 29 29 H 1.08998 * 109.47047 * 60.00046 * 1 2 3 30 30 H 1.09003 * 109.47236 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46967 * 300.00157 * 1 2 3 32 32 H 1.08999 * 109.47345 * 239.99459 * 2 1 3 33 33 H 1.09002 * 109.46848 * 119.99488 * 2 1 3 34 34 H 1.09006 * 109.58625 * 294.37701 * 5 3 2 35 35 H 1.09005 * 109.58706 * 54.65764 * 5 3 2 36 36 H 1.08992 * 109.47258 * 300.00607 * 9 7 6 37 37 H 1.08998 * 109.46461 * 60.00436 * 9 7 6 38 38 H 1.08998 * 109.46500 * 269.99425 * 14 13 12 39 39 H 1.08994 * 109.47087 * 29.99208 * 14 13 12 40 40 H 1.08999 * 109.47104 * 149.99930 * 14 13 12 41 41 H 1.08997 * 109.58256 * 173.39535 * 16 6 5 42 42 H 1.09001 * 109.58249 * 293.67215 * 16 6 5 43 43 H 1.09003 * 109.49822 * 185.41272 * 17 16 6 44 44 H 1.08999 * 109.49921 * 65.32134 * 17 16 6 45 45 H 0.97000 * 120.00415 * 335.00032 * 20 18 3 46 46 H 0.97001 * 119.99542 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9826 -0.8408 5 6 1.6386 2.1268 1.3104 6 7 2.2451 3.4644 1.3506 7 6 1.4858 4.5564 1.5679 8 8 0.2899 4.4405 1.7330 9 6 2.1228 5.9218 1.6057 10 6 1.0641 6.9630 1.8629 11 7 0.6716 7.3917 3.0288 12 7 -0.2438 8.2819 2.8703 13 6 -0.4729 8.4448 1.5983 14 6 -1.4747 9.3899 0.9865 15 8 0.3479 7.6155 0.9320 16 6 3.6953 3.5888 1.1496 17 6 4.0737 2.8881 -0.1589 18 6 3.5652 1.4450 -0.1258 19 1 3.8546 0.9370 -1.0457 20 7 4.1507 0.7475 1.0218 21 6 5.3885 0.1718 0.9145 22 1 5.9333 0.2322 -0.0161 23 6 5.9435 -0.4886 2.0020 24 7 5.2798 -0.5618 3.1363 25 14 7.6323 -1.2734 1.8559 26 1 8.6351 -0.2311 1.5192 27 1 7.6091 -2.3021 0.7851 28 1 7.9951 -1.9114 3.1468 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.5532 2.2162 1.3584 35 1 1.9943 1.5365 2.1549 36 1 2.8652 5.9544 2.4029 37 1 2.6067 6.1234 0.6501 38 1 -2.4321 8.8813 0.8737 39 1 -1.5983 10.2576 1.6344 40 1 -1.1181 9.7142 0.0088 41 1 3.9670 4.6428 1.0917 42 1 4.2209 3.1212 1.9823 43 1 5.1578 2.8894 -0.2721 44 1 3.6193 3.4147 -0.9982 45 1 3.6616 0.6936 1.8578 46 1 4.4030 -0.1539 3.2123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037838118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:17 Heat of formation + Delta-G solvation = 9.895539 kcal Electronic energy + Delta-G solvation = -28089.586098 eV Core-core repulsion = 24209.506269 eV Total energy + Delta-G solvation = -3880.079829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.36531 -40.32264 -38.10275 -36.29659 -34.72655 -34.10631 -33.72197 -31.90849 -31.27212 -29.45785 -28.52951 -27.39975 -25.03324 -23.95760 -23.50137 -23.04637 -22.60790 -21.00904 -19.93406 -18.60345 -17.85474 -17.42513 -17.26817 -16.86442 -16.05580 -15.73575 -15.10884 -14.90802 -14.76391 -14.37898 -13.98771 -13.73240 -13.67570 -13.49347 -13.42812 -13.21117 -13.11664 -12.91772 -12.52920 -12.44671 -12.35161 -11.98230 -11.86331 -11.64235 -11.28461 -11.13016 -11.02730 -10.77651 -10.65066 -10.42232 -10.29931 -10.05831 -10.02530 -9.93992 -9.54098 -9.21194 -8.98911 -8.46522 -7.10613 -6.15135 -3.16468 0.95473 1.99097 2.22904 2.50589 3.02637 3.47643 3.50105 3.57666 3.68128 4.13214 4.32567 4.51632 4.61619 4.80323 4.90666 4.92651 5.00202 5.09926 5.15417 5.18013 5.27356 5.27774 5.35259 5.41338 5.53785 5.54113 5.57407 5.61184 5.64368 5.76329 5.87839 5.99974 6.01690 6.17250 6.21693 6.27644 6.40471 6.44873 6.52455 6.61185 6.75794 6.82752 7.42130 7.74995 8.06716 8.15621 8.69161 9.14982 10.01487 10.16530 11.32270 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018296 B = 0.003058 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.013355 B = 9154.968324 C = 9976.436990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.105 4.105 4 H 0.068 0.932 5 C 0.120 3.880 6 N -0.596 5.596 7 C 0.519 3.481 8 O -0.542 6.542 9 C -0.047 4.047 10 C 0.189 3.811 11 N -0.274 5.274 12 N -0.288 5.288 13 C 0.159 3.841 14 C -0.056 4.056 15 O -0.221 6.221 16 C 0.109 3.891 17 C -0.150 4.150 18 C 0.184 3.816 19 H 0.053 0.947 20 N -0.730 5.730 21 C -0.330 4.330 22 H 0.064 0.936 23 C -0.043 4.043 24 N -0.942 5.942 25 Si 1.077 2.923 26 H -0.296 1.296 27 H -0.296 1.296 28 H -0.286 1.286 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.142 0.858 37 H 0.128 0.872 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.050 0.950 45 H 0.367 0.633 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.994 15.494 -8.846 19.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.125 4.125 4 H 0.086 0.914 5 C -0.002 4.002 6 N -0.328 5.328 7 C 0.305 3.695 8 O -0.420 6.420 9 C -0.088 4.088 10 C -0.022 4.022 11 N -0.120 5.120 12 N -0.136 5.136 13 C -0.051 4.051 14 C -0.114 4.114 15 O -0.101 6.101 16 C -0.013 4.013 17 C -0.191 4.191 18 C 0.074 3.926 19 H 0.071 0.929 20 N -0.373 5.373 21 C -0.461 4.461 22 H 0.082 0.918 23 C -0.240 4.240 24 N -0.587 5.587 25 Si 0.908 3.092 26 H -0.223 1.223 27 H -0.224 1.224 28 H -0.211 1.211 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.160 0.840 37 H 0.146 0.854 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.201 0.799 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.401 14.682 -6.841 18.247 hybrid contribution -1.010 0.683 -1.921 2.275 sum -9.411 15.365 -8.762 20.036 Atomic orbital electron populations 1.21858 0.96651 1.01199 1.01402 1.21404 0.94405 0.95588 1.03299 1.21785 0.97499 0.96239 0.96947 0.91359 1.21712 0.98981 0.81182 0.98319 1.48060 1.08826 1.06356 1.69534 1.19905 0.86938 0.85296 0.77401 1.90732 1.14739 1.86345 1.50164 1.20188 0.93480 0.87665 1.07474 1.26927 0.96070 0.96713 0.82528 1.74378 1.08260 1.07691 1.21689 1.74377 1.11467 1.12818 1.14919 1.27970 0.94831 0.94278 0.88056 1.20341 0.93958 0.95433 1.01687 1.84740 1.41726 1.43558 1.40029 1.21837 0.78755 1.00248 1.00442 1.22524 1.02124 0.99277 0.95202 1.20147 0.89441 0.90564 0.92476 0.92927 1.42483 1.19445 1.65182 1.10226 1.19993 0.94622 1.31839 0.99648 0.91836 1.25692 1.05553 1.00084 0.92717 1.70908 1.14440 1.47491 1.25859 0.83274 0.74607 0.75891 0.75410 1.22343 1.22373 1.21134 0.93275 0.93009 0.92812 0.91843 0.90847 0.89357 0.90920 0.84030 0.85438 0.88282 0.87549 0.88934 0.91007 0.89477 0.90409 0.93087 0.79863 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.67 37.16 0.36 -1.67 16 2 C -0.11 -1.67 5.19 -26.73 -0.14 -1.81 16 3 C -0.10 -1.61 2.14 -90.50 -0.19 -1.80 16 4 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 5 C 0.12 1.91 5.03 -3.71 -0.02 1.89 16 6 N -0.60 -8.79 2.97 -172.77 -0.51 -9.30 16 7 C 0.52 7.78 7.69 -10.98 -0.08 7.70 16 8 O -0.54 -10.17 15.45 5.56 0.09 -10.08 16 9 C -0.05 -0.53 4.67 -29.03 -0.14 -0.66 16 10 C 0.19 2.64 6.97 -12.94 -0.09 2.55 16 11 N -0.27 -4.43 12.22 32.55 0.40 -4.03 16 12 N -0.29 -4.32 12.22 32.55 0.40 -3.92 16 13 C 0.16 1.88 8.48 -12.94 -0.11 1.77 16 14 C -0.06 -0.32 10.51 36.01 0.38 0.05 16 15 O -0.22 -2.89 10.87 5.40 0.06 -2.84 16 16 C 0.11 1.52 6.08 -3.71 -0.02 1.49 16 17 C -0.15 -2.23 5.78 -26.61 -0.15 -2.39 16 18 C 0.18 3.22 2.53 -67.89 -0.17 3.05 16 19 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 20 N -0.73 -15.96 3.72 -53.39 -0.20 -16.15 16 21 C -0.33 -8.41 9.93 -15.06 -0.15 -8.56 16 22 H 0.06 1.61 7.83 -52.49 -0.41 1.20 16 23 C -0.04 -1.16 5.50 -17.43 -0.10 -1.25 16 24 N -0.94 -27.60 13.70 55.49 0.76 -26.84 16 25 Si 1.08 24.72 29.92 -169.99 -5.09 19.64 16 26 H -0.30 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.30 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.72 6.70 -51.93 -0.35 0.37 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.31 7.70 -51.93 -0.40 0.91 16 34 H 0.09 1.45 5.73 -51.93 -0.30 1.15 16 35 H 0.07 1.28 6.65 -51.93 -0.35 0.94 16 36 H 0.14 1.31 7.94 -51.93 -0.41 0.90 16 37 H 0.13 1.01 7.69 -51.93 -0.40 0.61 16 38 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.73 5.93 -51.93 -0.31 0.42 16 42 H 0.09 1.46 7.74 -51.93 -0.40 1.06 16 43 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.37 8.46 4.78 -40.82 -0.19 8.26 16 46 H 0.25 7.33 6.77 -40.82 -0.28 7.05 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -34.27 369.39 -5.97 -40.24 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.81 Total: 7.37 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -0.63 Total: 0.36 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: 0.84 Total: -60.25 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.14 Total: -12.92 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.09 Total: 19.64 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.27 -5.97 -40.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037838118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.138 kcal (2) G-P(sol) polarization free energy of solvation -34.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds