Wall clock time and date at job start Tue Mar 31 2020 12:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47189 * 2 1 4 4 H 1.08999 * 109.49691 * 304.94131 * 3 2 1 5 5 C 1.53196 * 109.49659 * 65.00240 * 3 2 1 6 6 N 1.46923 * 108.77510 * 174.62408 * 5 3 2 7 7 C 1.34777 * 120.63273 * 126.37051 * 6 5 3 8 8 O 1.21279 * 120.00166 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99762 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 6 11 11 N 1.30280 * 126.28271 * 90.02375 * 10 9 7 12 12 N 1.28664 * 109.38129 * 179.97438 * 11 10 9 13 13 C 1.30280 * 109.38151 * 0.02562 * 12 11 10 14 14 C 1.50700 * 126.28024 * 179.97438 * 13 12 11 15 15 O 1.34360 * 126.28316 * 269.71130 * 10 9 7 16 16 C 1.46933 * 118.73771 * 306.63640 * 6 5 3 17 17 C 1.52764 * 109.00223 * 53.31664 * 16 6 5 18 18 C 1.53037 * 109.52633 * 184.85674 * 3 2 1 19 19 H 1.09000 * 109.45865 * 298.68491 * 18 3 2 20 20 N 1.46503 * 109.46211 * 58.64720 * 18 3 2 21 21 C 1.36934 * 119.99899 * 205.00241 * 20 18 3 22 22 H 1.07995 * 120.00171 * 359.97438 * 21 20 18 23 23 C 1.38814 * 119.99614 * 180.02562 * 21 20 18 24 24 N 1.31623 * 119.99552 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00108 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47111 * 90.00263 * 25 23 21 27 27 H 1.48502 * 109.46908 * 209.99891 * 25 23 21 28 28 H 1.48499 * 109.46985 * 330.00013 * 25 23 21 29 29 H 1.09002 * 109.46671 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46669 * 299.99525 * 1 2 3 31 31 H 1.08993 * 109.47043 * 59.99874 * 1 2 3 32 32 H 1.09006 * 109.47057 * 240.00326 * 2 1 3 33 33 H 1.08997 * 109.47479 * 120.00364 * 2 1 3 34 34 H 1.08994 * 109.58890 * 54.83238 * 5 3 2 35 35 H 1.09004 * 109.58490 * 294.40834 * 5 3 2 36 36 H 1.09000 * 109.47318 * 299.99141 * 9 7 6 37 37 H 1.09000 * 109.47161 * 59.99772 * 9 7 6 38 38 H 1.09004 * 109.46700 * 89.97948 * 14 13 12 39 39 H 1.08999 * 109.47027 * 209.97236 * 14 13 12 40 40 H 1.08999 * 109.47660 * 329.97734 * 14 13 12 41 41 H 1.08995 * 109.58414 * 173.14825 * 16 6 5 42 42 H 1.08998 * 109.58818 * 293.57668 * 16 6 5 43 43 H 1.09006 * 109.56079 * 185.55200 * 17 16 6 44 44 H 1.09000 * 109.36254 * 65.49925 * 17 16 6 45 45 H 0.96995 * 119.99751 * 25.00420 * 20 18 3 46 46 H 0.97008 * 119.99504 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6351 2.1280 1.3088 6 7 2.2408 3.4659 1.3490 7 6 1.4803 4.5579 1.5626 8 8 0.2839 4.4416 1.7235 9 6 2.1167 5.9234 1.6016 10 6 1.0566 6.9646 1.8528 11 7 0.6629 7.3990 3.0162 12 7 -0.2557 8.2849 2.8528 13 6 -0.4797 8.4456 1.5795 14 6 -1.4794 9.3893 0.9620 15 8 0.3481 7.6196 0.9177 16 6 3.6906 3.5914 1.1459 17 6 4.0733 2.8890 -0.1556 18 6 3.5655 1.4457 -0.1221 19 1 3.9993 0.9279 0.7333 20 7 3.9578 0.7615 -1.3568 21 6 5.1964 0.1863 -1.4569 22 1 5.8843 0.2373 -0.6259 23 6 5.5682 -0.4614 -2.6270 24 7 6.7590 -1.0139 -2.7234 25 14 4.3787 -0.5490 -4.0647 26 1 4.5802 0.6288 -4.9463 27 1 4.6260 -1.7932 -4.8366 28 1 2.9843 -0.5522 -3.5538 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.9913 1.5400 2.1547 35 1 0.5496 2.2168 1.3542 36 1 2.8561 5.9570 2.4017 37 1 2.6041 6.1245 0.6476 38 1 -1.0046 10.3536 0.7806 39 1 -1.8343 8.9758 0.0181 40 1 -2.3220 9.5211 1.6407 41 1 3.9609 4.6455 1.0839 42 1 4.2179 3.1252 1.9782 43 1 5.1577 2.8908 -0.2661 44 1 3.6206 3.4146 -0.9964 45 1 3.3401 0.7161 -2.1033 46 1 7.0187 -1.4669 -3.5410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037838119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:21 Heat of formation + Delta-G solvation = 11.034749 kcal Electronic energy + Delta-G solvation = -27728.767068 eV Core-core repulsion = 23848.736639 eV Total energy + Delta-G solvation = -3880.030429 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.43523 -40.41493 -38.10866 -36.36609 -35.02166 -34.12304 -33.74261 -31.89410 -31.37478 -30.02471 -29.03368 -27.50464 -25.23287 -24.09085 -23.21841 -22.78515 -22.38911 -20.93707 -20.18621 -19.32026 -18.03437 -17.56985 -17.35326 -16.96045 -16.18073 -15.80485 -15.06115 -14.96353 -14.79332 -14.44748 -14.02792 -13.83285 -13.69505 -13.55081 -13.39243 -13.23270 -13.15646 -12.78045 -12.62602 -12.55790 -12.39782 -12.09101 -12.03912 -11.91629 -11.49085 -11.19485 -11.10951 -11.08125 -10.86902 -10.51129 -10.40009 -10.27567 -10.17279 -9.83263 -9.65115 -9.62950 -9.00135 -8.70896 -7.34946 -5.84404 -3.20256 0.88361 1.92497 2.14496 2.36327 2.87041 3.31263 3.34480 3.40424 3.49578 4.05787 4.18644 4.44919 4.52133 4.71426 4.80721 4.85695 4.91898 4.96382 5.03821 5.08479 5.11628 5.21829 5.23596 5.32454 5.40324 5.45758 5.48780 5.51091 5.52177 5.71214 5.83170 5.93331 5.94864 6.00295 6.15558 6.18433 6.27035 6.33956 6.45594 6.63288 6.70908 6.85295 7.22704 7.90721 7.91727 8.07978 8.34632 9.12557 9.85357 10.04879 11.33727 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018931 B = 0.002843 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.672042 B = 9846.434262 C =10150.866273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.109 4.109 4 H 0.069 0.931 5 C 0.120 3.880 6 N -0.601 5.601 7 C 0.521 3.479 8 O -0.538 6.538 9 C -0.048 4.048 10 C 0.187 3.813 11 N -0.275 5.275 12 N -0.289 5.289 13 C 0.162 3.838 14 C -0.057 4.057 15 O -0.220 6.220 16 C 0.102 3.898 17 C -0.154 4.154 18 C 0.188 3.812 19 H 0.058 0.942 20 N -0.745 5.745 21 C -0.243 4.243 22 H 0.091 0.909 23 C 0.006 3.994 24 N -0.932 5.932 25 Si 0.882 3.118 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.361 0.639 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.392 16.627 7.300 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.129 4.129 4 H 0.087 0.913 5 C -0.002 4.002 6 N -0.334 5.334 7 C 0.306 3.694 8 O -0.415 6.415 9 C -0.089 4.089 10 C -0.024 4.024 11 N -0.121 5.121 12 N -0.136 5.136 13 C -0.049 4.049 14 C -0.115 4.115 15 O -0.099 6.099 16 C -0.020 4.020 17 C -0.195 4.195 18 C 0.078 3.922 19 H 0.076 0.924 20 N -0.386 5.386 21 C -0.373 4.373 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.580 5.580 25 Si 0.712 3.288 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.160 0.840 37 H 0.147 0.853 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.125 0.875 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.194 0.806 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.865 16.597 8.699 22.729 hybrid contribution -0.460 -0.298 -2.508 2.567 sum -13.325 16.298 6.191 21.944 Atomic orbital electron populations 1.21856 0.96632 1.01244 1.01414 1.21465 0.94547 0.95593 1.03529 1.21841 0.97674 0.96388 0.96961 0.91257 1.21784 0.99574 0.80971 0.97866 1.48105 1.08718 1.06519 1.70009 1.19931 0.86942 0.85301 0.77181 1.90745 1.14665 1.86291 1.49822 1.20189 0.93465 0.87585 1.07626 1.26897 0.96309 0.96746 0.82480 1.74355 1.08242 1.07732 1.21801 1.74375 1.11491 1.12977 1.14803 1.27985 0.94535 0.94262 0.88081 1.20357 0.94274 0.95000 1.01894 1.84754 1.41752 1.43485 1.39941 1.21901 0.78989 1.01362 0.99794 1.22599 1.02891 0.98883 0.95116 1.20160 0.90586 0.90636 0.90802 0.92378 1.42770 1.16498 1.66267 1.13095 1.19035 0.90347 1.27479 1.00460 0.89162 1.24662 0.96389 1.00209 0.97698 1.69699 1.19200 1.41467 1.27623 0.86601 0.81116 0.77354 0.83715 1.21193 1.21782 1.20278 0.92982 0.92952 0.93114 0.90362 0.91849 0.91056 0.88987 0.84006 0.85252 0.88299 0.88819 0.87500 0.90295 0.90585 0.89710 0.92193 0.80601 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.67 37.16 0.36 -1.58 16 2 C -0.11 -1.64 5.31 -26.73 -0.14 -1.78 16 3 C -0.11 -1.56 1.92 -90.50 -0.17 -1.74 16 4 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 5 C 0.12 1.55 5.33 -3.71 -0.02 1.53 16 6 N -0.60 -7.19 2.98 -173.02 -0.52 -7.71 16 7 C 0.52 6.70 7.69 -10.98 -0.08 6.61 16 8 O -0.54 -9.09 15.45 5.56 0.09 -9.01 16 9 C -0.05 -0.45 4.68 -29.03 -0.14 -0.58 16 10 C 0.19 2.37 6.97 -12.94 -0.09 2.28 16 11 N -0.27 -4.03 12.22 32.55 0.40 -3.64 16 12 N -0.29 -4.02 12.22 32.55 0.40 -3.62 16 13 C 0.16 1.78 8.48 -12.94 -0.11 1.67 16 14 C -0.06 -0.30 10.51 36.01 0.38 0.08 16 15 O -0.22 -2.71 10.87 5.39 0.06 -2.65 16 16 C 0.10 1.05 6.31 -3.93 -0.02 1.03 16 17 C -0.15 -2.16 5.64 -26.83 -0.15 -2.31 16 18 C 0.19 3.12 2.20 -67.89 -0.15 2.97 16 19 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 20 N -0.74 -15.88 4.14 -53.38 -0.22 -16.10 16 21 C -0.24 -6.33 10.41 -15.06 -0.16 -6.49 16 22 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 23 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 24 N -0.93 -28.15 13.97 55.49 0.78 -27.37 16 25 Si 0.88 21.24 27.74 -169.99 -4.71 16.53 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.61 6.70 -51.93 -0.35 0.27 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.34 7.22 -51.93 -0.37 0.96 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.28 5.72 -51.93 -0.30 0.98 16 36 H 0.14 0.95 7.95 -51.93 -0.41 0.54 16 37 H 0.13 0.86 7.68 -51.93 -0.40 0.46 16 38 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.57 5.93 -51.93 -0.31 0.26 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.36 7.79 5.37 -40.82 -0.22 7.57 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 371.53 15.07 5.60 5.60 Total: -1.00 -35.25 371.53 -5.75 -41.01 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.02 Total: 5.18 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.60 Total: 1.78 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.83 Total: -58.43 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.14 Total: -11.66 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.71 Total: 16.53 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.25 -5.75 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037838119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.040 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds