Wall clock time and date at job start Tue Mar 31 2020 12:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47223 * 2 1 4 4 H 1.08999 * 109.50181 * 55.06194 * 3 2 1 5 5 C 1.53195 * 109.49698 * 294.99630 * 3 2 1 6 6 N 1.46922 * 108.77394 * 185.41268 * 5 3 2 7 7 C 1.34777 * 120.63277 * 233.58545 * 6 5 3 8 8 O 1.21734 * 119.99443 * 355.99623 * 7 6 5 9 9 C 1.46378 * 119.99914 * 175.72296 * 7 6 5 10 10 N 1.38810 * 126.82773 * 41.09921 * 9 7 6 11 11 H 0.96997 * 126.54658 * 0.02562 * 10 9 7 12 12 C 1.34945 * 106.91082 * 179.89659 * 10 9 7 13 13 O 1.35214 * 125.49190 * 180.15551 * 12 10 9 14 14 N 1.31536 * 109.01669 * 0.37464 * 12 10 9 15 15 C 1.33222 * 109.76033 * 359.76085 * 14 12 10 16 16 C 1.50703 * 126.02000 * 180.02562 * 15 14 12 17 17 C 1.46933 * 118.73972 * 53.86694 * 6 5 3 18 18 C 1.53631 * 108.53833 * 306.09155 * 17 6 5 19 19 C 1.53030 * 109.24481 * 54.85484 * 18 17 6 20 20 H 1.09010 * 109.46220 * 58.52925 * 19 18 17 21 21 N 1.46491 * 109.46132 * 178.49030 * 19 18 17 22 22 C 1.36941 * 120.00248 * 275.07047 * 21 19 18 23 23 H 1.07997 * 119.99828 * 359.97438 * 22 21 19 24 24 C 1.38815 * 120.00398 * 180.02562 * 22 21 19 25 25 N 1.31617 * 120.00122 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 119.99638 * 359.97438 * 24 22 21 27 27 H 1.48495 * 109.47401 * 90.00652 * 26 24 22 28 28 H 1.48503 * 109.46830 * 210.00353 * 26 24 22 29 29 H 1.48499 * 109.47353 * 330.00117 * 26 24 22 30 30 H 1.09002 * 109.47343 * 300.00679 * 1 2 3 31 31 H 1.09004 * 109.47344 * 59.99951 * 1 2 3 32 32 H 1.08997 * 109.47479 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47200 * 239.99587 * 2 1 3 34 34 H 1.09001 * 109.47091 * 119.99579 * 2 1 3 35 35 H 1.09001 * 109.58224 * 65.62964 * 5 3 2 36 36 H 1.09003 * 109.58510 * 305.20097 * 5 3 2 37 37 H 0.96703 * 113.99836 * 270.27116 * 13 12 10 38 38 H 1.09002 * 109.46948 * 269.95645 * 16 15 14 39 39 H 1.08997 * 109.46628 * 29.96166 * 16 15 14 40 40 H 1.08995 * 109.47133 * 149.95730 * 16 15 14 41 41 H 1.09001 * 109.58857 * 65.92055 * 17 6 5 42 42 H 1.08993 * 109.58686 * 186.35045 * 17 6 5 43 43 H 1.09003 * 109.62997 * 294.85953 * 18 17 6 44 44 H 1.09003 * 109.42733 * 174.72558 * 18 17 6 45 45 H 0.97003 * 120.00313 * 95.07509 * 21 19 18 46 46 H 0.97002 * 119.99719 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 0.8423 5 6 1.6351 2.1280 -1.3088 6 7 2.2416 3.4656 -1.3494 7 6 1.4817 4.5579 -1.5638 8 8 0.2935 4.4361 -1.7986 9 6 2.0841 5.8908 -1.5085 10 7 3.3186 6.2678 -2.0193 11 1 3.9504 5.6968 -2.4836 12 6 3.4707 7.5811 -1.7491 13 8 4.5434 8.3326 -2.0849 14 7 2.4092 8.0114 -1.1022 15 6 1.5453 7.0105 -0.9383 16 6 0.2091 7.0975 -0.2467 17 6 3.6931 3.5893 -1.1579 18 6 4.0741 2.8879 0.1548 19 6 3.5656 1.4449 0.1217 20 1 3.9989 0.9266 -0.7338 21 7 3.9577 0.7608 1.3563 22 6 5.1962 0.1849 1.4564 23 1 5.8836 0.2347 0.6249 24 6 5.5676 -0.4638 2.6260 25 7 6.7580 -1.0169 2.7223 26 14 4.3783 -0.5506 4.0639 27 1 3.5450 -1.7738 3.9439 28 1 5.1426 -0.5952 5.3363 29 1 3.5020 0.6482 4.0546 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.5497 2.2174 -1.3539 36 1 1.9909 1.5396 -2.1547 37 1 5.2402 8.3452 -1.4145 38 1 0.3340 6.8781 0.8137 39 1 -0.1963 8.1023 -0.3648 40 1 -0.4765 6.3748 -0.6890 41 1 4.2132 3.1177 -1.9917 42 1 3.9660 4.6431 -1.1033 43 1 3.6220 3.4138 0.9957 44 1 5.1586 2.8890 0.2650 45 1 3.3402 0.7156 2.1030 46 1 7.0177 -1.4698 3.5398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037862519.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:49 Heat of formation + Delta-G solvation = 1.620245 kcal Electronic energy + Delta-G solvation = -28410.708942 eV Core-core repulsion = 24530.270269 eV Total energy + Delta-G solvation = -3880.438672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.61338 -40.08981 -38.11365 -37.58399 -35.16699 -34.05058 -33.43220 -31.89200 -31.07501 -30.04807 -29.12206 -27.36713 -25.22511 -24.18395 -23.19445 -22.24822 -21.50979 -20.95605 -20.11378 -19.85525 -18.85794 -17.80250 -17.46322 -17.01035 -16.30876 -15.69392 -15.35646 -15.01646 -14.51246 -14.26212 -14.22031 -13.87849 -13.54351 -13.50425 -13.37028 -13.00785 -12.90320 -12.77829 -12.66486 -12.45022 -12.20624 -12.08945 -11.95655 -11.52358 -11.14281 -11.12837 -10.91831 -10.60889 -10.55111 -10.42550 -10.29958 -10.26151 -10.03239 -9.85471 -9.67302 -9.02584 -8.82184 -8.54526 -7.37643 -5.86975 -3.23027 1.00094 2.12445 2.32159 2.67632 3.06817 3.30234 3.33332 3.39139 3.56985 4.28508 4.50227 4.61026 4.68859 4.86592 4.91279 4.98636 5.05768 5.19916 5.26806 5.35521 5.42827 5.47357 5.48478 5.59267 5.67279 5.72507 5.76810 5.78729 5.88723 5.92026 5.96067 6.12568 6.14225 6.21193 6.24272 6.29937 6.36658 6.42505 6.58866 6.67215 6.81351 7.16491 7.25102 7.53549 7.87642 7.92591 8.31988 9.09902 9.82738 10.02200 11.31157 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.003794 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.015534 B = 7378.366515 C = 8440.145208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.109 4.109 4 H 0.071 0.929 5 C 0.121 3.879 6 N -0.600 5.600 7 C 0.596 3.404 8 O -0.526 6.526 9 C -0.070 4.070 10 N -0.553 5.553 11 H 0.425 0.575 12 C 0.404 3.596 13 O -0.442 6.442 14 N -0.485 5.485 15 C 0.101 3.899 16 C -0.082 4.082 17 C 0.095 3.905 18 C -0.149 4.149 19 C 0.189 3.811 20 H 0.058 0.942 21 N -0.744 5.744 22 C -0.246 4.246 23 H 0.090 0.910 24 C 0.008 3.992 25 N -0.932 5.932 26 Si 0.881 3.119 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.408 0.592 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.362 0.638 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.636 12.868 -9.328 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.129 4.129 4 H 0.089 0.911 5 C -0.001 4.001 6 N -0.332 5.332 7 C 0.383 3.617 8 O -0.402 6.402 9 C -0.185 4.185 10 N -0.174 5.174 11 H 0.267 0.733 12 C 0.103 3.897 13 O -0.243 6.243 14 N -0.216 5.216 15 C -0.033 4.033 16 C -0.139 4.139 17 C -0.029 4.029 18 C -0.190 4.190 19 C 0.079 3.921 20 H 0.075 0.925 21 N -0.386 5.386 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.188 4.188 25 N -0.580 5.580 26 Si 0.711 3.289 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.266 0.734 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.195 0.805 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.355 13.656 -9.750 19.211 hybrid contribution 0.572 -1.127 1.026 1.628 sum -8.783 12.528 -8.724 17.613 Atomic orbital electron populations 1.21861 0.96495 1.01306 1.01523 1.21457 0.94653 0.95478 1.03500 1.21850 0.97583 0.96453 0.97037 0.91058 1.21806 0.99668 0.80749 0.97872 1.48132 1.08374 1.06789 1.69913 1.16766 0.85924 0.81856 0.77154 1.90832 1.14706 1.85568 1.49138 1.20684 0.88916 0.96979 1.11921 1.44106 1.17110 1.10346 1.45848 0.73315 1.20169 0.91068 0.79780 0.98691 1.84829 1.27282 1.65859 1.46363 1.70249 1.02075 1.30700 1.18570 1.20815 0.97043 0.86428 0.99008 1.20319 0.90091 1.03948 0.99571 1.22221 0.79580 1.01071 1.00006 1.22716 1.02636 0.98936 0.94759 1.20147 0.90719 0.90421 0.90826 0.92451 1.42766 1.16670 1.66171 1.12950 1.19027 0.90668 1.27332 1.00512 0.89248 1.24649 0.96393 1.00099 0.97655 1.69692 1.19229 1.41344 1.27697 0.86609 0.80958 0.77872 0.83424 1.20958 1.21747 1.20357 0.92993 0.92870 0.92959 0.91855 0.90430 0.88643 0.91120 0.73414 0.90584 0.90427 0.89264 0.90844 0.90853 0.92060 0.90060 0.80537 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.67 37.16 0.36 -1.47 16 2 C -0.11 -1.57 5.31 -26.73 -0.14 -1.72 16 3 C -0.11 -1.55 1.93 -90.50 -0.17 -1.72 16 4 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 5 C 0.12 1.52 5.31 -3.71 -0.02 1.50 16 6 N -0.60 -7.42 2.97 -174.14 -0.52 -7.94 16 7 C 0.60 8.07 7.43 -12.99 -0.10 7.98 16 8 O -0.53 -8.34 15.10 5.16 0.08 -8.26 16 9 C -0.07 -0.87 6.10 -81.98 -0.50 -1.37 16 10 N -0.55 -5.41 4.77 -10.90 -0.05 -5.46 16 11 H 0.42 3.06 7.45 -40.82 -0.30 2.75 16 12 C 0.40 4.33 9.43 -89.59 -0.84 3.49 16 13 O -0.44 -3.53 13.62 -17.34 -0.24 -3.76 16 14 N -0.49 -6.35 11.22 -10.83 -0.12 -6.47 16 15 C 0.10 1.30 7.13 -82.54 -0.59 0.72 16 16 C -0.08 -0.90 10.23 36.01 0.37 -0.53 16 17 C 0.09 1.06 5.87 -3.48 -0.02 1.04 16 18 C -0.15 -2.20 5.67 -26.39 -0.15 -2.35 16 19 C 0.19 3.15 2.19 -67.90 -0.15 3.00 16 20 H 0.06 1.00 8.08 -51.92 -0.42 0.58 16 21 N -0.74 -15.90 4.14 -53.39 -0.22 -16.12 16 22 C -0.25 -6.40 10.41 -15.06 -0.16 -6.55 16 23 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 24 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 25 N -0.93 -28.08 13.97 55.49 0.78 -27.30 16 26 Si 0.88 21.21 27.73 -169.99 -4.71 16.50 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.58 6.70 -51.93 -0.35 0.23 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.28 7.22 -51.93 -0.37 0.90 16 35 H 0.10 1.23 5.74 -51.93 -0.30 0.93 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.41 1.17 9.06 45.56 0.41 1.58 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 1.04 6.72 -51.93 -0.35 0.69 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.71 4.28 -51.93 -0.22 0.49 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.36 7.82 5.37 -40.82 -0.22 7.60 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -33.42 364.84 -7.66 -41.08 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.94 Total: 10.10 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.21 Total: 2.14 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: -0.14 Total: -63.30 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.16 Total: -12.03 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.71 Total: 16.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.42 -7.66 -41.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037862519.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.703 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds