Wall clock time and date at job start Tue Mar 31 2020 12:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47223 * 2 1 4 4 H 1.08999 * 109.50181 * 55.06194 * 3 2 1 5 5 C 1.53195 * 109.49698 * 294.99630 * 3 2 1 6 6 N 1.46922 * 108.77394 * 185.41268 * 5 3 2 7 7 C 1.34777 * 120.63277 * 233.58545 * 6 5 3 8 8 O 1.21734 * 119.99443 * 355.99623 * 7 6 5 9 9 C 1.46378 * 119.99914 * 175.72296 * 7 6 5 10 10 N 1.38810 * 126.82773 * 41.09921 * 9 7 6 11 11 H 0.96997 * 126.54658 * 0.02562 * 10 9 7 12 12 C 1.34945 * 106.91082 * 179.89659 * 10 9 7 13 13 O 1.35214 * 125.49190 * 180.15551 * 12 10 9 14 14 N 1.31536 * 109.01669 * 0.37464 * 12 10 9 15 15 C 1.33222 * 109.76033 * 359.76085 * 14 12 10 16 16 C 1.50703 * 126.02000 * 180.02562 * 15 14 12 17 17 C 1.46933 * 118.73972 * 53.86694 * 6 5 3 18 18 C 1.53631 * 108.53833 * 306.09155 * 17 6 5 19 19 C 1.53030 * 109.24481 * 54.85484 * 18 17 6 20 20 H 1.09010 * 109.46220 * 58.52925 * 19 18 17 21 21 N 1.46491 * 109.46132 * 178.49030 * 19 18 17 22 22 C 1.36941 * 120.00248 * 275.07047 * 21 19 18 23 23 H 1.07997 * 119.99828 * 359.97438 * 22 21 19 24 24 C 1.38815 * 120.00398 * 180.02562 * 22 21 19 25 25 N 1.31617 * 120.00122 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 119.99638 * 359.97438 * 24 22 21 27 27 H 1.48495 * 109.47401 * 90.00652 * 26 24 22 28 28 H 1.48503 * 109.46830 * 210.00353 * 26 24 22 29 29 H 1.48499 * 109.47353 * 330.00117 * 26 24 22 30 30 H 1.09002 * 109.47343 * 300.00679 * 1 2 3 31 31 H 1.09004 * 109.47344 * 59.99951 * 1 2 3 32 32 H 1.08997 * 109.47479 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47200 * 239.99587 * 2 1 3 34 34 H 1.09001 * 109.47091 * 119.99579 * 2 1 3 35 35 H 1.09001 * 109.58224 * 65.62964 * 5 3 2 36 36 H 1.09003 * 109.58510 * 305.20097 * 5 3 2 37 37 H 0.96703 * 113.99836 * 270.27116 * 13 12 10 38 38 H 1.09002 * 109.46948 * 269.95645 * 16 15 14 39 39 H 1.08997 * 109.46628 * 29.96166 * 16 15 14 40 40 H 1.08995 * 109.47133 * 149.95730 * 16 15 14 41 41 H 1.09001 * 109.58857 * 65.92055 * 17 6 5 42 42 H 1.08993 * 109.58686 * 186.35045 * 17 6 5 43 43 H 1.09003 * 109.62997 * 294.85953 * 18 17 6 44 44 H 1.09003 * 109.42733 * 174.72558 * 18 17 6 45 45 H 0.97003 * 120.00313 * 95.07509 * 21 19 18 46 46 H 0.97002 * 119.99719 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 0.8423 5 6 1.6351 2.1280 -1.3088 6 7 2.2416 3.4656 -1.3494 7 6 1.4817 4.5579 -1.5638 8 8 0.2935 4.4361 -1.7986 9 6 2.0841 5.8908 -1.5085 10 7 3.3186 6.2678 -2.0193 11 1 3.9504 5.6968 -2.4836 12 6 3.4707 7.5811 -1.7491 13 8 4.5434 8.3326 -2.0849 14 7 2.4092 8.0114 -1.1022 15 6 1.5453 7.0105 -0.9383 16 6 0.2091 7.0975 -0.2467 17 6 3.6931 3.5893 -1.1579 18 6 4.0741 2.8879 0.1548 19 6 3.5656 1.4449 0.1217 20 1 3.9989 0.9266 -0.7338 21 7 3.9577 0.7608 1.3563 22 6 5.1962 0.1849 1.4564 23 1 5.8836 0.2347 0.6249 24 6 5.5676 -0.4638 2.6260 25 7 6.7580 -1.0169 2.7223 26 14 4.3783 -0.5506 4.0639 27 1 3.5450 -1.7738 3.9439 28 1 5.1426 -0.5952 5.3363 29 1 3.5020 0.6482 4.0546 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.5497 2.2174 -1.3539 36 1 1.9909 1.5396 -2.1547 37 1 5.2402 8.3452 -1.4145 38 1 0.3340 6.8781 0.8137 39 1 -0.1963 8.1023 -0.3648 40 1 -0.4765 6.3748 -0.6890 41 1 4.2132 3.1177 -1.9917 42 1 3.9660 4.6431 -1.1033 43 1 3.6220 3.4138 0.9957 44 1 5.1586 2.8890 0.2650 45 1 3.3402 0.7156 2.1030 46 1 7.0177 -1.4698 3.5398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037862519.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:48 Heat of formation + Delta-G solvation = -24.829774 kcal Electronic energy + Delta-G solvation = -28411.855900 eV Core-core repulsion = 24530.270269 eV Total energy + Delta-G solvation = -3881.585631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.47712 -41.16133 -39.24191 -38.35051 -36.45142 -35.46506 -34.31518 -33.63257 -31.98024 -31.56333 -30.18831 -28.36712 -26.53706 -25.29267 -24.53331 -23.37574 -22.49177 -22.19390 -21.26184 -20.82955 -19.81974 -19.42869 -18.52833 -17.93040 -17.31808 -16.79690 -16.56922 -16.27296 -15.99448 -15.46289 -15.26835 -15.06442 -14.75747 -14.61463 -14.51530 -14.32829 -14.01067 -13.93527 -13.71030 -13.43050 -13.32989 -13.15126 -12.96560 -12.91400 -12.72026 -12.56236 -12.20809 -12.14079 -11.85094 -11.64881 -11.55368 -11.50663 -11.18238 -11.13653 -11.07321 -10.87121 -9.87250 -9.45444 -9.27668 -8.00713 -5.32388 0.12727 1.30853 1.38100 1.39098 1.42895 1.46215 1.68852 2.11739 2.48699 2.81087 3.31057 3.37995 3.51645 3.67780 3.82052 3.88691 3.93044 4.02148 4.12093 4.23328 4.38262 4.39638 4.50707 4.56681 4.64836 4.69966 4.76362 4.77782 4.81172 4.89700 4.92801 4.98946 5.01142 5.13130 5.26878 5.29914 5.40775 5.41939 5.46719 5.60009 5.75407 5.79746 6.16833 6.23594 6.61561 6.67903 6.90223 7.09904 7.86914 8.04472 9.20783 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.003794 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.015534 B = 7378.366515 C = 8440.145208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.097 4.097 4 H 0.063 0.937 5 C 0.126 3.874 6 N -0.597 5.597 7 C 0.600 3.400 8 O -0.552 6.552 9 C -0.085 4.085 10 N -0.541 5.541 11 H 0.437 0.563 12 C 0.418 3.582 13 O -0.442 6.442 14 N -0.516 5.516 15 C 0.089 3.911 16 C -0.080 4.080 17 C 0.104 3.896 18 C -0.141 4.141 19 C 0.182 3.818 20 H 0.053 0.947 21 N -0.747 5.747 22 C -0.218 4.218 23 H 0.063 0.937 24 C -0.059 4.059 25 N -0.984 5.984 26 Si 0.943 3.057 27 H -0.280 1.280 28 H -0.301 1.301 29 H -0.257 1.257 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.432 0.568 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.362 0.638 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.752 14.173 -10.270 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.117 4.117 4 H 0.082 0.918 5 C 0.004 3.996 6 N -0.329 5.329 7 C 0.387 3.613 8 O -0.430 6.430 9 C -0.200 4.200 10 N -0.163 5.163 11 H 0.282 0.718 12 C 0.116 3.884 13 O -0.247 6.247 14 N -0.247 5.247 15 C -0.045 4.045 16 C -0.137 4.137 17 C -0.019 4.019 18 C -0.182 4.182 19 C 0.074 3.926 20 H 0.071 0.929 21 N -0.389 5.389 22 C -0.349 4.349 23 H 0.081 0.919 24 C -0.251 4.251 25 N -0.635 5.635 26 Si 0.772 3.228 27 H -0.206 1.206 28 H -0.228 1.228 29 H -0.182 1.182 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.294 0.706 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.195 0.805 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.477 14.991 -10.725 21.202 hybrid contribution 0.989 -1.446 1.205 2.126 sum -9.488 13.545 -9.520 19.082 Atomic orbital electron populations 1.21806 0.94607 1.02071 1.02088 1.21417 0.96309 0.94907 1.02351 1.21709 0.95247 0.96888 0.97905 0.91838 1.21764 0.99844 0.80829 0.97180 1.48135 1.08684 1.06561 1.69500 1.16848 0.85560 0.82259 0.76589 1.90818 1.15829 1.85965 1.50407 1.20485 0.89958 0.96405 1.13129 1.43959 1.16526 1.10272 1.45551 0.71809 1.20234 0.91172 0.79958 0.97030 1.84803 1.27216 1.65195 1.47455 1.70242 1.03056 1.31284 1.20166 1.21123 0.97563 0.86658 0.99132 1.20325 0.89415 1.04213 0.99775 1.22219 0.79067 1.02035 0.98612 1.22503 1.01457 0.97598 0.96628 1.20404 0.92690 0.90974 0.88541 0.92906 1.42790 1.15016 1.66433 1.14645 1.19003 0.91518 1.25308 0.99055 0.91873 1.25339 0.98023 1.01094 1.00624 1.69857 1.21589 1.43683 1.28334 0.85584 0.78989 0.78614 0.79614 1.20634 1.22815 1.18184 0.93122 0.91589 0.92151 0.91449 0.93119 0.88526 0.89502 0.70589 0.89858 0.89568 0.90113 0.88550 0.88977 0.93044 0.91518 0.80493 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.67 71.98 0.70 -2.50 16 2 C -0.11 -2.95 5.31 30.59 0.16 -2.79 16 3 C -0.10 -2.60 1.93 -10.71 -0.02 -2.62 16 4 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 5 C 0.13 2.84 5.31 86.36 0.46 3.30 16 6 N -0.60 -13.33 2.97 -823.06 -2.44 -15.77 16 7 C 0.60 15.05 7.43 86.36 0.64 15.69 16 8 O -0.55 -16.67 15.10 -4.46 -0.07 -16.74 16 9 C -0.08 -1.93 6.10 39.80 0.24 -1.69 16 10 N -0.54 -9.15 4.77 -300.13 -1.43 -10.58 16 11 H 0.44 4.88 7.45 -92.71 -0.69 4.19 16 12 C 0.42 7.94 9.43 179.99 1.70 9.63 16 13 O -0.44 -5.76 13.62 -84.96 -1.16 -6.91 16 14 N -0.52 -12.60 11.22 -301.65 -3.38 -15.99 16 15 C 0.09 2.17 7.13 41.99 0.30 2.47 16 16 C -0.08 -1.67 10.23 71.24 0.73 -0.94 16 17 C 0.10 2.04 5.87 86.51 0.51 2.55 16 18 C -0.14 -3.95 5.67 30.82 0.17 -3.77 16 19 C 0.18 5.87 2.19 45.02 0.10 5.97 16 20 H 0.05 1.77 8.08 -2.38 -0.02 1.75 16 21 N -0.75 -31.51 4.14 -322.82 -1.34 -32.85 16 22 C -0.22 -11.45 10.41 84.03 0.87 -10.57 16 23 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 24 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 25 N -0.98 -60.85 13.97 21.65 0.30 -60.55 16 26 Si 0.94 44.16 27.73 68.60 1.90 46.06 16 27 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 28 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 29 H -0.26 -10.98 6.52 99.48 0.65 -10.33 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.26 6.70 -2.39 -0.02 1.25 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.05 1.62 7.22 -2.39 -0.02 1.60 16 35 H 0.10 2.25 5.74 -2.39 -0.01 2.24 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.43 1.09 9.06 -74.05 -0.67 0.42 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.08 1.82 6.72 -2.39 -0.02 1.81 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.09 1.50 4.28 -2.39 -0.01 1.49 16 43 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.36 15.26 5.37 -92.71 -0.50 14.76 16 46 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -73.03 364.84 -1.46 -74.50 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: -0.88 Total: 26.98 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 7.03 Total: 11.85 kcal Atomic # 7 Polarization: -127.45 SS G_CDS: -8.29 Total: -135.74 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -1.22 Total: -23.65 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.90 Total: 46.06 kcal Total: -73.03 -1.46 -74.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037862519.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.667 kcal (2) G-P(sol) polarization free energy of solvation -73.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds