Wall clock time and date at job start Tue Mar 31 2020 12:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.46746 * 2 1 4 4 H 1.09003 * 109.49287 * 55.06734 * 3 2 1 5 5 C 1.53195 * 109.49746 * 295.00381 * 3 2 1 6 6 N 1.46924 * 108.77129 * 185.38264 * 5 3 2 7 7 C 1.34786 * 120.62682 * 233.60829 * 6 5 3 8 8 O 1.21735 * 119.99590 * 356.03669 * 7 6 5 9 9 C 1.46377 * 119.99914 * 176.03917 * 7 6 5 10 10 N 1.38816 * 126.82837 * 40.65259 * 9 7 6 11 11 H 0.97005 * 126.53860 * 359.95858 * 10 9 7 12 12 C 1.34945 * 106.91318 * 179.97438 * 10 9 7 13 13 O 1.35203 * 125.49450 * 180.02562 * 12 10 9 14 14 N 1.31535 * 109.01389 * 359.97438 * 12 10 9 15 15 C 1.33225 * 109.76077 * 359.75450 * 14 12 10 16 16 C 1.50704 * 126.01776 * 180.25404 * 15 14 12 17 17 C 1.46924 * 118.74359 * 53.60703 * 6 5 3 18 18 C 1.53191 * 108.77588 * 306.39239 * 17 6 5 19 19 C 1.53039 * 109.31452 * 54.63077 * 18 17 6 20 20 H 1.08997 * 109.46167 * 178.61378 * 19 18 17 21 21 N 1.46500 * 109.44575 * 58.64685 * 19 18 17 22 22 C 1.36938 * 119.99774 * 84.94268 * 21 19 18 23 23 H 1.08001 * 120.00330 * 359.97438 * 22 21 19 24 24 C 1.38822 * 120.00112 * 179.97438 * 22 21 19 25 25 N 1.31613 * 119.99547 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99811 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47255 * 60.00163 * 26 24 22 28 28 H 1.48503 * 109.46671 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47135 * 299.99511 * 26 24 22 30 30 H 1.09000 * 109.46938 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47281 * 299.99412 * 1 2 3 32 32 H 1.08991 * 109.47723 * 60.00004 * 1 2 3 33 33 H 1.09003 * 109.47281 * 240.00588 * 2 1 3 34 34 H 1.08991 * 109.47723 * 119.99995 * 2 1 3 35 35 H 1.08993 * 109.58660 * 305.16636 * 5 3 2 36 36 H 1.08998 * 109.58317 * 65.59252 * 5 3 2 37 37 H 0.96699 * 113.99905 * 89.99443 * 13 12 10 38 38 H 1.09003 * 109.47126 * 270.17523 * 16 15 14 39 39 H 1.09001 * 109.47245 * 30.17046 * 16 15 14 40 40 H 1.08994 * 109.47292 * 150.17490 * 16 15 14 41 41 H 1.09001 * 109.58678 * 186.60338 * 17 6 5 42 42 H 1.08999 * 109.70193 * 66.24644 * 17 6 5 43 43 H 1.09005 * 109.49667 * 294.68271 * 18 17 6 44 44 H 1.08998 * 109.49959 * 174.58257 * 18 17 6 45 45 H 0.97001 * 120.00442 * 264.93822 * 21 19 18 46 46 H 0.97005 * 119.99746 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6064 1.9817 0.8424 5 6 1.6348 2.1281 -1.3088 6 7 2.2406 3.4661 -1.3489 7 6 1.4800 4.5581 -1.5628 8 8 0.2916 4.4357 -1.7966 9 6 2.0830 5.8910 -1.5140 10 7 3.3190 6.2643 -2.0240 11 1 3.9519 5.6898 -2.4826 12 6 3.4719 7.5787 -1.7597 13 8 4.5471 8.3269 -2.0947 14 7 2.4059 8.0151 -1.1247 15 6 1.5380 7.0173 -0.9630 16 6 0.1940 7.1124 -0.2880 17 6 3.6911 3.5911 -1.1514 18 6 4.0732 2.8892 0.1555 19 6 3.5654 1.4458 0.1220 20 1 3.8574 0.9368 1.0406 21 7 4.1484 0.7503 -1.0279 22 6 5.3868 0.1751 -0.9244 23 1 5.9339 0.2345 0.0049 24 6 5.9391 -0.4845 -2.0139 25 7 5.2722 -0.5574 -3.1462 26 14 7.6288 -1.2685 -1.8728 27 1 7.6091 -2.2978 -0.8026 28 1 7.9887 -1.9046 -3.1655 29 1 8.6319 -0.2258 -1.5385 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.9910 1.5403 -2.1546 36 1 0.5494 2.2169 -1.3540 37 1 4.4805 8.7439 -2.9646 38 1 0.3064 6.9052 0.7762 39 1 -0.2097 8.1160 -0.4221 40 1 -0.4868 6.3849 -0.7299 41 1 3.9624 4.6452 -1.0929 42 1 4.2170 3.1241 -1.9842 43 1 3.6205 3.4146 0.9965 44 1 5.1575 2.8909 0.2659 45 1 3.6573 0.6971 -1.8627 46 1 5.6579 -1.0187 -3.9074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037862520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:52 Heat of formation + Delta-G solvation = -0.965519 kcal Electronic energy + Delta-G solvation = -28738.922463 eV Core-core repulsion = 24858.371663 eV Total energy + Delta-G solvation = -3880.550800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.47011 -39.92922 -38.00101 -37.45308 -34.77736 -33.83607 -33.26827 -31.78880 -30.93475 -29.53298 -28.70280 -27.24654 -25.03144 -23.97838 -23.62349 -22.61876 -21.39529 -20.86351 -19.93758 -19.11103 -18.36142 -17.53372 -17.37052 -16.35088 -16.15150 -16.03974 -15.00600 -14.63514 -14.54118 -14.18885 -14.05969 -13.81705 -13.40600 -13.35334 -13.25340 -13.01918 -12.77660 -12.62856 -12.53025 -12.32588 -12.07065 -11.82725 -11.49708 -11.18532 -11.07076 -10.89191 -10.84319 -10.46234 -10.37090 -10.34295 -10.26649 -10.11364 -9.88685 -9.80839 -9.62965 -9.00436 -8.58601 -8.30674 -7.06820 -5.87329 -3.16062 1.18363 2.11492 2.62565 2.92445 3.24095 3.35942 3.41694 3.42249 3.70234 4.49135 4.50223 4.74367 4.90467 5.02987 5.17738 5.23821 5.37321 5.41130 5.50201 5.50971 5.63606 5.66811 5.69895 5.73508 5.80580 5.84775 5.88241 5.94774 6.05022 6.08214 6.24937 6.29027 6.32231 6.34907 6.45432 6.49771 6.52933 6.60936 6.67710 6.83976 6.91466 7.35152 7.47586 7.60790 7.66294 8.15658 8.31080 9.42958 9.98623 10.33918 11.34824 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012449 B = 0.004277 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.691320 B = 6544.368135 C = 8196.474288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.068 0.932 5 C 0.120 3.880 6 N -0.593 5.593 7 C 0.592 3.408 8 O -0.532 6.532 9 C -0.064 4.064 10 N -0.551 5.551 11 H 0.427 0.573 12 C 0.400 3.600 13 O -0.441 6.441 14 N -0.486 5.486 15 C 0.096 3.904 16 C -0.080 4.080 17 C 0.102 3.898 18 C -0.148 4.148 19 C 0.178 3.822 20 H 0.053 0.947 21 N -0.718 5.718 22 C -0.240 4.240 23 H 0.069 0.931 24 C -0.010 4.010 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.405 0.595 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.050 0.950 44 H 0.075 0.925 45 H 0.384 0.616 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.848 12.298 3.263 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.086 0.914 5 C -0.002 4.002 6 N -0.325 5.325 7 C 0.379 3.621 8 O -0.409 6.409 9 C -0.179 4.179 10 N -0.172 5.172 11 H 0.270 0.730 12 C 0.099 3.901 13 O -0.242 6.242 14 N -0.217 5.217 15 C -0.038 4.038 16 C -0.137 4.137 17 C -0.020 4.020 18 C -0.189 4.189 19 C 0.068 3.932 20 H 0.071 0.929 21 N -0.361 5.361 22 C -0.371 4.371 23 H 0.087 0.913 24 C -0.206 4.206 25 N -0.581 5.581 26 Si 0.735 3.265 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.262 0.738 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.219 0.781 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.117 12.828 3.939 15.189 hybrid contribution 1.726 -1.289 -1.281 2.506 sum -5.391 11.538 2.657 13.010 Atomic orbital electron populations 1.21855 0.96708 1.01125 1.01401 1.21414 0.94359 0.95558 1.03444 1.21763 0.97343 0.96286 0.96945 0.91387 1.21769 0.98927 0.80896 0.98605 1.48102 1.08568 1.06624 1.69170 1.16772 0.85948 0.81878 0.77502 1.90816 1.14705 1.85560 1.49838 1.20781 0.87233 0.97094 1.12806 1.44176 1.16521 1.10992 1.45506 0.73041 1.20158 0.89440 0.80556 0.99972 1.84852 1.34108 1.63913 1.41283 1.70215 1.00592 1.30893 1.20031 1.20794 0.96767 0.86628 0.99643 1.20296 0.90005 1.03805 0.99617 1.21984 0.79302 0.99941 1.00812 1.22504 1.01903 0.99368 0.95125 1.20227 0.89792 0.90459 0.92745 0.92917 1.42467 1.18996 1.64101 1.10502 1.19176 0.93528 1.27290 0.97104 0.91301 1.24693 0.98531 1.01351 0.96005 1.69633 1.38147 1.47999 1.02278 0.86320 0.84285 0.79229 0.76632 1.21289 1.21778 1.21391 0.93114 0.93302 0.92746 0.90469 0.91946 0.90439 0.89189 0.73755 0.90795 0.90586 0.89198 0.91614 0.89388 0.93116 0.90673 0.78129 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.67 37.16 0.36 -1.61 16 2 C -0.11 -1.66 5.19 -26.73 -0.14 -1.80 16 3 C -0.10 -1.59 2.14 -90.49 -0.19 -1.79 16 4 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 5 C 0.12 1.90 5.02 -3.71 -0.02 1.88 16 6 N -0.59 -9.12 2.97 -174.42 -0.52 -9.63 16 7 C 0.59 9.30 7.44 -12.98 -0.10 9.20 16 8 O -0.53 -9.41 15.07 5.16 0.08 -9.34 16 9 C -0.06 -0.90 6.10 -81.98 -0.50 -1.40 16 10 N -0.55 -6.56 4.77 -10.91 -0.05 -6.61 16 11 H 0.43 4.38 7.44 -40.82 -0.30 4.07 16 12 C 0.40 4.86 9.43 -89.59 -0.84 4.01 16 13 O -0.44 -4.11 13.62 -17.30 -0.24 -4.35 16 14 N -0.49 -6.84 11.22 -10.83 -0.12 -6.97 16 15 C 0.10 1.34 7.13 -82.54 -0.59 0.75 16 16 C -0.08 -0.93 10.23 36.01 0.37 -0.56 16 17 C 0.10 1.54 5.56 -3.71 -0.02 1.52 16 18 C -0.15 -2.36 5.78 -26.61 -0.15 -2.51 16 19 C 0.18 3.15 2.53 -67.89 -0.17 2.98 16 20 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 21 N -0.72 -15.68 3.72 -53.38 -0.20 -15.87 16 22 C -0.24 -6.02 9.93 -15.06 -0.15 -6.17 16 23 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 24 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 25 N -0.93 -26.17 13.06 55.49 0.72 -25.45 16 26 Si 0.90 21.22 29.55 -169.99 -5.02 16.19 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 29 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.70 6.70 -51.93 -0.35 0.35 16 33 H 0.08 1.37 7.70 -51.93 -0.40 0.97 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.36 6.64 -51.93 -0.34 1.02 16 36 H 0.09 1.41 5.74 -51.93 -0.30 1.11 16 37 H 0.40 1.58 9.06 45.56 0.41 1.99 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 1.11 6.69 -51.93 -0.35 0.76 16 41 H 0.07 0.88 4.30 -51.93 -0.22 0.66 16 42 H 0.09 1.51 7.74 -51.93 -0.40 1.11 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.38 8.98 5.94 -40.82 -0.24 8.74 16 46 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -30.88 364.24 -7.95 -38.82 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -5.84 Total: 13.56 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -2.24 Total: 4.15 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -0.17 Total: -64.53 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.16 Total: -13.69 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.88 -7.95 -38.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037862520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.859 kcal (2) G-P(sol) polarization free energy of solvation -30.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds