Wall clock time and date at job start Tue Mar 31 2020 12:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.46746 * 2 1 4 4 H 1.09003 * 109.49287 * 55.06734 * 3 2 1 5 5 C 1.53195 * 109.49746 * 295.00381 * 3 2 1 6 6 N 1.46924 * 108.77129 * 185.38264 * 5 3 2 7 7 C 1.34786 * 120.62682 * 233.60829 * 6 5 3 8 8 O 1.21735 * 119.99590 * 356.03669 * 7 6 5 9 9 C 1.46377 * 119.99914 * 176.03917 * 7 6 5 10 10 N 1.38816 * 126.82837 * 40.65259 * 9 7 6 11 11 H 0.97005 * 126.53860 * 359.95858 * 10 9 7 12 12 C 1.34945 * 106.91318 * 179.97438 * 10 9 7 13 13 O 1.35203 * 125.49450 * 180.02562 * 12 10 9 14 14 N 1.31535 * 109.01389 * 359.97438 * 12 10 9 15 15 C 1.33225 * 109.76077 * 359.75450 * 14 12 10 16 16 C 1.50704 * 126.01776 * 180.25404 * 15 14 12 17 17 C 1.46924 * 118.74359 * 53.60703 * 6 5 3 18 18 C 1.53191 * 108.77588 * 306.39239 * 17 6 5 19 19 C 1.53039 * 109.31452 * 54.63077 * 18 17 6 20 20 H 1.08997 * 109.46167 * 178.61378 * 19 18 17 21 21 N 1.46500 * 109.44575 * 58.64685 * 19 18 17 22 22 C 1.36938 * 119.99774 * 84.94268 * 21 19 18 23 23 H 1.08001 * 120.00330 * 359.97438 * 22 21 19 24 24 C 1.38822 * 120.00112 * 179.97438 * 22 21 19 25 25 N 1.31613 * 119.99547 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99811 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47255 * 60.00163 * 26 24 22 28 28 H 1.48503 * 109.46671 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47135 * 299.99511 * 26 24 22 30 30 H 1.09000 * 109.46938 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47281 * 299.99412 * 1 2 3 32 32 H 1.08991 * 109.47723 * 60.00004 * 1 2 3 33 33 H 1.09003 * 109.47281 * 240.00588 * 2 1 3 34 34 H 1.08991 * 109.47723 * 119.99995 * 2 1 3 35 35 H 1.08993 * 109.58660 * 305.16636 * 5 3 2 36 36 H 1.08998 * 109.58317 * 65.59252 * 5 3 2 37 37 H 0.96699 * 113.99905 * 89.99443 * 13 12 10 38 38 H 1.09003 * 109.47126 * 270.17523 * 16 15 14 39 39 H 1.09001 * 109.47245 * 30.17046 * 16 15 14 40 40 H 1.08994 * 109.47292 * 150.17490 * 16 15 14 41 41 H 1.09001 * 109.58678 * 186.60338 * 17 6 5 42 42 H 1.08999 * 109.70193 * 66.24644 * 17 6 5 43 43 H 1.09005 * 109.49667 * 294.68271 * 18 17 6 44 44 H 1.08998 * 109.49959 * 174.58257 * 18 17 6 45 45 H 0.97001 * 120.00442 * 264.93822 * 21 19 18 46 46 H 0.97005 * 119.99746 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6064 1.9817 0.8424 5 6 1.6348 2.1281 -1.3088 6 7 2.2406 3.4661 -1.3489 7 6 1.4800 4.5581 -1.5628 8 8 0.2916 4.4357 -1.7966 9 6 2.0830 5.8910 -1.5140 10 7 3.3190 6.2643 -2.0240 11 1 3.9519 5.6898 -2.4826 12 6 3.4719 7.5787 -1.7597 13 8 4.5471 8.3269 -2.0947 14 7 2.4059 8.0151 -1.1247 15 6 1.5380 7.0173 -0.9630 16 6 0.1940 7.1124 -0.2880 17 6 3.6911 3.5911 -1.1514 18 6 4.0732 2.8892 0.1555 19 6 3.5654 1.4458 0.1220 20 1 3.8574 0.9368 1.0406 21 7 4.1484 0.7503 -1.0279 22 6 5.3868 0.1751 -0.9244 23 1 5.9339 0.2345 0.0049 24 6 5.9391 -0.4845 -2.0139 25 7 5.2722 -0.5574 -3.1462 26 14 7.6288 -1.2685 -1.8728 27 1 7.6091 -2.2978 -0.8026 28 1 7.9887 -1.9046 -3.1655 29 1 8.6319 -0.2258 -1.5385 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.9910 1.5403 -2.1546 36 1 0.5494 2.2169 -1.3540 37 1 4.4805 8.7439 -2.9646 38 1 0.3064 6.9052 0.7762 39 1 -0.2097 8.1160 -0.4221 40 1 -0.4868 6.3849 -0.7299 41 1 3.9624 4.6452 -1.0929 42 1 4.2170 3.1241 -1.9842 43 1 3.6205 3.4146 0.9965 44 1 5.1575 2.8909 0.2659 45 1 3.6573 0.6971 -1.8627 46 1 5.6579 -1.0187 -3.9074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037862520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:51 Heat of formation + Delta-G solvation = -24.116614 kcal Electronic energy + Delta-G solvation = -28739.926369 eV Core-core repulsion = 24858.371663 eV Total energy + Delta-G solvation = -3881.554706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.47417 -41.19765 -39.24916 -38.35617 -36.10693 -35.40969 -34.28642 -33.43472 -31.93798 -31.07398 -30.02744 -28.35119 -26.35561 -25.43156 -25.18437 -23.65969 -22.48718 -22.13806 -20.93062 -20.29545 -19.55015 -19.22626 -18.64700 -17.41845 -17.28767 -17.15784 -16.61881 -16.00663 -15.90448 -15.61110 -15.32550 -15.01376 -14.82387 -14.56089 -14.48057 -14.17071 -14.07446 -13.76768 -13.59144 -13.39935 -13.11766 -12.96949 -12.91682 -12.82650 -12.65375 -12.42404 -12.23554 -12.15604 -11.85713 -11.60222 -11.48817 -11.44206 -11.15975 -11.15489 -11.03239 -10.80212 -9.79551 -9.43512 -8.93406 -7.89491 -5.15428 0.15675 1.15104 1.49549 1.50523 1.55976 1.59792 1.76613 2.07869 2.59058 2.80368 3.38515 3.44130 3.71666 3.83050 3.85615 3.93749 3.99032 4.05168 4.19850 4.28916 4.43177 4.45355 4.48986 4.56389 4.67506 4.76781 4.81340 4.83008 4.92497 4.94881 5.00436 5.01677 5.14606 5.19591 5.22602 5.25341 5.40447 5.43854 5.49156 5.58402 5.64054 5.72314 6.23714 6.32139 6.60167 6.67089 6.92404 7.40507 8.15678 8.40019 9.33201 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012449 B = 0.004277 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.691320 B = 6544.368135 C = 8196.474288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.092 4.092 4 H 0.087 0.913 5 C 0.126 3.874 6 N -0.593 5.593 7 C 0.597 3.403 8 O -0.555 6.555 9 C -0.086 4.086 10 N -0.546 5.546 11 H 0.434 0.566 12 C 0.417 3.583 13 O -0.441 6.441 14 N -0.510 5.510 15 C 0.095 3.905 16 C -0.078 4.078 17 C 0.112 3.888 18 C -0.141 4.141 19 C 0.173 3.827 20 H 0.048 0.952 21 N -0.722 5.722 22 C -0.228 4.228 23 H 0.073 0.927 24 C -0.068 4.068 25 N -0.966 5.966 26 Si 0.960 3.040 27 H -0.283 1.283 28 H -0.302 1.302 29 H -0.281 1.281 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.431 0.569 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.374 0.626 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.808 13.834 4.589 16.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.112 4.112 4 H 0.105 0.895 5 C 0.004 3.996 6 N -0.324 5.324 7 C 0.385 3.615 8 O -0.433 6.433 9 C -0.201 4.201 10 N -0.167 5.167 11 H 0.277 0.723 12 C 0.116 3.884 13 O -0.246 6.246 14 N -0.242 5.242 15 C -0.039 4.039 16 C -0.136 4.136 17 C -0.011 4.011 18 C -0.182 4.182 19 C 0.064 3.936 20 H 0.066 0.934 21 N -0.363 5.363 22 C -0.360 4.360 23 H 0.091 0.909 24 C -0.260 4.260 25 N -0.618 5.618 26 Si 0.791 3.209 27 H -0.210 1.210 28 H -0.229 1.229 29 H -0.207 1.207 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.293 0.707 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.208 0.792 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.064 14.394 5.288 16.883 hybrid contribution 1.721 -1.655 -1.658 2.907 sum -5.342 12.738 3.631 14.283 Atomic orbital electron populations 1.21790 0.94583 1.01967 1.02046 1.21335 0.96197 0.94969 1.01807 1.21673 0.95598 0.96649 0.97279 0.89515 1.21628 0.99040 0.81029 0.97930 1.48081 1.08594 1.06465 1.69215 1.16912 0.85625 0.82320 0.76687 1.90799 1.15729 1.86001 1.50812 1.20510 0.88437 0.96390 1.14739 1.44075 1.16080 1.11143 1.45398 0.72265 1.20257 0.89171 0.80640 0.98371 1.84817 1.32851 1.63588 1.43309 1.70253 1.01418 1.31171 1.21365 1.21168 0.97332 0.86410 0.99015 1.20339 0.88898 1.04329 0.99999 1.21848 0.78937 1.00854 0.99415 1.22381 1.01437 0.98092 0.96280 1.20427 0.91261 0.91021 0.90878 0.93381 1.42548 1.18138 1.64317 1.11345 1.19507 0.94291 1.25511 0.96727 0.90876 1.25315 1.01541 1.03059 0.96099 1.69780 1.39481 1.49691 1.02800 0.85410 0.81170 0.78446 0.75884 1.20997 1.22888 1.20704 0.92267 0.91721 0.92941 0.93613 0.91998 0.92788 0.88786 0.70710 0.89614 0.89272 0.90127 0.89523 0.91759 0.91070 0.91483 0.79194 0.94380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.67 71.98 0.70 -2.86 16 2 C -0.10 -3.13 5.19 30.60 0.16 -2.98 16 3 C -0.09 -2.75 2.14 -10.71 -0.02 -2.78 16 4 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 5 C 0.13 3.96 5.02 86.36 0.43 4.39 16 6 N -0.59 -17.79 2.97 -823.94 -2.45 -20.24 16 7 C 0.60 18.17 7.44 86.36 0.64 18.81 16 8 O -0.55 -19.27 15.07 -4.46 -0.07 -19.34 16 9 C -0.09 -2.30 6.10 39.80 0.24 -2.05 16 10 N -0.55 -12.00 4.77 -300.14 -1.43 -13.43 16 11 H 0.43 8.20 7.44 -92.70 -0.69 7.51 16 12 C 0.42 9.17 9.43 179.99 1.70 10.87 16 13 O -0.44 -6.98 13.62 -84.84 -1.16 -8.13 16 14 N -0.51 -13.30 11.22 -301.67 -3.39 -16.69 16 15 C 0.09 2.49 7.13 41.99 0.30 2.79 16 16 C -0.08 -1.69 10.23 71.24 0.73 -0.96 16 17 C 0.11 3.28 5.56 86.36 0.48 3.76 16 18 C -0.14 -4.30 5.78 30.67 0.18 -4.12 16 19 C 0.17 6.00 2.53 45.02 0.11 6.11 16 20 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 21 N -0.72 -31.85 3.72 -322.81 -1.20 -33.05 16 22 C -0.23 -11.49 9.93 84.04 0.83 -10.65 16 23 H 0.07 3.57 7.83 -2.91 -0.02 3.54 16 24 C -0.07 -3.62 5.50 84.87 0.47 -3.15 16 25 N -0.97 -55.60 13.06 21.65 0.28 -55.32 16 26 Si 0.96 43.97 29.55 68.60 2.03 46.00 16 27 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 28 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 29 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.29 6.70 -2.39 -0.02 1.27 16 33 H 0.05 1.66 7.70 -2.39 -0.02 1.64 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.97 6.64 -2.39 -0.02 1.95 16 36 H 0.09 2.91 5.74 -2.39 -0.01 2.89 16 37 H 0.43 2.02 9.06 -74.06 -0.67 1.35 16 38 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 1.90 6.69 -2.39 -0.02 1.89 16 41 H 0.09 2.17 4.30 -2.39 -0.01 2.16 16 42 H 0.06 2.22 7.74 -2.39 -0.02 2.20 16 43 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 44 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.37 18.05 5.94 -92.71 -0.55 17.50 16 46 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 Total: -1.00 -65.90 364.24 -1.30 -67.20 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -0.87 Total: 35.81 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 6.95 Total: 17.19 kcal Atomic # 7 Polarization: -130.54 SS G_CDS: -8.19 Total: -138.72 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -1.22 Total: -27.48 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -65.90 -1.30 -67.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037862520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.081 kcal (2) G-P(sol) polarization free energy of solvation -65.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds