Wall clock time and date at job start Tue Mar 31 2020 12:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46950 * 2 1 4 4 H 1.08987 * 109.50114 * 305.06443 * 3 2 1 5 5 C 1.53197 * 109.49384 * 65.16187 * 3 2 1 6 6 N 1.46931 * 108.77015 * 174.58611 * 5 3 2 7 7 C 1.34769 * 120.63033 * 126.37308 * 6 5 3 8 8 O 1.21735 * 120.00470 * 354.37553 * 7 6 5 9 9 C 1.46382 * 120.00213 * 174.38326 * 7 6 5 10 10 N 1.38810 * 126.83196 * 108.32621 * 9 7 6 11 11 H 0.97002 * 126.53764 * 0.02562 * 10 9 7 12 12 C 1.34942 * 106.91555 * 180.02562 * 10 9 7 13 13 O 1.35206 * 125.49188 * 180.02562 * 12 10 9 14 14 N 1.31534 * 109.01411 * 359.97438 * 12 10 9 15 15 C 1.33224 * 109.76415 * 359.72813 * 14 12 10 16 16 C 1.50693 * 126.02472 * 180.30115 * 15 14 12 17 17 C 1.46933 * 118.73730 * 306.38420 * 6 5 3 18 18 C 1.53193 * 108.77098 * 53.61587 * 17 6 5 19 19 C 1.53037 * 109.31222 * 305.35864 * 18 17 6 20 20 H 1.08994 * 109.46254 * 301.36015 * 19 18 17 21 21 N 1.46501 * 109.45668 * 181.38808 * 19 18 17 22 22 C 1.36941 * 120.00017 * 85.00252 * 21 19 18 23 23 H 1.08000 * 119.99597 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00000 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99803 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99788 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47332 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.46755 * 120.00838 * 26 24 22 29 29 H 1.48502 * 109.47314 * 240.00196 * 26 24 22 30 30 H 1.08998 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47674 * 299.99928 * 1 2 3 32 32 H 1.09007 * 109.47096 * 59.99876 * 1 2 3 33 33 H 1.08997 * 109.47152 * 240.00010 * 2 1 3 34 34 H 1.08995 * 109.46729 * 120.00020 * 2 1 3 35 35 H 1.08993 * 109.58472 * 294.36763 * 5 3 2 36 36 H 1.08993 * 109.58762 * 54.65859 * 5 3 2 37 37 H 0.96705 * 113.99987 * 90.00111 * 13 12 10 38 38 H 1.08998 * 109.47309 * 270.16737 * 16 15 14 39 39 H 1.09008 * 109.46927 * 30.16167 * 16 15 14 40 40 H 1.08992 * 109.47415 * 150.16014 * 16 15 14 41 41 H 1.09003 * 109.58814 * 293.82328 * 17 6 5 42 42 H 1.09000 * 109.58284 * 173.40215 * 17 6 5 43 43 H 1.08996 * 109.49733 * 65.31526 * 18 17 6 44 44 H 1.09004 * 109.49382 * 185.37642 * 18 17 6 45 45 H 0.97003 * 119.99805 * 264.99987 * 21 19 18 46 46 H 0.97007 * 119.99263 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9823 -0.8409 5 6 1.6384 2.1267 1.3106 6 7 2.2450 3.4644 1.3507 7 6 1.4856 4.5564 1.5674 8 8 0.2742 4.4529 1.6299 9 6 2.1172 5.8672 1.7272 10 7 2.0944 6.9181 0.8205 11 1 1.6549 6.9253 -0.0442 12 6 2.8004 7.9275 1.3716 13 8 3.0166 9.1355 0.8041 14 7 3.2433 7.5472 2.5503 15 6 2.8417 6.3021 2.8022 16 6 3.1373 5.5109 4.0501 17 6 3.6952 3.5887 1.1500 18 6 4.0736 2.8881 -0.1587 19 6 3.5652 1.4450 -0.1256 20 1 4.0006 0.9261 0.7283 21 7 3.9542 0.7621 -1.3619 22 6 5.1918 0.1852 -1.4652 23 1 5.8810 0.2333 -0.6350 24 6 5.5602 -0.4624 -2.6364 25 7 4.7201 -0.5214 -3.6479 26 14 7.2488 -1.2487 -2.7774 27 1 7.9976 -1.0438 -1.5116 28 1 7.0973 -2.7039 -3.0326 29 1 7.9935 -0.6243 -3.9003 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 0.5532 2.2160 1.3585 36 1 1.9942 1.5364 2.1549 37 1 2.3429 9.7960 1.0163 38 1 4.0675 4.9582 3.9182 39 1 3.2357 6.1907 4.8966 40 1 2.3227 4.8117 4.2386 41 1 4.2208 3.1189 1.9814 42 1 3.9669 4.6427 1.0921 43 1 3.6192 3.4148 -0.9979 44 1 5.1577 2.8899 -0.2720 45 1 3.3350 0.7186 -2.1074 46 1 4.9778 -0.9736 -4.4666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037862521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:55 Heat of formation + Delta-G solvation = -9.691866 kcal Electronic energy + Delta-G solvation = -28292.025819 eV Core-core repulsion = 24411.096617 eV Total energy + Delta-G solvation = -3880.929202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.50268 -40.02065 -37.96330 -37.55184 -34.83983 -33.84220 -33.50721 -31.81732 -31.11825 -29.58277 -28.89901 -27.25002 -25.10258 -23.94832 -23.20564 -22.44566 -21.36113 -20.86207 -20.00874 -19.61944 -18.87947 -17.65020 -17.12461 -16.84552 -16.25108 -15.84519 -15.09336 -14.89669 -14.48465 -14.11217 -13.98095 -13.79078 -13.54644 -13.36401 -13.25936 -13.06649 -12.91828 -12.73398 -12.73169 -12.21501 -12.14569 -11.89943 -11.66171 -11.36057 -10.98367 -10.89908 -10.76954 -10.64408 -10.40780 -10.31381 -10.25056 -10.17406 -10.00466 -9.77382 -9.65630 -8.96085 -8.63086 -8.53697 -7.01432 -5.82202 -3.11111 1.22800 1.92227 2.37779 2.76473 3.04495 3.39331 3.45487 3.47470 3.63532 4.36955 4.53586 4.62274 4.81308 4.97103 5.14968 5.18551 5.29369 5.39112 5.44442 5.48875 5.52920 5.55905 5.60498 5.62784 5.65279 5.70038 5.80924 5.94761 6.05639 6.09510 6.17056 6.25822 6.27406 6.31946 6.37878 6.40979 6.48940 6.60392 6.76675 6.89596 6.98579 7.28473 7.29541 7.55242 7.65348 7.96519 8.35865 9.47702 10.04256 10.38999 11.40212 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013708 B = 0.003546 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.160276 B = 7893.830027 C = 9015.689163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.118 3.882 6 N -0.587 5.587 7 C 0.593 3.407 8 O -0.535 6.535 9 C -0.056 4.056 10 N -0.543 5.543 11 H 0.425 0.575 12 C 0.395 3.605 13 O -0.440 6.440 14 N -0.480 5.480 15 C 0.072 3.928 16 C -0.075 4.075 17 C 0.107 3.893 18 C -0.151 4.151 19 C 0.183 3.817 20 H 0.050 0.950 21 N -0.720 5.720 22 C -0.239 4.239 23 H 0.071 0.929 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.404 0.596 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.384 0.616 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.318 13.128 12.396 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.004 4.004 6 N -0.318 5.318 7 C 0.378 3.622 8 O -0.412 6.412 9 C -0.173 4.173 10 N -0.159 5.159 11 H 0.265 0.735 12 C 0.095 3.905 13 O -0.241 6.241 14 N -0.211 5.211 15 C -0.061 4.061 16 C -0.133 4.133 17 C -0.016 4.016 18 C -0.192 4.192 19 C 0.073 3.927 20 H 0.068 0.932 21 N -0.360 5.360 22 C -0.370 4.370 23 H 0.089 0.911 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.262 0.738 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.218 0.782 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.780 13.303 12.687 19.593 hybrid contribution -0.189 -0.333 -1.541 1.588 sum -6.968 12.970 11.146 18.467 Atomic orbital electron populations 1.21848 0.96779 1.01112 1.01288 1.21451 0.94381 0.95525 1.03613 1.21783 0.97738 0.96374 0.96504 0.91226 1.21865 0.99523 0.80716 0.98291 1.48091 1.08953 1.06429 1.68362 1.16776 0.85875 0.82308 0.77240 1.90848 1.13346 1.86052 1.50943 1.20512 1.11316 0.91564 0.93871 1.43538 1.41334 1.12334 1.18738 0.73518 1.20062 0.96436 0.85078 0.88971 1.84862 1.51562 1.16564 1.71073 1.70166 1.25178 1.13617 1.12114 1.20758 0.97385 0.91584 0.96405 1.20208 1.02517 0.98313 0.92279 1.21926 0.78785 1.01389 0.99456 1.22694 1.02385 0.99261 0.94831 1.20194 0.90704 0.90454 0.91363 0.93201 1.42414 1.16542 1.64409 1.12650 1.19261 0.91802 1.27283 0.98647 0.91129 1.24723 0.98130 1.01485 0.96417 1.69672 1.35183 1.48377 1.04730 0.86164 0.83996 0.78901 0.77394 1.20546 1.21894 1.21945 0.93104 0.93195 0.93028 0.89708 0.92313 0.88904 0.91016 0.73834 0.90220 0.90248 0.90832 0.90939 0.90635 0.92433 0.90373 0.78216 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 37.16 0.36 -1.64 16 2 C -0.11 -1.70 5.31 -26.73 -0.14 -1.85 16 3 C -0.10 -1.60 1.92 -90.50 -0.17 -1.78 16 4 H 0.07 1.17 8.14 -51.94 -0.42 0.75 16 5 C 0.12 1.58 5.34 -3.71 -0.02 1.56 16 6 N -0.59 -7.78 2.97 -174.41 -0.52 -8.30 16 7 C 0.59 8.35 7.15 -12.99 -0.09 8.26 16 8 O -0.54 -9.00 16.53 5.16 0.09 -8.92 16 9 C -0.06 -0.70 5.11 -81.97 -0.42 -1.12 16 10 N -0.54 -5.85 6.24 -10.90 -0.07 -5.92 16 11 H 0.43 3.67 8.96 -40.82 -0.37 3.31 16 12 C 0.40 4.40 9.43 -89.60 -0.84 3.55 16 13 O -0.44 -3.70 13.62 -17.31 -0.24 -3.94 16 14 N -0.48 -6.20 11.22 -10.83 -0.12 -6.32 16 15 C 0.07 0.88 6.68 -82.54 -0.55 0.33 16 16 C -0.08 -0.72 10.23 36.00 0.37 -0.35 16 17 C 0.11 1.39 6.26 -3.71 -0.02 1.36 16 18 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 19 C 0.18 3.28 2.19 -67.89 -0.15 3.13 16 20 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 21 N -0.72 -16.65 4.33 -53.39 -0.23 -16.88 16 22 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -27.17 13.06 55.49 0.72 -26.44 16 26 Si 0.90 21.72 29.55 -169.99 -5.02 16.70 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.59 6.70 -51.93 -0.35 0.25 16 32 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.08 1.57 7.22 -51.93 -0.37 1.20 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.28 5.72 -51.93 -0.30 0.99 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.40 1.18 9.06 45.56 0.41 1.59 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 40 H 0.07 0.68 7.93 -51.93 -0.41 0.27 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.08 0.96 6.10 -51.93 -0.32 0.64 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 45 H 0.38 9.64 7.51 -40.82 -0.31 9.34 16 46 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -32.91 374.07 -8.04 -40.94 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -6.20 Total: 11.37 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -2.08 Total: 2.07 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: -0.21 Total: -63.87 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.15 Total: -12.85 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.91 -8.04 -40.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037862521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.250 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds