Wall clock time and date at job start Tue Mar 31 2020 12:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46950 * 2 1 4 4 H 1.08987 * 109.50114 * 305.06443 * 3 2 1 5 5 C 1.53197 * 109.49384 * 65.16187 * 3 2 1 6 6 N 1.46931 * 108.77015 * 174.58611 * 5 3 2 7 7 C 1.34769 * 120.63033 * 126.37308 * 6 5 3 8 8 O 1.21735 * 120.00470 * 354.37553 * 7 6 5 9 9 C 1.46382 * 120.00213 * 174.38326 * 7 6 5 10 10 N 1.38810 * 126.83196 * 108.32621 * 9 7 6 11 11 H 0.97002 * 126.53764 * 0.02562 * 10 9 7 12 12 C 1.34942 * 106.91555 * 180.02562 * 10 9 7 13 13 O 1.35206 * 125.49188 * 180.02562 * 12 10 9 14 14 N 1.31534 * 109.01411 * 359.97438 * 12 10 9 15 15 C 1.33224 * 109.76415 * 359.72813 * 14 12 10 16 16 C 1.50693 * 126.02472 * 180.30115 * 15 14 12 17 17 C 1.46933 * 118.73730 * 306.38420 * 6 5 3 18 18 C 1.53193 * 108.77098 * 53.61587 * 17 6 5 19 19 C 1.53037 * 109.31222 * 305.35864 * 18 17 6 20 20 H 1.08994 * 109.46254 * 301.36015 * 19 18 17 21 21 N 1.46501 * 109.45668 * 181.38808 * 19 18 17 22 22 C 1.36941 * 120.00017 * 85.00252 * 21 19 18 23 23 H 1.08000 * 119.99597 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00000 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99803 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99788 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47332 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.46755 * 120.00838 * 26 24 22 29 29 H 1.48502 * 109.47314 * 240.00196 * 26 24 22 30 30 H 1.08998 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47674 * 299.99928 * 1 2 3 32 32 H 1.09007 * 109.47096 * 59.99876 * 1 2 3 33 33 H 1.08997 * 109.47152 * 240.00010 * 2 1 3 34 34 H 1.08995 * 109.46729 * 120.00020 * 2 1 3 35 35 H 1.08993 * 109.58472 * 294.36763 * 5 3 2 36 36 H 1.08993 * 109.58762 * 54.65859 * 5 3 2 37 37 H 0.96705 * 113.99987 * 90.00111 * 13 12 10 38 38 H 1.08998 * 109.47309 * 270.16737 * 16 15 14 39 39 H 1.09008 * 109.46927 * 30.16167 * 16 15 14 40 40 H 1.08992 * 109.47415 * 150.16014 * 16 15 14 41 41 H 1.09003 * 109.58814 * 293.82328 * 17 6 5 42 42 H 1.09000 * 109.58284 * 173.40215 * 17 6 5 43 43 H 1.08996 * 109.49733 * 65.31526 * 18 17 6 44 44 H 1.09004 * 109.49382 * 185.37642 * 18 17 6 45 45 H 0.97003 * 119.99805 * 264.99987 * 21 19 18 46 46 H 0.97007 * 119.99263 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9823 -0.8409 5 6 1.6384 2.1267 1.3106 6 7 2.2450 3.4644 1.3507 7 6 1.4856 4.5564 1.5674 8 8 0.2742 4.4529 1.6299 9 6 2.1172 5.8672 1.7272 10 7 2.0944 6.9181 0.8205 11 1 1.6549 6.9253 -0.0442 12 6 2.8004 7.9275 1.3716 13 8 3.0166 9.1355 0.8041 14 7 3.2433 7.5472 2.5503 15 6 2.8417 6.3021 2.8022 16 6 3.1373 5.5109 4.0501 17 6 3.6952 3.5887 1.1500 18 6 4.0736 2.8881 -0.1587 19 6 3.5652 1.4450 -0.1256 20 1 4.0006 0.9261 0.7283 21 7 3.9542 0.7621 -1.3619 22 6 5.1918 0.1852 -1.4652 23 1 5.8810 0.2333 -0.6350 24 6 5.5602 -0.4624 -2.6364 25 7 4.7201 -0.5214 -3.6479 26 14 7.2488 -1.2487 -2.7774 27 1 7.9976 -1.0438 -1.5116 28 1 7.0973 -2.7039 -3.0326 29 1 7.9935 -0.6243 -3.9003 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 0.5532 2.2160 1.3585 36 1 1.9942 1.5364 2.1549 37 1 2.3429 9.7960 1.0163 38 1 4.0675 4.9582 3.9182 39 1 3.2357 6.1907 4.8966 40 1 2.3227 4.8117 4.2386 41 1 4.2208 3.1189 1.9814 42 1 3.9669 4.6427 1.0921 43 1 3.6192 3.4148 -0.9979 44 1 5.1577 2.8899 -0.2720 45 1 3.3350 0.7186 -2.1074 46 1 4.9778 -0.9736 -4.4666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037862521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:54 Heat of formation + Delta-G solvation = -35.913471 kcal Electronic energy + Delta-G solvation = -28293.162873 eV Core-core repulsion = 24411.096617 eV Total energy + Delta-G solvation = -3882.066256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.37736 -41.16760 -39.15789 -38.36737 -36.24723 -35.33056 -34.34893 -33.48120 -32.03643 -31.11656 -30.08844 -28.24903 -26.53613 -25.22452 -24.62950 -23.47941 -22.41795 -22.09684 -21.12612 -20.65028 -19.85499 -19.07299 -18.56013 -17.85248 -17.27813 -16.79304 -16.72614 -16.04367 -15.67391 -15.59222 -15.34205 -14.96931 -14.75699 -14.58095 -14.51779 -14.22431 -13.94746 -13.62870 -13.59771 -13.43762 -13.16814 -13.08013 -12.89704 -12.86851 -12.67169 -12.52877 -12.15583 -12.05714 -11.83845 -11.66738 -11.54527 -11.47784 -11.18899 -11.09400 -11.05870 -10.83875 -9.78530 -9.42669 -8.95375 -7.90718 -5.17888 0.35886 0.97607 1.48718 1.48943 1.49926 1.58752 1.82152 2.04052 2.58460 2.86102 3.39159 3.43792 3.76203 3.77898 3.86592 3.98493 4.01479 4.04590 4.22462 4.32712 4.41693 4.46799 4.59892 4.65704 4.72703 4.80042 4.81637 4.83283 4.88017 4.88489 4.96439 5.01665 5.04398 5.16305 5.29374 5.35785 5.44440 5.46184 5.52556 5.58966 5.64702 5.76926 6.19193 6.31082 6.62365 6.70119 6.88179 7.37901 8.13913 8.36487 9.32985 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013708 B = 0.003546 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.160276 B = 7893.830027 C = 9015.689163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.092 4.092 4 H 0.050 0.950 5 C 0.124 3.876 6 N -0.584 5.584 7 C 0.600 3.400 8 O -0.565 6.565 9 C -0.079 4.079 10 N -0.539 5.539 11 H 0.433 0.567 12 C 0.407 3.593 13 O -0.443 6.443 14 N -0.508 5.508 15 C 0.074 3.926 16 C -0.077 4.077 17 C 0.120 3.880 18 C -0.141 4.141 19 C 0.179 3.821 20 H 0.055 0.945 21 N -0.731 5.731 22 C -0.228 4.228 23 H 0.079 0.921 24 C -0.075 4.075 25 N -0.971 5.971 26 Si 0.964 3.036 27 H -0.264 1.264 28 H -0.298 1.298 29 H -0.300 1.300 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.429 0.571 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.040 0.960 44 H 0.066 0.934 45 H 0.370 0.630 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.964 14.075 14.605 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.112 4.112 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.314 5.314 7 C 0.386 3.614 8 O -0.444 6.444 9 C -0.196 4.196 10 N -0.157 5.157 11 H 0.274 0.726 12 C 0.106 3.894 13 O -0.247 6.247 14 N -0.240 5.240 15 C -0.059 4.059 16 C -0.134 4.134 17 C -0.002 4.002 18 C -0.182 4.182 19 C 0.071 3.929 20 H 0.073 0.927 21 N -0.369 5.369 22 C -0.360 4.360 23 H 0.097 0.903 24 C -0.267 4.267 25 N -0.622 5.622 26 Si 0.795 3.205 27 H -0.188 1.188 28 H -0.225 1.225 29 H -0.227 1.227 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.291 0.709 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.115 0.885 42 H 0.101 0.899 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.202 0.798 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.430 14.293 14.945 21.656 hybrid contribution -0.328 -0.503 -2.201 2.282 sum -6.758 13.790 12.744 19.956 Atomic orbital electron populations 1.21786 0.94904 1.01917 1.01750 1.21352 0.96008 0.94966 1.02149 1.21627 0.95680 0.96648 0.97289 0.93125 1.21816 0.99661 0.80834 0.97459 1.48074 1.09010 1.06350 1.68011 1.16874 0.85376 0.82770 0.76334 1.90832 1.14671 1.86519 1.52377 1.20317 1.12832 0.91487 0.94917 1.43502 1.41279 1.11905 1.18968 0.72594 1.20175 0.95108 0.85701 0.88425 1.84820 1.52854 1.16176 1.70856 1.70200 1.26446 1.14135 1.13179 1.21174 0.96467 0.91452 0.96818 1.20320 1.03173 0.98404 0.91526 1.21828 0.78674 1.01615 0.98115 1.22483 1.01305 0.98057 0.96352 1.20430 0.92488 0.90838 0.89171 0.92745 1.42595 1.15506 1.64878 1.13952 1.19642 0.92610 1.25421 0.98302 0.90308 1.25444 1.01389 1.03270 0.96611 1.69826 1.36980 1.50230 1.05171 0.85194 0.80419 0.77376 0.77537 1.18783 1.22528 1.22723 0.92179 0.91427 0.93816 0.93586 0.91243 0.88883 0.88656 0.70883 0.88958 0.89394 0.90529 0.88487 0.89884 0.94149 0.91569 0.79819 0.94365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.67 71.98 0.70 -2.98 16 2 C -0.11 -3.21 5.31 30.59 0.16 -3.05 16 3 C -0.09 -2.79 1.92 -10.71 -0.02 -2.81 16 4 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 5 C 0.12 3.06 5.34 86.36 0.46 3.52 16 6 N -0.58 -14.30 2.97 -823.91 -2.45 -16.75 16 7 C 0.60 15.93 7.15 86.36 0.62 16.55 16 8 O -0.57 -18.32 16.53 -4.46 -0.07 -18.39 16 9 C -0.08 -1.86 5.11 39.80 0.20 -1.65 16 10 N -0.54 -10.81 6.24 -300.13 -1.87 -12.68 16 11 H 0.43 6.96 8.96 -92.71 -0.83 6.13 16 12 C 0.41 8.29 9.43 179.99 1.70 9.99 16 13 O -0.44 -6.46 13.62 -84.86 -1.16 -7.62 16 14 N -0.51 -12.14 11.22 -301.67 -3.38 -15.53 16 15 C 0.07 1.66 6.68 41.99 0.28 1.95 16 16 C -0.08 -1.27 10.23 71.23 0.73 -0.54 16 17 C 0.12 2.83 6.26 86.36 0.54 3.37 16 18 C -0.14 -4.45 5.66 30.67 0.17 -4.27 16 19 C 0.18 6.30 2.19 45.02 0.10 6.40 16 20 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 21 N -0.73 -34.28 4.33 -322.82 -1.40 -35.68 16 22 C -0.23 -11.89 9.93 84.03 0.83 -11.06 16 23 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 24 C -0.08 -4.17 5.50 84.86 0.47 -3.70 16 25 N -0.97 -58.23 13.06 21.65 0.28 -57.95 16 26 Si 0.96 45.03 29.55 68.60 2.03 47.05 16 27 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 28 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 29 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.47 6.70 -2.39 -0.02 1.45 16 32 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.05 1.75 7.22 -2.39 -0.02 1.74 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.09 2.38 5.72 -2.39 -0.01 2.36 16 36 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.43 1.42 9.06 -74.05 -0.67 0.75 16 38 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.08 1.22 7.93 -2.39 -0.02 1.20 16 41 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.08 1.91 6.10 -2.39 -0.01 1.90 16 43 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 45 H 0.37 19.29 7.51 -92.71 -0.70 18.59 16 46 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 Total: -1.00 -71.42 374.07 -2.25 -73.67 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: -1.17 Total: 32.17 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 6.94 Total: 11.70 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -8.82 Total: -138.59 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -1.23 Total: -26.01 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -71.42 -2.25 -73.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037862521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.757 kcal (2) G-P(sol) polarization free energy of solvation -71.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds