Wall clock time and date at job start Tue Mar 31 2020 12:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47013 * 2 1 4 4 H 1.09001 * 109.49829 * 55.06342 * 3 2 1 5 5 C 1.53192 * 109.50064 * 295.00159 * 3 2 1 6 6 N 1.46917 * 108.77979 * 185.37983 * 5 3 2 7 7 C 1.34783 * 120.63462 * 233.58918 * 6 5 3 8 8 O 1.21735 * 119.99665 * 6.39928 * 7 6 5 9 9 C 1.46376 * 119.99990 * 186.40644 * 7 6 5 10 10 C 1.36720 * 126.82869 * 21.28806 * 9 7 6 11 11 N 1.33223 * 107.96237 * 180.02562 * 10 9 7 12 12 C 1.31531 * 109.76481 * 359.75156 * 11 10 9 13 13 O 1.35203 * 125.49725 * 180.28871 * 12 11 10 14 14 N 1.34950 * 109.01211 * 0.40869 * 12 11 10 15 15 C 1.46500 * 126.54463 * 179.86435 * 14 12 11 16 16 C 1.46930 * 118.73782 * 53.85873 * 6 5 3 17 17 C 1.53617 * 108.54306 * 306.09660 * 16 6 5 18 18 C 1.53040 * 109.24479 * 54.85554 * 17 16 6 19 19 H 1.08998 * 109.46084 * 58.52731 * 18 17 16 20 20 N 1.46499 * 109.45177 * 178.49657 * 18 17 16 21 21 C 1.36930 * 119.99960 * 275.05926 * 20 18 17 22 22 H 1.07996 * 120.00189 * 0.02562 * 21 20 18 23 23 C 1.38816 * 119.99662 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00537 * 0.02562 * 23 21 20 25 25 Si 1.86812 * 119.99692 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47090 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46870 * 120.00315 * 25 23 21 28 28 H 1.48498 * 109.47028 * 240.00182 * 25 23 21 29 29 H 1.09000 * 109.46984 * 299.99654 * 1 2 3 30 30 H 1.09000 * 109.47681 * 59.99648 * 1 2 3 31 31 H 1.09002 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46984 * 240.00346 * 2 1 3 33 33 H 1.08999 * 109.47030 * 119.99974 * 2 1 3 34 34 H 1.09008 * 109.58440 * 65.59314 * 5 3 2 35 35 H 1.09004 * 109.58431 * 305.17215 * 5 3 2 36 36 H 1.07999 * 126.01527 * 0.02771 * 10 9 7 37 37 H 0.96704 * 114.00178 * 270.13721 * 13 12 11 38 38 H 1.09007 * 109.46982 * 264.11738 * 15 14 12 39 39 H 1.08994 * 109.47498 * 144.11975 * 15 14 12 40 40 H 1.08997 * 109.47348 * 24.11499 * 15 14 12 41 41 H 1.09003 * 109.58573 * 65.93053 * 16 6 5 42 42 H 1.08998 * 109.59097 * 186.35033 * 16 6 5 43 43 H 1.08996 * 109.63845 * 294.86102 * 17 16 6 44 44 H 1.09000 * 109.43309 * 174.72410 * 17 16 6 45 45 H 0.97006 * 119.99671 * 95.06143 * 20 18 17 46 46 H 0.96995 * 120.00355 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 0.8423 5 6 1.6350 2.1280 -1.3087 6 7 2.2407 3.4659 -1.3490 7 6 1.4803 4.5579 -1.5633 8 8 0.2681 4.4560 -1.6097 9 6 2.1121 5.8664 -1.7405 10 6 3.4044 6.1085 -2.1155 11 7 3.5792 7.4285 -2.1590 12 6 2.4587 8.0364 -1.8349 13 8 2.2788 9.3754 -1.7824 14 7 1.5183 7.1082 -1.5605 15 6 0.1334 7.3625 -1.1562 16 6 3.6921 3.5904 -1.1570 17 6 4.0732 2.8890 0.1555 18 6 3.5655 1.4457 0.1220 19 1 3.9992 0.9279 -0.7334 20 7 3.9578 0.7618 1.3568 21 6 5.1964 0.1866 1.4570 22 1 5.8842 0.2374 0.6260 23 6 5.5682 -0.4610 2.6272 24 7 4.7302 -0.5225 3.6402 25 14 7.2577 -1.2464 2.7637 26 1 8.0035 -1.0396 1.4963 27 1 8.0048 -0.6217 3.8847 28 1 7.1079 -2.7016 3.0187 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5495 2.2169 -1.3540 35 1 1.9912 1.5400 -2.1546 36 1 4.1518 5.3611 -2.3374 37 1 2.4739 9.7649 -0.9190 38 1 0.0589 7.3217 -0.0694 39 1 -0.5177 6.6058 -1.5937 40 1 -0.1714 8.3494 -1.5044 41 1 4.2126 3.1192 -1.9909 42 1 3.9645 4.6443 -1.1023 43 1 3.6207 3.4144 0.9964 44 1 5.1576 2.8907 0.2659 45 1 3.3400 0.7164 2.1033 46 1 4.9899 -0.9753 4.4578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037901628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:16 Heat of formation + Delta-G solvation = 16.740876 kcal Electronic energy + Delta-G solvation = -28258.203723 eV Core-core repulsion = 24378.420730 eV Total energy + Delta-G solvation = -3879.782993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.55997 -39.99074 -37.91005 -37.53315 -35.11744 -34.16956 -33.82321 -31.76448 -30.32661 -29.53205 -28.20808 -27.35467 -25.38950 -23.98625 -23.46546 -22.09011 -21.92688 -20.85324 -19.94467 -19.27097 -18.79988 -17.17973 -17.06409 -16.98342 -16.27101 -15.85578 -15.07506 -14.97775 -14.63471 -14.30499 -14.17642 -13.92881 -13.64630 -13.38255 -13.23238 -13.10042 -13.05281 -12.93294 -12.65994 -12.48627 -12.14296 -11.74880 -11.44291 -11.33463 -10.96406 -10.85487 -10.73633 -10.53719 -10.35743 -10.22136 -10.15349 -10.05659 -9.91705 -9.72897 -9.62591 -8.93366 -8.77248 -8.48736 -6.98612 -5.80028 -3.08735 0.99575 1.87619 2.41077 2.98511 3.16054 3.40782 3.46869 3.48886 3.51109 4.30443 4.48027 4.55690 4.70588 4.88956 5.00103 5.03470 5.18179 5.21212 5.25976 5.34064 5.40820 5.53307 5.57883 5.61890 5.65118 5.71008 5.83710 5.97725 6.08316 6.08967 6.12136 6.17285 6.29147 6.32752 6.36102 6.42765 6.52345 6.64159 6.80158 6.92236 7.02898 7.18333 7.35469 7.51786 7.67363 8.04887 8.38041 9.49831 10.06921 10.41599 11.42435 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015442 B = 0.003375 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.745952 B = 8294.230375 C = 9536.127461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.070 0.930 5 C 0.122 3.878 6 N -0.588 5.588 7 C 0.594 3.406 8 O -0.552 6.552 9 C -0.069 4.069 10 C 0.042 3.958 11 N -0.486 5.486 12 C 0.392 3.608 13 O -0.440 6.440 14 N -0.429 5.429 15 C 0.063 3.937 16 C 0.077 3.923 17 C -0.150 4.150 18 C 0.182 3.818 19 H 0.049 0.951 20 N -0.720 5.720 21 C -0.238 4.238 22 H 0.071 0.929 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.200 0.800 37 H 0.404 0.596 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.384 0.616 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.216 14.122 -10.433 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C 0.000 4.000 6 N -0.319 5.319 7 C 0.382 3.618 8 O -0.432 6.432 9 C -0.185 4.185 10 C -0.112 4.112 11 N -0.215 5.215 12 C 0.093 3.907 13 O -0.241 6.241 14 N -0.122 5.122 15 C -0.078 4.078 16 C -0.046 4.046 17 C -0.191 4.191 18 C 0.072 3.928 19 H 0.067 0.933 20 N -0.361 5.361 21 C -0.369 4.369 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.205 1.205 27 H -0.220 1.220 28 H -0.219 1.219 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.217 0.783 37 H 0.262 0.738 38 H 0.099 0.901 39 H 0.125 0.875 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.118 0.882 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.218 0.782 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.314 14.488 -11.191 20.106 hybrid contribution 0.181 -0.545 1.258 1.383 sum -8.133 13.943 -9.933 18.953 Atomic orbital electron populations 1.21846 0.96823 1.01062 1.01275 1.21451 0.94349 0.95618 1.03566 1.21785 0.97767 0.96271 0.96581 0.91184 1.21832 0.99486 0.80532 0.98178 1.47799 1.08742 1.06163 1.69214 1.16611 0.85940 0.82265 0.77024 1.90779 1.13390 1.86013 1.53020 1.20619 0.95070 0.86043 1.16790 1.23097 0.94042 0.92406 1.01643 1.70350 1.22088 1.06804 1.22219 1.20246 0.84666 0.82901 1.02931 1.84809 1.88968 1.11860 1.38497 1.45639 1.12223 1.05501 1.48840 1.22290 0.79038 1.04512 1.02004 1.22799 0.79035 1.03077 0.99684 1.22752 1.02343 0.99100 0.94886 1.20210 0.90675 0.90604 0.91315 0.93279 1.42416 1.16474 1.64451 1.12711 1.19261 0.91744 1.27249 0.98619 0.91115 1.24725 0.98117 1.01551 0.96430 1.69664 1.35207 1.48400 1.04732 0.86167 0.84049 0.78882 0.77380 1.20542 1.21965 1.21946 0.93020 0.93228 0.93150 0.92366 0.89730 0.88955 0.91189 0.78329 0.73831 0.90093 0.87529 0.89068 0.90750 0.88179 0.92221 0.90334 0.78228 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.67 37.16 0.36 -1.66 16 2 C -0.11 -1.73 5.31 -26.73 -0.14 -1.87 16 3 C -0.10 -1.62 1.92 -90.50 -0.17 -1.79 16 4 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 5 C 0.12 1.66 5.33 -3.72 -0.02 1.64 16 6 N -0.59 -7.89 2.97 -174.15 -0.52 -8.40 16 7 C 0.59 8.48 7.58 -12.98 -0.10 8.39 16 8 O -0.55 -9.02 14.61 5.16 0.08 -8.94 16 9 C -0.07 -0.89 6.57 -81.98 -0.54 -1.43 16 10 C 0.04 0.50 9.58 -17.50 -0.17 0.34 16 11 N -0.49 -6.38 11.22 -14.62 -0.16 -6.55 16 12 C 0.39 4.52 9.01 -89.59 -0.81 3.72 16 13 O -0.44 -3.75 13.44 -17.30 -0.23 -3.98 16 14 N -0.43 -4.96 3.20 -122.12 -0.39 -5.35 16 15 C 0.06 0.55 10.77 59.85 0.64 1.20 16 16 C 0.08 0.94 5.22 -3.49 -0.02 0.92 16 17 C -0.15 -2.38 5.67 -26.39 -0.15 -2.53 16 18 C 0.18 3.26 2.19 -67.89 -0.15 3.11 16 19 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 20 N -0.72 -16.66 4.33 -53.39 -0.23 -16.89 16 21 C -0.24 -6.19 9.93 -15.06 -0.15 -6.33 16 22 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -27.19 13.06 55.49 0.72 -26.46 16 25 Si 0.90 21.69 29.55 -169.99 -5.02 16.67 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.60 6.70 -51.93 -0.35 0.25 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.58 7.22 -51.93 -0.38 1.21 16 34 H 0.09 1.30 5.71 -51.92 -0.30 1.01 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.20 1.94 5.66 -52.49 -0.30 1.65 16 37 H 0.40 1.32 9.06 45.56 0.41 1.74 16 38 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.11 1.09 6.61 -51.93 -0.34 0.74 16 40 H 0.09 0.58 8.02 -51.93 -0.42 0.16 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.10 1.11 3.66 -51.93 -0.19 0.92 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.38 9.66 7.51 -40.82 -0.31 9.35 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 365.60 15.07 5.51 5.51 Total: -1.00 -32.98 365.60 -7.69 -40.67 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -5.93 Total: 10.46 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -1.51 Total: 3.26 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: -0.58 Total: -63.65 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.16 Total: -12.92 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.98 -7.69 -40.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037901628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.411 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds