Wall clock time and date at job start Tue Mar 31 2020 12:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47013 * 2 1 4 4 H 1.09001 * 109.49829 * 55.06342 * 3 2 1 5 5 C 1.53192 * 109.50064 * 295.00159 * 3 2 1 6 6 N 1.46917 * 108.77979 * 185.37983 * 5 3 2 7 7 C 1.34783 * 120.63462 * 233.58918 * 6 5 3 8 8 O 1.21735 * 119.99665 * 6.39928 * 7 6 5 9 9 C 1.46376 * 119.99990 * 186.40644 * 7 6 5 10 10 C 1.36720 * 126.82869 * 21.28806 * 9 7 6 11 11 N 1.33223 * 107.96237 * 180.02562 * 10 9 7 12 12 C 1.31531 * 109.76481 * 359.75156 * 11 10 9 13 13 O 1.35203 * 125.49725 * 180.28871 * 12 11 10 14 14 N 1.34950 * 109.01211 * 0.40869 * 12 11 10 15 15 C 1.46500 * 126.54463 * 179.86435 * 14 12 11 16 16 C 1.46930 * 118.73782 * 53.85873 * 6 5 3 17 17 C 1.53617 * 108.54306 * 306.09660 * 16 6 5 18 18 C 1.53040 * 109.24479 * 54.85554 * 17 16 6 19 19 H 1.08998 * 109.46084 * 58.52731 * 18 17 16 20 20 N 1.46499 * 109.45177 * 178.49657 * 18 17 16 21 21 C 1.36930 * 119.99960 * 275.05926 * 20 18 17 22 22 H 1.07996 * 120.00189 * 0.02562 * 21 20 18 23 23 C 1.38816 * 119.99662 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00537 * 0.02562 * 23 21 20 25 25 Si 1.86812 * 119.99692 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47090 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46870 * 120.00315 * 25 23 21 28 28 H 1.48498 * 109.47028 * 240.00182 * 25 23 21 29 29 H 1.09000 * 109.46984 * 299.99654 * 1 2 3 30 30 H 1.09000 * 109.47681 * 59.99648 * 1 2 3 31 31 H 1.09002 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46984 * 240.00346 * 2 1 3 33 33 H 1.08999 * 109.47030 * 119.99974 * 2 1 3 34 34 H 1.09008 * 109.58440 * 65.59314 * 5 3 2 35 35 H 1.09004 * 109.58431 * 305.17215 * 5 3 2 36 36 H 1.07999 * 126.01527 * 0.02771 * 10 9 7 37 37 H 0.96704 * 114.00178 * 270.13721 * 13 12 11 38 38 H 1.09007 * 109.46982 * 264.11738 * 15 14 12 39 39 H 1.08994 * 109.47498 * 144.11975 * 15 14 12 40 40 H 1.08997 * 109.47348 * 24.11499 * 15 14 12 41 41 H 1.09003 * 109.58573 * 65.93053 * 16 6 5 42 42 H 1.08998 * 109.59097 * 186.35033 * 16 6 5 43 43 H 1.08996 * 109.63845 * 294.86102 * 17 16 6 44 44 H 1.09000 * 109.43309 * 174.72410 * 17 16 6 45 45 H 0.97006 * 119.99671 * 95.06143 * 20 18 17 46 46 H 0.96995 * 120.00355 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 0.8423 5 6 1.6350 2.1280 -1.3087 6 7 2.2407 3.4659 -1.3490 7 6 1.4803 4.5579 -1.5633 8 8 0.2681 4.4560 -1.6097 9 6 2.1121 5.8664 -1.7405 10 6 3.4044 6.1085 -2.1155 11 7 3.5792 7.4285 -2.1590 12 6 2.4587 8.0364 -1.8349 13 8 2.2788 9.3754 -1.7824 14 7 1.5183 7.1082 -1.5605 15 6 0.1334 7.3625 -1.1562 16 6 3.6921 3.5904 -1.1570 17 6 4.0732 2.8890 0.1555 18 6 3.5655 1.4457 0.1220 19 1 3.9992 0.9279 -0.7334 20 7 3.9578 0.7618 1.3568 21 6 5.1964 0.1866 1.4570 22 1 5.8842 0.2374 0.6260 23 6 5.5682 -0.4610 2.6272 24 7 4.7302 -0.5225 3.6402 25 14 7.2577 -1.2464 2.7637 26 1 8.0035 -1.0396 1.4963 27 1 8.0048 -0.6217 3.8847 28 1 7.1079 -2.7016 3.0187 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5495 2.2169 -1.3540 35 1 1.9912 1.5400 -2.1546 36 1 4.1518 5.3611 -2.3374 37 1 2.4739 9.7649 -0.9190 38 1 0.0589 7.3217 -0.0694 39 1 -0.5177 6.6058 -1.5937 40 1 -0.1714 8.3494 -1.5044 41 1 4.2126 3.1192 -1.9909 42 1 3.9645 4.6443 -1.1023 43 1 3.6207 3.4144 0.9964 44 1 5.1576 2.8907 0.2659 45 1 3.3400 0.7164 2.1033 46 1 4.9899 -0.9753 4.4578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037901628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:15 Heat of formation + Delta-G solvation = -8.424962 kcal Electronic energy + Delta-G solvation = -28259.294996 eV Core-core repulsion = 24378.420730 eV Total energy + Delta-G solvation = -3880.874265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.44241 -41.12095 -39.09739 -38.33688 -36.38560 -35.41604 -35.02581 -33.43406 -31.35526 -31.08576 -29.38361 -28.12796 -26.81449 -25.19811 -24.99075 -23.24428 -22.79973 -22.15787 -21.16967 -20.39198 -19.60346 -19.03085 -18.11542 -17.87652 -17.28456 -16.88338 -16.69166 -16.08366 -15.63141 -15.53987 -15.45872 -15.24006 -14.91014 -14.67184 -14.47108 -14.46502 -13.97219 -13.78157 -13.67892 -13.56980 -13.22834 -13.03642 -12.89634 -12.81393 -12.51477 -12.48321 -12.09399 -12.01504 -11.80583 -11.57513 -11.50139 -11.40208 -11.06342 -11.02539 -10.91255 -10.75577 -9.80562 -9.50936 -8.91725 -7.88248 -5.15196 0.08732 1.03376 1.50480 1.51398 1.52509 1.60459 1.97112 2.14676 2.60608 2.78568 3.32461 3.46065 3.77340 3.78172 3.82557 3.87861 4.01095 4.11409 4.21654 4.25063 4.25878 4.37463 4.44439 4.50033 4.59087 4.66415 4.76715 4.83200 4.84409 4.87198 4.94136 5.04301 5.07824 5.19583 5.25388 5.32791 5.39837 5.49244 5.52959 5.55735 5.61907 5.68010 6.27206 6.33601 6.52682 6.65247 6.97684 7.40164 8.16748 8.39271 9.35578 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015442 B = 0.003375 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.745952 B = 8294.230375 C = 9536.127461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.092 4.092 4 H 0.049 0.951 5 C 0.129 3.871 6 N -0.588 5.588 7 C 0.595 3.405 8 O -0.577 6.577 9 C -0.093 4.093 10 C 0.049 3.951 11 N -0.515 5.515 12 C 0.402 3.598 13 O -0.440 6.440 14 N -0.432 5.432 15 C 0.062 3.938 16 C 0.087 3.913 17 C -0.141 4.141 18 C 0.177 3.823 19 H 0.054 0.946 20 N -0.731 5.731 21 C -0.226 4.226 22 H 0.080 0.920 23 C -0.077 4.077 24 N -0.972 5.972 25 Si 0.965 3.035 26 H -0.263 1.263 27 H -0.299 1.299 28 H -0.299 1.299 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.220 0.780 37 H 0.428 0.572 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.117 0.883 43 H 0.040 0.960 44 H 0.070 0.930 45 H 0.370 0.630 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.864 15.468 -12.510 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.112 4.112 4 H 0.068 0.932 5 C 0.007 3.993 6 N -0.319 5.319 7 C 0.384 3.616 8 O -0.459 6.459 9 C -0.209 4.209 10 C -0.105 4.105 11 N -0.244 5.244 12 C 0.102 3.898 13 O -0.245 6.245 14 N -0.125 5.125 15 C -0.079 4.079 16 C -0.035 4.035 17 C -0.182 4.182 18 C 0.069 3.931 19 H 0.072 0.928 20 N -0.370 5.370 21 C -0.358 4.358 22 H 0.098 0.902 23 C -0.269 4.269 24 N -0.623 5.623 25 Si 0.795 3.205 26 H -0.187 1.187 27 H -0.227 1.227 28 H -0.227 1.227 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.236 0.764 37 H 0.290 0.710 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.135 0.865 41 H 0.120 0.880 42 H 0.134 0.866 43 H 0.058 0.942 44 H 0.088 0.912 45 H 0.201 0.799 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.958 15.878 -13.306 22.192 hybrid contribution 0.018 -0.837 1.862 2.042 sum -7.941 15.041 -11.444 20.500 Atomic orbital electron populations 1.21781 0.94959 1.01863 1.01707 1.21353 0.95978 0.95116 1.02064 1.21625 0.95885 0.96459 0.97261 0.93213 1.21748 0.99539 0.80774 0.97283 1.47811 1.09096 1.05953 1.69018 1.16774 0.85623 0.82781 0.76439 1.90764 1.14469 1.86406 1.54272 1.20505 0.95652 0.86012 1.18760 1.23424 0.94005 0.92609 1.00441 1.70370 1.23110 1.07294 1.23606 1.20373 0.84300 0.83787 1.01343 1.84773 1.88884 1.10250 1.40546 1.45805 1.13054 1.05095 1.48576 1.22423 0.77547 1.05315 1.02590 1.22822 0.78570 1.03832 0.98294 1.22543 1.01471 0.97622 0.96515 1.20463 0.92321 0.91233 0.89102 0.92845 1.42608 1.15451 1.64951 1.13989 1.19652 0.92526 1.25302 0.98274 0.90195 1.25454 1.01415 1.03384 0.96641 1.69822 1.37025 1.50294 1.05185 0.85188 0.80451 0.77286 0.77571 1.18697 1.22718 1.22693 0.93784 0.91542 0.92205 0.91385 0.93577 0.89112 0.89083 0.76438 0.71000 0.89111 0.89165 0.86534 0.87988 0.86596 0.94151 0.91157 0.79889 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.67 71.98 0.70 -3.05 16 2 C -0.11 -3.29 5.31 30.59 0.16 -3.12 16 3 C -0.09 -2.84 1.92 -10.72 -0.02 -2.86 16 4 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 5 C 0.13 3.27 5.33 86.36 0.46 3.73 16 6 N -0.59 -14.66 2.97 -823.09 -2.44 -17.11 16 7 C 0.59 16.13 7.58 86.36 0.65 16.78 16 8 O -0.58 -18.33 14.61 -4.46 -0.07 -18.39 16 9 C -0.09 -2.25 6.57 39.80 0.26 -1.99 16 10 C 0.05 1.07 9.58 84.13 0.81 1.88 16 11 N -0.51 -12.40 11.22 -313.66 -3.52 -15.92 16 12 C 0.40 8.37 9.01 179.99 1.62 9.99 16 13 O -0.44 -6.28 13.44 -84.83 -1.14 -7.42 16 14 N -0.43 -9.20 3.20 -652.00 -2.09 -11.29 16 15 C 0.06 0.98 10.77 127.77 1.38 2.36 16 16 C 0.09 1.92 5.22 86.51 0.45 2.37 16 17 C -0.14 -4.33 5.67 30.82 0.17 -4.16 16 18 C 0.18 6.25 2.19 45.02 0.10 6.35 16 19 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 20 N -0.73 -34.39 4.33 -322.82 -1.40 -35.78 16 21 C -0.23 -11.76 9.93 84.04 0.83 -10.92 16 22 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 23 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 24 N -0.97 -58.43 13.06 21.65 0.28 -58.14 16 25 Si 0.96 45.01 29.55 68.60 2.03 47.04 16 26 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 27 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 28 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 29 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.49 6.70 -2.39 -0.02 1.47 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 1.78 7.22 -2.39 -0.02 1.76 16 34 H 0.09 2.40 5.71 -2.38 -0.01 2.39 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.22 3.59 5.66 -2.91 -0.02 3.57 16 37 H 0.43 1.53 9.06 -74.05 -0.67 0.86 16 38 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.09 1.77 6.61 -2.39 -0.02 1.75 16 40 H 0.12 1.19 8.02 -2.39 -0.02 1.17 16 41 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.12 2.27 3.66 -2.39 -0.01 2.26 16 43 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.37 19.35 7.51 -92.70 -0.70 18.66 16 46 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -72.21 365.60 -0.64 -72.85 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: -0.34 Total: 30.63 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 8.04 Total: 13.53 kcal Atomic # 7 Polarization: -129.07 SS G_CDS: -9.17 Total: -138.24 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -1.20 Total: -25.81 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -72.21 -0.64 -72.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037901628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.427 kcal (2) G-P(sol) polarization free energy of solvation -72.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds