Wall clock time and date at job start Tue Mar 31 2020 12:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47011 * 2 1 4 4 H 1.09001 * 109.49621 * 55.07345 * 3 2 1 5 5 C 1.53185 * 109.49839 * 295.00289 * 3 2 1 6 6 N 1.46928 * 108.77260 * 185.41373 * 5 3 2 7 7 C 1.34781 * 120.62866 * 233.62571 * 6 5 3 8 8 O 1.21732 * 119.99922 * 0.88836 * 7 6 5 9 9 C 1.46379 * 119.99601 * 180.88243 * 7 6 5 10 10 C 1.36719 * 126.82738 * 25.77803 * 9 7 6 11 11 N 1.33231 * 107.96124 * 179.86822 * 10 9 7 12 12 C 1.31540 * 109.76158 * 0.40316 * 11 10 9 13 13 O 1.35204 * 125.49250 * 179.71583 * 12 11 10 14 14 N 1.34951 * 109.01516 * 359.74932 * 12 11 10 15 15 C 1.46492 * 126.54472 * 180.02562 * 14 12 11 16 16 C 1.46923 * 118.73945 * 53.60986 * 6 5 3 17 17 C 1.53187 * 108.77510 * 306.38820 * 16 6 5 18 18 C 1.53039 * 109.31205 * 54.63681 * 17 16 6 19 19 H 1.09002 * 109.45939 * 178.61234 * 18 17 16 20 20 N 1.46499 * 109.46062 * 58.65781 * 18 17 16 21 21 C 1.36931 * 120.00428 * 84.93054 * 20 18 17 22 22 H 1.08005 * 119.99738 * 359.97438 * 21 20 18 23 23 C 1.38807 * 120.00327 * 180.02562 * 21 20 18 24 24 N 1.31626 * 120.00215 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99954 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47208 * 90.00125 * 25 23 21 27 27 H 1.48504 * 109.47284 * 209.99957 * 25 23 21 28 28 H 1.48500 * 109.47102 * 330.00037 * 25 23 21 29 29 H 1.09000 * 109.47483 * 299.99430 * 1 2 3 30 30 H 1.09006 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47220 * 59.99719 * 1 2 3 32 32 H 1.08998 * 109.47220 * 120.00281 * 2 1 3 33 33 H 1.09001 * 109.47247 * 240.00075 * 2 1 3 34 34 H 1.08997 * 109.58607 * 305.20017 * 5 3 2 35 35 H 1.08996 * 109.58920 * 65.48165 * 5 3 2 36 36 H 1.07992 * 126.02145 * 0.02562 * 10 9 7 37 37 H 0.96701 * 113.99556 * 270.03874 * 13 12 11 38 38 H 1.09005 * 109.47130 * 264.46087 * 15 14 12 39 39 H 1.09003 * 109.47062 * 24.46010 * 15 14 12 40 40 H 1.08996 * 109.47609 * 144.46271 * 15 14 12 41 41 H 1.08994 * 109.58902 * 66.17701 * 16 6 5 42 42 H 1.09007 * 109.58713 * 186.60296 * 16 6 5 43 43 H 1.09000 * 109.49928 * 174.58812 * 17 16 6 44 44 H 1.09001 * 109.49983 * 294.65198 * 17 16 6 45 45 H 0.97006 * 119.99812 * 264.93403 * 20 18 17 46 46 H 0.96996 * 119.99760 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9816 0.8424 5 6 1.6349 2.1280 -1.3087 6 7 2.2414 3.4657 -1.3492 7 6 1.4813 4.5580 -1.5627 8 8 0.2782 4.4434 -1.7081 9 6 2.1027 5.8822 -1.6196 10 6 3.3952 6.1669 -1.9626 11 7 3.5577 7.4874 -1.8919 12 6 2.4331 8.0542 -1.5121 13 8 2.2443 9.3808 -1.3323 14 7 1.4983 7.0980 -1.3301 15 6 0.1106 7.3037 -0.9082 16 6 3.6921 3.5899 -1.1521 17 6 4.0740 2.8880 0.1548 18 6 3.5655 1.4449 0.1217 19 1 3.8574 0.9359 1.0402 20 7 4.1479 0.7485 -1.0281 21 6 5.3860 0.1727 -0.9247 22 1 5.9333 0.2324 0.0045 23 6 5.9380 -0.4867 -2.0142 24 7 7.1279 -1.0406 -1.9146 25 14 4.9917 -0.5892 -3.6215 26 1 5.3321 0.5797 -4.4718 27 1 5.3568 -1.8411 -4.3320 28 1 3.5339 -0.5878 -3.3386 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.9906 1.5398 -2.1546 35 1 0.5494 2.2151 -1.3549 36 1 4.1506 5.4483 -2.2441 37 1 2.4352 9.6872 -0.4351 38 1 0.0345 7.1656 0.1704 39 1 -0.2019 8.3151 -1.1680 40 1 -0.5332 6.5836 -1.4130 41 1 4.2155 3.1209 -1.9852 42 1 3.9640 4.6439 -1.0938 43 1 5.1584 2.8892 0.2650 44 1 3.6223 3.4141 0.9958 45 1 3.6565 0.6953 -1.8628 46 1 7.5138 -1.5010 -2.6761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037901632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:19 Heat of formation + Delta-G solvation = 24.029702 kcal Electronic energy + Delta-G solvation = -28822.005829 eV Core-core repulsion = 24942.538904 eV Total energy + Delta-G solvation = -3879.466925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.53047 -40.07197 -38.04774 -37.54291 -35.01693 -34.11228 -33.90533 -31.81513 -30.33969 -29.84450 -28.36427 -27.34819 -25.60812 -24.06681 -23.33925 -22.50052 -21.93089 -20.89612 -19.83485 -18.90236 -18.45910 -17.91484 -17.03808 -16.92524 -16.24568 -15.88151 -15.08262 -14.85389 -14.64009 -14.60288 -14.20125 -14.03782 -13.67158 -13.45894 -13.29589 -13.21642 -13.04011 -12.91753 -12.54702 -12.45464 -12.43112 -11.79596 -11.68456 -11.31557 -11.06432 -10.97854 -10.82773 -10.54018 -10.40658 -10.30903 -10.23583 -10.02584 -9.87890 -9.84312 -9.58214 -8.97691 -8.71790 -8.41432 -7.31166 -5.80998 -3.16698 1.04159 1.88764 2.45127 3.01711 3.17551 3.32622 3.35191 3.42930 3.53585 4.34793 4.48641 4.54429 4.74791 4.86072 4.95466 5.04735 5.09528 5.17311 5.24759 5.29853 5.36300 5.49351 5.52122 5.56205 5.62340 5.69466 5.74565 5.83952 5.97479 6.00070 6.12321 6.13679 6.19874 6.22084 6.28708 6.39674 6.45734 6.52130 6.62657 6.71859 6.82990 7.20780 7.41257 7.55893 7.94960 8.08284 8.37968 9.15894 9.88450 10.07886 11.37353 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.004178 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.678003 B = 6699.462125 C = 7769.742413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.106 4.106 4 H 0.072 0.928 5 C 0.119 3.881 6 N -0.585 5.585 7 C 0.593 3.407 8 O -0.555 6.555 9 C -0.068 4.068 10 C 0.043 3.957 11 N -0.484 5.484 12 C 0.390 3.610 13 O -0.440 6.440 14 N -0.430 5.430 15 C 0.064 3.936 16 C 0.080 3.920 17 C -0.148 4.148 18 C 0.184 3.816 19 H 0.061 0.939 20 N -0.743 5.743 21 C -0.242 4.242 22 H 0.091 0.909 23 C 0.009 3.991 24 N -0.932 5.932 25 Si 0.876 3.124 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.278 1.278 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.202 0.798 37 H 0.403 0.597 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.051 0.949 45 H 0.360 0.640 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.742 15.168 5.348 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.126 4.126 4 H 0.090 0.910 5 C -0.002 4.002 6 N -0.316 5.316 7 C 0.380 3.620 8 O -0.435 6.435 9 C -0.184 4.184 10 C -0.111 4.111 11 N -0.213 5.213 12 C 0.091 3.909 13 O -0.241 6.241 14 N -0.123 5.123 15 C -0.078 4.078 16 C -0.042 4.042 17 C -0.189 4.189 18 C 0.074 3.926 19 H 0.079 0.921 20 N -0.387 5.387 21 C -0.371 4.371 22 H 0.109 0.891 23 C -0.187 4.187 24 N -0.580 5.580 25 Si 0.707 3.293 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.218 0.782 37 H 0.261 0.739 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.117 0.883 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.194 0.806 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.779 15.580 4.665 21.316 hybrid contribution -1.110 -0.380 -0.557 1.299 sum -14.889 15.200 4.109 21.671 Atomic orbital electron populations 1.21861 0.96635 1.01223 1.01424 1.21438 0.94465 0.95607 1.03453 1.21805 0.97593 0.96228 0.96968 0.90974 1.21752 0.99172 0.80913 0.98397 1.47819 1.09022 1.05906 1.68835 1.16612 0.85766 0.82369 0.77216 1.90773 1.14051 1.86459 1.52228 1.20598 0.94803 0.86500 1.16512 1.23126 0.94165 0.91900 1.01872 1.70368 1.21910 1.07860 1.21145 1.20251 0.84789 0.82548 1.03302 1.84813 1.88904 1.13727 1.36638 1.45614 1.12008 1.05711 1.48999 1.22266 0.79057 1.04729 1.01755 1.22629 0.78586 1.02560 1.00380 1.22487 1.02495 0.98563 0.95328 1.20199 0.89286 0.90826 0.92289 0.92134 1.42834 1.19604 1.65850 1.10405 1.19043 0.91812 1.27037 0.99255 0.89138 1.24625 0.96404 1.00222 0.97491 1.69688 1.16308 1.41215 1.30793 0.86693 0.79591 0.77556 0.85474 1.21032 1.21760 1.20419 0.93150 0.93008 0.92871 0.91431 0.90994 0.91175 0.89043 0.78181 0.73940 0.90241 0.89061 0.87612 0.89596 0.88279 0.89921 0.92982 0.80618 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.67 37.16 0.36 -1.49 16 2 C -0.11 -1.59 5.19 -26.73 -0.14 -1.73 16 3 C -0.11 -1.53 2.14 -90.50 -0.19 -1.73 16 4 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 5 C 0.12 1.78 5.03 -3.71 -0.02 1.76 16 6 N -0.59 -8.55 2.97 -174.43 -0.52 -9.06 16 7 C 0.59 8.89 7.57 -12.98 -0.10 8.79 16 8 O -0.55 -9.34 14.72 5.16 0.08 -9.26 16 9 C -0.07 -0.92 6.55 -81.97 -0.54 -1.46 16 10 C 0.04 0.57 9.58 -17.49 -0.17 0.40 16 11 N -0.48 -6.74 11.22 -14.62 -0.16 -6.90 16 12 C 0.39 4.66 9.01 -89.59 -0.81 3.85 16 13 O -0.44 -3.85 13.44 -17.31 -0.23 -4.08 16 14 N -0.43 -5.07 3.20 -122.12 -0.39 -5.46 16 15 C 0.06 0.55 10.82 59.84 0.65 1.20 16 16 C 0.08 1.14 5.13 -3.72 -0.02 1.12 16 17 C -0.15 -2.22 5.78 -26.61 -0.15 -2.37 16 18 C 0.18 3.10 2.53 -67.89 -0.17 2.93 16 19 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 20 N -0.74 -15.46 3.52 -53.39 -0.19 -15.65 16 21 C -0.24 -6.21 10.41 -15.06 -0.16 -6.37 16 22 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 23 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 24 N -0.93 -28.08 13.97 55.49 0.78 -27.31 16 25 Si 0.88 21.11 27.73 -169.99 -4.71 16.39 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 28 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.64 6.69 -51.93 -0.35 0.29 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.18 7.69 -51.93 -0.40 0.78 16 34 H 0.07 1.14 6.64 -51.93 -0.34 0.79 16 35 H 0.09 1.35 5.72 -51.93 -0.30 1.06 16 36 H 0.20 2.38 5.75 -52.49 -0.30 2.08 16 37 H 0.40 1.33 9.06 45.56 0.41 1.75 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.58 8.03 -51.93 -0.42 0.16 16 40 H 0.11 1.09 6.64 -51.93 -0.34 0.74 16 41 H 0.09 1.37 7.74 -51.93 -0.40 0.97 16 42 H 0.10 1.24 3.41 -51.93 -0.18 1.06 16 43 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.36 7.55 3.80 -40.82 -0.16 7.39 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 359.02 15.07 5.41 5.41 Total: -1.00 -33.07 359.02 -7.24 -40.31 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.74 Total: 10.57 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -1.55 Total: 5.04 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: -0.49 Total: -64.37 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.16 Total: -13.34 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.71 Total: 16.39 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.07 -7.24 -40.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037901632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.337 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds