Wall clock time and date at job start Tue Mar 31 2020 12:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47011 * 2 1 4 4 H 1.09001 * 109.49621 * 55.07345 * 3 2 1 5 5 C 1.53185 * 109.49839 * 295.00289 * 3 2 1 6 6 N 1.46928 * 108.77260 * 185.41373 * 5 3 2 7 7 C 1.34781 * 120.62866 * 233.62571 * 6 5 3 8 8 O 1.21732 * 119.99922 * 0.88836 * 7 6 5 9 9 C 1.46379 * 119.99601 * 180.88243 * 7 6 5 10 10 C 1.36719 * 126.82738 * 25.77803 * 9 7 6 11 11 N 1.33231 * 107.96124 * 179.86822 * 10 9 7 12 12 C 1.31540 * 109.76158 * 0.40316 * 11 10 9 13 13 O 1.35204 * 125.49250 * 179.71583 * 12 11 10 14 14 N 1.34951 * 109.01516 * 359.74932 * 12 11 10 15 15 C 1.46492 * 126.54472 * 180.02562 * 14 12 11 16 16 C 1.46923 * 118.73945 * 53.60986 * 6 5 3 17 17 C 1.53187 * 108.77510 * 306.38820 * 16 6 5 18 18 C 1.53039 * 109.31205 * 54.63681 * 17 16 6 19 19 H 1.09002 * 109.45939 * 178.61234 * 18 17 16 20 20 N 1.46499 * 109.46062 * 58.65781 * 18 17 16 21 21 C 1.36931 * 120.00428 * 84.93054 * 20 18 17 22 22 H 1.08005 * 119.99738 * 359.97438 * 21 20 18 23 23 C 1.38807 * 120.00327 * 180.02562 * 21 20 18 24 24 N 1.31626 * 120.00215 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99954 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47208 * 90.00125 * 25 23 21 27 27 H 1.48504 * 109.47284 * 209.99957 * 25 23 21 28 28 H 1.48500 * 109.47102 * 330.00037 * 25 23 21 29 29 H 1.09000 * 109.47483 * 299.99430 * 1 2 3 30 30 H 1.09006 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47220 * 59.99719 * 1 2 3 32 32 H 1.08998 * 109.47220 * 120.00281 * 2 1 3 33 33 H 1.09001 * 109.47247 * 240.00075 * 2 1 3 34 34 H 1.08997 * 109.58607 * 305.20017 * 5 3 2 35 35 H 1.08996 * 109.58920 * 65.48165 * 5 3 2 36 36 H 1.07992 * 126.02145 * 0.02562 * 10 9 7 37 37 H 0.96701 * 113.99556 * 270.03874 * 13 12 11 38 38 H 1.09005 * 109.47130 * 264.46087 * 15 14 12 39 39 H 1.09003 * 109.47062 * 24.46010 * 15 14 12 40 40 H 1.08996 * 109.47609 * 144.46271 * 15 14 12 41 41 H 1.08994 * 109.58902 * 66.17701 * 16 6 5 42 42 H 1.09007 * 109.58713 * 186.60296 * 16 6 5 43 43 H 1.09000 * 109.49928 * 174.58812 * 17 16 6 44 44 H 1.09001 * 109.49983 * 294.65198 * 17 16 6 45 45 H 0.97006 * 119.99812 * 264.93403 * 20 18 17 46 46 H 0.96996 * 119.99760 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9816 0.8424 5 6 1.6349 2.1280 -1.3087 6 7 2.2414 3.4657 -1.3492 7 6 1.4813 4.5580 -1.5627 8 8 0.2782 4.4434 -1.7081 9 6 2.1027 5.8822 -1.6196 10 6 3.3952 6.1669 -1.9626 11 7 3.5577 7.4874 -1.8919 12 6 2.4331 8.0542 -1.5121 13 8 2.2443 9.3808 -1.3323 14 7 1.4983 7.0980 -1.3301 15 6 0.1106 7.3037 -0.9082 16 6 3.6921 3.5899 -1.1521 17 6 4.0740 2.8880 0.1548 18 6 3.5655 1.4449 0.1217 19 1 3.8574 0.9359 1.0402 20 7 4.1479 0.7485 -1.0281 21 6 5.3860 0.1727 -0.9247 22 1 5.9333 0.2324 0.0045 23 6 5.9380 -0.4867 -2.0142 24 7 7.1279 -1.0406 -1.9146 25 14 4.9917 -0.5892 -3.6215 26 1 5.3321 0.5797 -4.4718 27 1 5.3568 -1.8411 -4.3320 28 1 3.5339 -0.5878 -3.3386 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.9906 1.5398 -2.1546 35 1 0.5494 2.2151 -1.3549 36 1 4.1506 5.4483 -2.2441 37 1 2.4352 9.6872 -0.4351 38 1 0.0345 7.1656 0.1704 39 1 -0.2019 8.3151 -1.1680 40 1 -0.5332 6.5836 -1.4130 41 1 4.2155 3.1209 -1.9852 42 1 3.9640 4.6439 -1.0938 43 1 5.1584 2.8892 0.2650 44 1 3.6223 3.4141 0.9958 45 1 3.6565 0.6953 -1.8628 46 1 7.5138 -1.5010 -2.6761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037901632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:18 Heat of formation + Delta-G solvation = -1.177852 kcal Electronic energy + Delta-G solvation = -28823.098911 eV Core-core repulsion = 24942.538904 eV Total energy + Delta-G solvation = -3880.560007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.46812 -41.26207 -39.26047 -38.34943 -36.22646 -35.44724 -35.05299 -33.55603 -31.50768 -31.33999 -29.49802 -28.12548 -26.86161 -25.21866 -25.11742 -23.63578 -22.82697 -22.10738 -20.92902 -19.98215 -19.79398 -19.49907 -18.12465 -17.89373 -17.30163 -16.98764 -16.48443 -16.15681 -16.03031 -15.63059 -15.44491 -15.15321 -14.91466 -14.83609 -14.55128 -14.38750 -14.20589 -13.84695 -13.73260 -13.65649 -13.22812 -13.21522 -12.93619 -12.83088 -12.66092 -12.42313 -12.07187 -11.96614 -11.83818 -11.62767 -11.51220 -11.41177 -11.15989 -11.04173 -10.91661 -10.78329 -9.81486 -9.53782 -9.19393 -7.94894 -5.25647 0.07787 1.00504 1.39664 1.40884 1.48056 1.49978 1.94946 2.07717 2.52416 2.77020 3.29797 3.37998 3.63412 3.73500 3.76490 3.86745 3.95155 4.01016 4.16564 4.26068 4.27564 4.31655 4.38093 4.44743 4.57321 4.59882 4.65466 4.80333 4.83335 4.89755 4.97876 5.02636 5.16179 5.19458 5.22524 5.25422 5.27484 5.39078 5.48911 5.53691 5.62193 5.88044 6.24936 6.29630 6.52763 6.64164 6.94085 7.16213 7.92816 8.10839 9.27034 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.004178 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.678003 B = 6699.462125 C = 7769.742413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.094 4.094 4 H 0.091 0.909 5 C 0.122 3.878 6 N -0.584 5.584 7 C 0.596 3.404 8 O -0.575 6.575 9 C -0.087 4.087 10 C 0.043 3.957 11 N -0.515 5.515 12 C 0.404 3.596 13 O -0.439 6.439 14 N -0.429 5.429 15 C 0.062 3.938 16 C 0.087 3.913 17 C -0.141 4.141 18 C 0.177 3.823 19 H 0.051 0.949 20 N -0.741 5.741 21 C -0.210 4.210 22 H 0.062 0.938 23 C -0.058 4.058 24 N -0.985 5.985 25 Si 0.935 3.065 26 H -0.281 1.281 27 H -0.303 1.303 28 H -0.254 1.254 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.207 0.793 37 H 0.429 0.571 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.120 0.880 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.362 0.638 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.127 17.323 5.873 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.113 4.113 4 H 0.109 0.891 5 C 0.000 4.000 6 N -0.315 5.315 7 C 0.385 3.615 8 O -0.456 6.456 9 C -0.203 4.203 10 C -0.110 4.110 11 N -0.244 5.244 12 C 0.104 3.896 13 O -0.243 6.243 14 N -0.122 5.122 15 C -0.079 4.079 16 C -0.035 4.035 17 C -0.181 4.181 18 C 0.069 3.931 19 H 0.069 0.931 20 N -0.385 5.385 21 C -0.342 4.342 22 H 0.080 0.920 23 C -0.249 4.249 24 N -0.636 5.636 25 Si 0.764 3.236 26 H -0.207 1.207 27 H -0.231 1.231 28 H -0.179 1.179 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.224 0.776 37 H 0.291 0.709 38 H 0.116 0.884 39 H 0.134 0.866 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.137 0.863 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.196 0.804 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.231 17.791 5.244 24.647 hybrid contribution -0.401 -0.904 -0.588 1.150 sum -16.632 16.887 4.656 24.155 Atomic orbital electron populations 1.21798 0.94539 1.02039 1.02088 1.21404 0.96296 0.95008 1.02135 1.21702 0.95351 0.96723 0.97560 0.89076 1.21696 0.99453 0.80995 0.97900 1.47794 1.08972 1.05841 1.68857 1.16728 0.85442 0.82777 0.76521 1.90762 1.14889 1.86803 1.53171 1.20411 0.95089 0.86595 1.18205 1.23236 0.94262 0.92101 1.01449 1.70363 1.23292 1.08133 1.22654 1.20329 0.84295 0.83421 1.01547 1.84782 1.88769 1.11816 1.38955 1.45774 1.12967 1.04983 1.48497 1.22456 0.77152 1.05650 1.02656 1.22567 0.78347 1.03527 0.99056 1.22356 1.01654 0.97288 0.96806 1.20426 0.91086 0.91367 0.90254 0.93139 1.42786 1.18042 1.65856 1.11804 1.18996 0.92772 1.24822 0.97574 0.91965 1.25264 0.97394 1.01289 1.00936 1.69856 1.18538 1.43639 1.31597 0.85710 0.79636 0.76791 0.81442 1.20736 1.23062 1.17921 0.91815 0.92213 0.92807 0.91730 0.93336 0.92535 0.88492 0.77633 0.70904 0.88418 0.86610 0.89317 0.91398 0.86265 0.91386 0.90602 0.80374 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.67 71.98 0.70 -2.48 16 2 C -0.11 -2.97 5.19 30.59 0.16 -2.81 16 3 C -0.09 -2.53 2.14 -10.72 -0.02 -2.55 16 4 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 5 C 0.12 3.41 5.03 86.36 0.43 3.85 16 6 N -0.58 -16.04 2.97 -823.96 -2.45 -18.49 16 7 C 0.60 16.80 7.57 86.36 0.65 17.45 16 8 O -0.57 -18.32 14.72 -4.45 -0.07 -18.38 16 9 C -0.09 -2.19 6.55 39.80 0.26 -1.93 16 10 C 0.04 1.07 9.58 84.12 0.81 1.88 16 11 N -0.52 -13.35 11.22 -313.64 -3.52 -16.87 16 12 C 0.40 8.58 9.01 179.99 1.62 10.20 16 13 O -0.44 -6.23 13.44 -84.85 -1.14 -7.37 16 14 N -0.43 -9.03 3.20 -652.00 -2.09 -11.12 16 15 C 0.06 0.89 10.82 127.77 1.38 2.27 16 16 C 0.09 2.34 5.13 86.36 0.44 2.78 16 17 C -0.14 -4.02 5.78 30.67 0.18 -3.84 16 18 C 0.18 5.80 2.53 45.02 0.11 5.91 16 19 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 20 N -0.74 -30.60 3.52 -322.82 -1.14 -31.74 16 21 C -0.21 -11.00 10.41 84.03 0.87 -10.13 16 22 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 23 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 24 N -0.98 -61.28 13.97 21.65 0.30 -60.98 16 25 Si 0.94 44.11 27.73 68.60 1.90 46.01 16 26 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 27 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 28 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.05 1.16 6.69 -2.39 -0.02 1.14 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.05 1.53 7.69 -2.39 -0.02 1.52 16 34 H 0.06 1.75 6.64 -2.39 -0.02 1.73 16 35 H 0.10 2.66 5.72 -2.39 -0.01 2.65 16 36 H 0.21 4.64 5.75 -2.91 -0.02 4.63 16 37 H 0.43 1.25 9.06 -74.06 -0.67 0.58 16 38 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.12 1.07 8.03 -2.39 -0.02 1.05 16 40 H 0.09 1.65 6.64 -2.39 -0.02 1.63 16 41 H 0.07 2.11 7.74 -2.39 -0.02 2.09 16 42 H 0.12 2.79 3.41 -2.38 -0.01 2.78 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.36 14.86 3.80 -92.70 -0.35 14.51 16 46 H 0.25 15.29 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -72.17 359.02 -0.18 -72.35 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -0.05 Total: 28.77 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 8.07 Total: 17.82 kcal Atomic # 7 Polarization: -130.31 SS G_CDS: -8.89 Total: -139.20 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -1.21 Total: -25.76 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.90 Total: 46.01 kcal Total: -72.17 -0.18 -72.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037901632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.174 kcal (2) G-P(sol) polarization free energy of solvation -72.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds