Wall clock time and date at job start Tue Mar 31 2020 12:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46945 * 2 1 4 4 H 1.08996 * 109.49642 * 304.99760 * 3 2 1 5 5 C 1.53186 * 109.49745 * 65.06582 * 3 2 1 6 6 N 1.46926 * 108.77693 * 174.58664 * 5 3 2 7 7 C 1.34776 * 120.63486 * 126.41134 * 6 5 3 8 8 O 1.21736 * 119.99679 * 351.29389 * 7 6 5 9 9 C 1.46379 * 120.00074 * 171.29001 * 7 6 5 10 10 C 1.36720 * 126.82650 * 332.18485 * 9 7 6 11 11 N 1.33223 * 107.95869 * 179.97438 * 10 9 7 12 12 C 1.31536 * 109.76391 * 359.97438 * 11 10 9 13 13 O 1.35207 * 125.49312 * 180.02562 * 12 11 10 14 14 N 1.34943 * 109.01553 * 359.73197 * 12 11 10 15 15 C 1.46503 * 126.54613 * 180.27299 * 14 12 11 16 16 C 1.46927 * 118.73541 * 306.38852 * 6 5 3 17 17 C 1.53200 * 108.77610 * 53.60978 * 16 6 5 18 18 C 1.53038 * 109.33611 * 305.37808 * 17 16 6 19 19 H 1.08996 * 109.43495 * 301.31371 * 18 17 16 20 20 N 1.46496 * 109.48533 * 181.34992 * 18 17 16 21 21 C 1.36943 * 119.99904 * 84.91607 * 20 18 17 22 22 H 1.07996 * 119.99459 * 0.02562 * 21 20 18 23 23 C 1.38811 * 119.99912 * 180.02562 * 21 20 18 24 24 N 1.31622 * 119.99792 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00159 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47165 * 90.00474 * 25 23 21 27 27 H 1.48501 * 109.47042 * 210.00475 * 25 23 21 28 28 H 1.48500 * 109.47243 * 330.00102 * 25 23 21 29 29 H 1.09000 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47089 * 299.99797 * 1 2 3 31 31 H 1.09004 * 109.47163 * 60.00226 * 1 2 3 32 32 H 1.09003 * 109.47089 * 240.00203 * 2 1 3 33 33 H 1.09004 * 109.47163 * 119.99774 * 2 1 3 34 34 H 1.09002 * 109.59088 * 294.37329 * 5 3 2 35 35 H 1.09004 * 109.59024 * 54.79463 * 5 3 2 36 36 H 1.07993 * 126.02163 * 359.97438 * 10 9 7 37 37 H 0.96705 * 114.00282 * 89.97308 * 13 12 11 38 38 H 1.08992 * 109.46917 * 264.70732 * 15 14 12 39 39 H 1.09003 * 109.47059 * 24.70440 * 15 14 12 40 40 H 1.09001 * 109.46764 * 144.70243 * 15 14 12 41 41 H 1.09009 * 109.58606 * 173.39357 * 16 6 5 42 42 H 1.08996 * 109.59124 * 293.81890 * 16 6 5 43 43 H 1.08996 * 109.49651 * 65.31455 * 17 16 6 44 44 H 1.09000 * 109.49864 * 185.37755 * 17 16 6 45 45 H 0.96996 * 120.00180 * 264.91950 * 20 18 17 46 46 H 0.96990 * 120.00177 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6056 1.9819 -0.8417 5 6 1.6364 2.1275 1.3094 6 7 2.2429 3.4652 1.3499 7 6 1.4832 4.5574 1.5655 8 8 0.2695 4.4632 1.5710 9 6 2.1176 5.8568 1.7930 10 6 3.3543 6.0821 2.3307 11 7 3.5538 7.3988 2.3646 12 6 2.5036 8.0206 1.8740 13 8 2.3680 9.3608 1.7582 14 7 1.5860 7.1050 1.4990 15 6 0.2770 7.3765 0.8999 16 6 3.6934 3.5894 1.1513 17 6 4.0739 2.8881 -0.1565 18 6 3.5654 1.4450 -0.1241 19 1 4.0000 0.9264 0.7304 20 7 3.9556 0.7615 -1.3597 21 6 5.1938 0.1857 -1.4620 22 1 5.8825 0.2352 -0.6316 23 6 5.5638 -0.4614 -2.6330 24 7 6.7537 -1.0152 -2.7311 25 14 4.3722 -0.5474 -4.0690 26 1 4.5731 0.6308 -4.9502 27 1 4.6178 -1.7914 -4.8421 28 1 2.9785 -0.5503 -3.5564 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5511 2.2169 1.3558 35 1 1.9930 1.5389 2.1548 36 1 4.0474 5.3258 2.6683 37 1 2.6861 9.7172 0.9173 38 1 -0.4841 7.3887 1.6799 39 1 0.3001 8.3448 0.3997 40 1 0.0411 6.5982 0.1741 41 1 3.9652 4.6435 1.0931 42 1 4.2177 3.1201 1.9837 43 1 3.6209 3.4142 -0.9966 44 1 5.1582 2.8898 -0.2681 45 1 3.3369 0.7169 -2.1054 46 1 7.0121 -1.4677 -3.5491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037901635.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:21 Heat of formation + Delta-G solvation = -13.674097 kcal Electronic energy + Delta-G solvation = -28335.592522 eV Core-core repulsion = 24454.490637 eV Total energy + Delta-G solvation = -3881.101885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -43.42430 -41.15365 -39.16661 -38.33418 -36.43332 -35.44043 -35.07499 -33.60521 -31.60857 -31.23891 -29.50544 -28.12977 -26.83917 -25.19961 -24.72492 -23.20571 -22.76325 -22.15947 -21.31445 -20.44472 -19.68847 -19.40693 -18.10519 -17.89330 -17.26651 -16.97857 -16.67399 -16.06989 -15.95882 -15.47806 -15.25721 -15.17387 -14.92963 -14.69058 -14.55609 -14.52260 -14.00977 -13.94819 -13.81364 -13.65284 -13.26145 -13.21104 -13.03627 -12.87518 -12.60792 -12.53170 -12.15495 -12.01278 -11.83730 -11.64388 -11.54301 -11.47352 -11.11410 -11.02474 -10.92183 -10.82786 -9.80556 -9.52831 -9.22388 -7.97763 -5.29219 0.11575 1.01763 1.38807 1.39949 1.47510 1.53088 1.94053 2.11190 2.50821 2.78334 3.30198 3.34934 3.57270 3.73418 3.76938 3.87983 3.97243 4.03640 4.20160 4.23999 4.27135 4.32221 4.42006 4.47776 4.56088 4.63035 4.69663 4.79184 4.83155 4.84275 4.90812 5.01402 5.04567 5.17844 5.25810 5.29705 5.35504 5.46622 5.50660 5.52721 5.63891 5.83718 6.25260 6.26745 6.53101 6.66122 6.96083 7.12848 7.90051 8.07654 9.23862 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015811 B = 0.003491 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.525984 B = 8019.189396 C = 8901.905531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.096 4.096 4 H 0.060 0.940 5 C 0.128 3.872 6 N -0.589 5.589 7 C 0.597 3.403 8 O -0.574 6.574 9 C -0.093 4.093 10 C 0.055 3.945 11 N -0.516 5.516 12 C 0.401 3.599 13 O -0.440 6.440 14 N -0.433 5.433 15 C 0.071 3.929 16 C 0.099 3.901 17 C -0.142 4.142 18 C 0.181 3.819 19 H 0.054 0.946 20 N -0.747 5.747 21 C -0.215 4.215 22 H 0.064 0.936 23 C -0.062 4.062 24 N -0.984 5.984 25 Si 0.944 3.056 26 H -0.285 1.285 27 H -0.301 1.301 28 H -0.253 1.253 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.211 0.789 37 H 0.428 0.572 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.361 0.639 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.144 16.989 9.019 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.116 4.116 4 H 0.079 0.921 5 C 0.006 3.994 6 N -0.320 5.320 7 C 0.386 3.614 8 O -0.456 6.456 9 C -0.209 4.209 10 C -0.099 4.099 11 N -0.245 5.245 12 C 0.102 3.898 13 O -0.245 6.245 14 N -0.126 5.126 15 C -0.070 4.070 16 C -0.023 4.023 17 C -0.183 4.183 18 C 0.073 3.927 19 H 0.072 0.928 20 N -0.389 5.389 21 C -0.347 4.347 22 H 0.082 0.918 23 C -0.253 4.253 24 N -0.636 5.636 25 Si 0.773 3.227 26 H -0.211 1.211 27 H -0.228 1.228 28 H -0.178 1.178 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.227 0.773 37 H 0.290 0.710 38 H 0.103 0.897 39 H 0.138 0.862 40 H 0.102 0.898 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.194 0.806 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.311 17.406 9.820 24.581 hybrid contribution -0.641 -0.630 -2.163 2.342 sum -14.952 16.776 7.657 23.741 Atomic orbital electron populations 1.21797 0.94727 1.02003 1.01937 1.21425 0.96200 0.95026 1.02364 1.21686 0.95344 0.96743 0.97839 0.92137 1.21757 0.99668 0.80734 0.97268 1.47822 1.09062 1.06013 1.69120 1.16757 0.85609 0.82668 0.76410 1.90795 1.14412 1.86259 1.54090 1.20532 0.97966 0.85813 1.16563 1.23142 0.93963 0.92723 1.00050 1.70352 1.23818 1.06891 1.23410 1.20346 0.85895 0.83792 0.99807 1.84797 1.84571 1.10363 1.44735 1.45815 1.16968 1.05135 1.44662 1.22302 0.80320 1.04702 0.99636 1.22391 0.78567 1.03180 0.98172 1.22450 1.01517 0.97381 0.96967 1.20430 0.92576 0.91186 0.88489 0.92789 1.42796 1.14834 1.66486 1.14817 1.19025 0.91278 1.25346 0.99006 0.91812 1.25353 0.98066 1.01229 1.00665 1.69860 1.21655 1.43830 1.28228 0.85571 0.80238 0.76620 0.80304 1.21120 1.22769 1.17790 0.92141 0.91613 0.93362 0.93224 0.91315 0.88816 0.89202 0.77301 0.71026 0.89695 0.86180 0.89803 0.87497 0.88436 0.93236 0.91434 0.80571 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.67 71.98 0.70 -2.59 16 2 C -0.11 -3.05 5.31 30.60 0.16 -2.89 16 3 C -0.10 -2.65 1.92 -10.71 -0.02 -2.67 16 4 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 5 C 0.13 2.98 5.34 86.36 0.46 3.44 16 6 N -0.59 -13.71 2.97 -823.91 -2.45 -16.16 16 7 C 0.60 15.25 7.47 86.36 0.65 15.89 16 8 O -0.57 -17.41 15.38 -4.46 -0.07 -17.48 16 9 C -0.09 -2.13 6.35 39.80 0.25 -1.88 16 10 C 0.06 1.18 9.46 84.13 0.80 1.97 16 11 N -0.52 -12.16 11.22 -313.66 -3.52 -15.68 16 12 C 0.40 8.07 9.01 179.99 1.62 9.69 16 13 O -0.44 -6.03 13.44 -84.87 -1.14 -7.17 16 14 N -0.43 -8.72 3.20 -651.99 -2.09 -10.81 16 15 C 0.07 1.03 10.42 127.77 1.33 2.37 16 16 C 0.10 2.12 5.12 86.37 0.44 2.56 16 17 C -0.14 -4.17 5.66 30.67 0.17 -4.00 16 18 C 0.18 6.01 2.19 45.02 0.10 6.11 16 19 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 20 N -0.75 -32.17 4.14 -322.82 -1.34 -33.50 16 21 C -0.22 -11.52 10.41 84.03 0.87 -10.64 16 22 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 23 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 24 N -0.98 -61.70 13.97 21.65 0.30 -61.40 16 25 Si 0.94 44.69 27.74 68.60 1.90 46.60 16 26 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 27 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 28 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.30 6.70 -2.39 -0.02 1.28 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 1.64 7.22 -2.39 -0.02 1.63 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 2.26 5.72 -2.39 -0.01 2.24 16 35 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.21 3.38 6.39 -2.91 -0.02 3.36 16 37 H 0.43 1.19 9.06 -74.05 -0.67 0.52 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.12 0.90 8.03 -2.39 -0.02 0.88 16 40 H 0.08 1.40 7.64 -2.39 -0.02 1.38 16 41 H 0.11 2.06 4.36 -2.38 -0.01 2.05 16 42 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.36 15.48 5.37 -92.71 -0.50 14.99 16 46 H 0.25 15.38 8.31 -92.72 -0.77 14.61 16 Total: -1.00 -74.67 364.84 -0.61 -75.28 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: -0.21 Total: 26.04 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 8.00 Total: 14.30 kcal Atomic # 7 Polarization: -128.47 SS G_CDS: -9.09 Total: -137.56 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -1.21 Total: -24.65 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.90 Total: 46.60 kcal Total: -74.67 -0.61 -75.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037901635.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.604 kcal (2) G-P(sol) polarization free energy of solvation -74.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds