Wall clock time and date at job start Tue Mar 31 2020 12:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47185 * 2 1 4 4 H 1.08991 * 109.52571 * 55.08076 * 3 2 1 5 5 C 1.53197 * 109.49571 * 294.99974 * 3 2 1 6 6 N 1.46925 * 108.89082 * 185.48747 * 5 3 2 7 7 C 1.34783 * 120.62729 * 233.51671 * 6 5 3 8 8 O 1.21630 * 119.99975 * 353.73422 * 7 6 5 9 9 C 1.47249 * 119.99568 * 173.74130 * 7 6 5 10 10 C 1.36254 * 126.16099 * 173.24160 * 9 7 6 11 11 N 1.36340 * 106.88734 * 179.87596 * 10 9 7 12 12 C 1.46499 * 126.20210 * 180.13519 * 11 10 9 13 13 C 1.36170 * 107.59682 * 0.38163 * 11 10 9 14 14 O 1.35464 * 125.54666 * 179.73715 * 13 11 10 15 15 N 1.30691 * 108.90370 * 359.75890 * 13 11 10 16 16 C 1.46919 * 118.74043 * 53.53558 * 6 5 3 17 17 C 1.53194 * 108.77727 * 306.39041 * 16 6 5 18 18 C 1.53040 * 109.31245 * 54.63614 * 17 16 6 19 19 H 1.09009 * 109.46038 * 58.64098 * 18 17 16 20 20 N 1.46493 * 109.46314 * 178.61250 * 18 17 16 21 21 C 1.36936 * 120.00189 * 275.00501 * 20 18 17 22 22 H 1.08003 * 120.00023 * 359.97438 * 21 20 18 23 23 C 1.38817 * 119.99933 * 180.02562 * 21 20 18 24 24 N 1.31616 * 120.00292 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99692 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47271 * 60.00267 * 25 23 21 27 27 H 1.48506 * 109.46868 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47612 * 299.99791 * 25 23 21 29 29 H 1.09000 * 109.47356 * 60.00212 * 1 2 3 30 30 H 1.08996 * 109.47219 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47241 * 300.00083 * 1 2 3 32 32 H 1.08998 * 109.47241 * 239.99917 * 2 1 3 33 33 H 1.09000 * 109.47356 * 119.99788 * 2 1 3 34 34 H 1.08998 * 109.58781 * 65.62779 * 5 3 2 35 35 H 1.09001 * 109.58207 * 305.34284 * 5 3 2 36 36 H 1.08000 * 126.55463 * 359.97438 * 10 9 7 37 37 H 1.09000 * 109.47295 * 270.26777 * 12 11 10 38 38 H 1.08999 * 109.46509 * 30.26285 * 12 11 10 39 39 H 1.09000 * 109.47350 * 150.26111 * 12 11 10 40 40 H 0.96698 * 113.99840 * 269.99640 * 14 13 11 41 41 H 1.08997 * 109.58742 * 66.18095 * 16 6 5 42 42 H 1.09007 * 109.58513 * 186.60506 * 16 6 5 43 43 H 1.09002 * 109.49737 * 174.58861 * 17 16 6 44 44 H 1.08999 * 109.49998 * 294.65325 * 17 16 6 45 45 H 0.96999 * 119.99750 * 94.99828 * 20 18 17 46 46 H 0.96993 * 119.99820 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9820 0.8423 5 6 1.6350 2.1280 -1.3088 6 7 2.2417 3.4654 -1.3529 7 6 1.4818 4.5573 -1.5698 8 8 0.3034 4.4333 -1.8443 9 6 2.0784 5.9001 -1.4747 10 6 1.4673 7.0757 -1.7925 11 7 2.3711 8.0686 -1.5555 12 6 2.1518 9.5036 -1.7529 13 6 3.5165 7.4843 -1.1072 14 8 4.6530 8.1381 -0.7668 15 7 3.3409 6.1902 -1.0593 16 6 3.6923 3.5899 -1.1564 17 6 4.0744 2.8914 0.1524 18 6 3.5658 1.4483 0.1230 19 1 3.9987 0.9279 -0.7314 20 7 3.9582 0.7672 1.3592 21 6 5.1960 0.1903 1.4599 22 1 5.8829 0.2371 0.6277 23 6 5.5676 -0.4556 2.6311 24 7 4.7304 -0.5131 3.6450 25 14 7.2559 -1.2431 2.7681 26 1 8.3025 -0.2059 2.5828 27 1 7.4057 -1.8626 4.1094 28 1 7.4021 -2.2863 1.7213 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.5497 2.2174 -1.3539 35 1 1.9886 1.5383 -2.1547 36 1 0.4592 7.1978 -2.1601 37 1 2.4347 9.7780 -2.7692 38 1 1.0986 9.7353 -1.5940 39 1 2.7586 10.0651 -1.0426 40 1 5.2726 8.2574 -1.4995 41 1 4.2156 3.1188 -1.9884 42 1 3.9644 4.6441 -1.1008 43 1 5.1589 2.8927 0.2623 44 1 3.6230 3.4197 0.9921 45 1 3.3412 0.7249 2.1065 46 1 4.9902 -0.9640 4.4635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037917583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:35 Heat of formation + Delta-G solvation = -13.082663 kcal Electronic energy + Delta-G solvation = -28114.023260 eV Core-core repulsion = 24232.947022 eV Total energy + Delta-G solvation = -3881.076238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.28692 -41.01845 -39.05881 -38.21147 -36.21091 -35.51291 -34.88300 -33.42073 -31.02373 -30.51482 -29.93591 -28.16756 -26.67447 -25.23505 -24.68147 -23.34163 -22.47808 -22.14162 -21.19882 -20.43431 -19.30678 -19.04491 -18.22729 -17.63702 -16.92775 -16.78553 -16.52194 -16.13141 -15.71169 -15.57424 -15.38673 -15.21406 -15.02340 -14.67603 -14.52716 -14.39833 -13.94451 -13.62047 -13.58838 -13.42540 -13.14690 -13.02863 -12.90065 -12.79160 -12.67427 -12.50268 -12.20896 -12.10606 -11.82080 -11.58938 -11.50472 -11.32025 -11.07353 -10.95539 -10.84835 -10.31800 -9.76001 -9.43028 -8.92491 -7.89091 -5.16683 0.48077 1.03525 1.40422 1.48059 1.51262 1.56962 2.04049 2.40422 2.59478 2.76557 3.43422 3.58904 3.70241 3.80675 3.85006 4.01836 4.10557 4.19120 4.35671 4.37764 4.41617 4.43386 4.46811 4.54077 4.67113 4.73169 4.79874 4.81934 4.85809 4.91559 4.98123 5.03391 5.12870 5.17748 5.31483 5.39745 5.44783 5.52616 5.59203 5.60716 5.64706 5.85892 6.31917 6.40279 6.64538 6.68294 7.17355 7.38077 8.14188 8.38962 9.34456 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.003557 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.680123 B = 7869.692410 C = 9530.948698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.092 4.092 4 H 0.048 0.952 5 C 0.125 3.875 6 N -0.594 5.594 7 C 0.598 3.402 8 O -0.577 6.577 9 C -0.080 4.080 10 C 0.066 3.934 11 N -0.454 5.454 12 C 0.060 3.940 13 C 0.382 3.618 14 O -0.443 6.443 15 N -0.484 5.484 16 C 0.076 3.924 17 C -0.129 4.129 18 C 0.179 3.821 19 H 0.044 0.956 20 N -0.730 5.730 21 C -0.232 4.232 22 H 0.075 0.925 23 C -0.077 4.077 24 N -0.972 5.972 25 Si 0.970 3.030 26 H -0.279 1.279 27 H -0.298 1.298 28 H -0.278 1.278 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.221 0.779 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.426 0.574 41 H 0.064 0.936 42 H 0.157 0.843 43 H 0.056 0.944 44 H 0.033 0.967 45 H 0.370 0.630 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.255 22.044 -16.756 28.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.112 4.112 4 H 0.067 0.933 5 C 0.003 3.997 6 N -0.324 5.324 7 C 0.387 3.613 8 O -0.458 6.458 9 C -0.207 4.207 10 C -0.073 4.073 11 N -0.147 5.147 12 C -0.080 4.080 13 C 0.081 3.919 14 O -0.247 6.247 15 N -0.215 5.215 16 C -0.047 4.047 17 C -0.170 4.170 18 C 0.070 3.930 19 H 0.062 0.938 20 N -0.369 5.369 21 C -0.364 4.364 22 H 0.093 0.907 23 C -0.269 4.269 24 N -0.623 5.623 25 Si 0.800 3.200 26 H -0.205 1.205 27 H -0.225 1.225 28 H -0.204 1.204 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.237 0.763 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.119 0.881 40 H 0.287 0.713 41 H 0.082 0.918 42 H 0.173 0.827 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.201 0.799 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.225 21.576 -16.137 27.653 hybrid contribution 0.732 -0.220 0.482 0.903 sum -5.493 21.356 -15.655 27.043 Atomic orbital electron populations 1.21773 0.94597 1.02016 1.01797 1.21344 0.96282 0.94828 1.01924 1.21619 0.95653 0.96656 0.97254 0.93327 1.21686 0.99399 0.81836 0.96818 1.47994 1.09198 1.06201 1.68975 1.17220 0.84822 0.83191 0.76070 1.90730 1.16386 1.86854 1.51810 1.20240 0.92784 0.94125 1.13508 1.22961 0.97378 0.85376 1.01612 1.46048 1.11101 1.10084 1.47454 1.22547 1.06216 0.73953 1.05255 1.20583 0.84730 0.85378 1.01224 1.84883 1.25335 1.74967 1.39528 1.70224 1.17389 1.11301 1.22575 1.22941 0.78258 1.07519 0.95944 1.22318 1.00398 0.97350 0.96943 1.20446 0.92581 0.91162 0.88805 0.93758 1.42566 1.15588 1.65072 1.13703 1.19568 0.92688 1.25813 0.98351 0.90719 1.25503 1.01767 1.03217 0.96399 1.69822 1.37223 1.50210 1.05014 0.85256 0.80171 0.78382 0.76234 1.20547 1.22483 1.20383 0.91530 0.91906 0.93631 0.91645 0.93507 0.89012 0.90214 0.76264 0.87708 0.87132 0.88112 0.71314 0.91758 0.82740 0.92486 0.94808 0.79851 0.94261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 9.67 71.98 0.70 -3.47 16 2 C -0.11 -3.70 5.32 30.59 0.16 -3.53 16 3 C -0.09 -3.36 1.93 -10.70 -0.02 -3.38 16 4 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 5 C 0.13 3.99 5.30 86.36 0.46 4.45 16 6 N -0.59 -19.45 2.97 -822.97 -2.45 -21.90 16 7 C 0.60 19.36 7.67 86.61 0.66 20.02 16 8 O -0.58 -20.41 16.33 -4.13 -0.07 -20.48 16 9 C -0.08 -2.14 6.71 40.40 0.27 -1.87 16 10 C 0.07 1.20 11.30 83.53 0.94 2.14 16 11 N -0.45 -6.23 3.16 -662.75 -2.09 -8.32 16 12 C 0.06 0.18 11.11 127.77 1.42 1.60 16 13 C 0.38 7.45 9.03 179.84 1.62 9.08 16 14 O -0.44 -6.36 13.55 -87.62 -1.19 -7.55 16 15 N -0.48 -12.98 7.70 -303.16 -2.33 -15.31 16 16 C 0.08 2.48 6.32 86.36 0.55 3.03 16 17 C -0.13 -5.12 5.66 30.67 0.17 -4.95 16 18 C 0.18 7.52 2.19 45.03 0.10 7.62 16 19 H 0.04 1.88 8.08 -2.38 -0.02 1.86 16 20 N -0.73 -38.22 4.33 -322.76 -1.40 -39.62 16 21 C -0.23 -13.18 9.93 84.03 0.83 -12.34 16 22 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 23 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 24 N -0.97 -61.15 13.06 21.65 0.28 -60.87 16 25 Si 0.97 47.29 29.55 68.60 2.03 49.31 16 26 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 27 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 28 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 29 H 0.07 1.70 6.70 -2.39 -0.02 1.69 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.05 1.98 7.24 -2.39 -0.02 1.97 16 34 H 0.09 2.91 5.76 -2.39 -0.01 2.89 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.22 2.70 8.06 -2.91 -0.02 2.68 16 37 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.43 1.41 9.06 -74.06 -0.67 0.73 16 41 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.16 4.92 3.65 -54.57 -0.20 4.72 16 43 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.37 21.11 7.53 -92.71 -0.70 20.41 16 46 H 0.25 15.26 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -79.10 371.39 0.57 -78.53 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: -0.54 Total: 31.87 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 8.34 Total: 14.33 kcal Atomic # 7 Polarization: -138.02 SS G_CDS: -7.99 Total: -146.01 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -1.25 Total: -28.03 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.31 kcal Total: -79.10 0.57 -78.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037917583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.443 kcal (2) G-P(sol) polarization free energy of solvation -79.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds