Wall clock time and date at job start Tue Mar 31 2020 12:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47413 * 2 1 4 4 H 1.09003 * 109.49614 * 55.00745 * 3 2 1 5 5 C 1.53185 * 109.50076 * 294.93807 * 3 2 1 6 6 N 1.46930 * 108.77706 * 185.41342 * 5 3 2 7 7 C 1.34773 * 120.63201 * 233.63106 * 6 5 3 8 8 O 1.21640 * 119.99820 * 353.83747 * 7 6 5 9 9 C 1.47245 * 120.00174 * 173.84295 * 7 6 5 10 10 C 1.36250 * 126.16446 * 172.96586 * 9 7 6 11 11 N 1.36341 * 106.88554 * 179.84418 * 10 9 7 12 12 C 1.46502 * 126.19851 * 180.15954 * 11 10 9 13 13 C 1.36168 * 107.60184 * 0.41667 * 11 10 9 14 14 O 1.35464 * 125.55096 * 179.73604 * 13 11 10 15 15 N 1.30702 * 108.89667 * 359.73990 * 13 11 10 16 16 C 1.46925 * 118.73761 * 53.60577 * 6 5 3 17 17 C 1.53186 * 108.77962 * 306.39277 * 16 6 5 18 18 C 1.53039 * 109.34051 * 54.61614 * 17 16 6 19 19 H 1.08996 * 109.48991 * 178.64777 * 18 17 16 20 20 N 1.46504 * 109.43218 * 58.68887 * 18 17 16 21 21 C 1.36942 * 119.99813 * 84.94677 * 20 18 17 22 22 H 1.07997 * 119.99777 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00022 * 180.02562 * 21 20 18 24 24 N 1.31616 * 120.00263 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00067 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47256 * 59.99678 * 25 23 21 27 27 H 1.48494 * 109.47447 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.47167 * 299.99895 * 25 23 21 29 29 H 1.08991 * 109.47501 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46657 * 300.00127 * 1 2 3 31 31 H 1.09005 * 109.47100 * 59.99282 * 1 2 3 32 32 H 1.09000 * 109.46657 * 239.99873 * 2 1 3 33 33 H 1.09005 * 109.47100 * 120.00718 * 2 1 3 34 34 H 1.09000 * 109.58406 * 305.19627 * 5 3 2 35 35 H 1.09004 * 109.58888 * 65.48357 * 5 3 2 36 36 H 1.07997 * 126.55966 * 359.97438 * 10 9 7 37 37 H 1.09007 * 109.46819 * 270.28434 * 12 11 10 38 38 H 1.08998 * 109.47541 * 30.28048 * 12 11 10 39 39 H 1.09001 * 109.47238 * 150.28936 * 12 11 10 40 40 H 0.96696 * 113.99934 * 270.02732 * 14 13 11 41 41 H 1.09004 * 109.58704 * 66.18037 * 16 6 5 42 42 H 1.08998 * 109.58690 * 186.46203 * 16 6 5 43 43 H 1.08999 * 109.50266 * 174.58694 * 17 16 6 44 44 H 1.09006 * 109.49616 * 294.65297 * 17 16 6 45 45 H 0.96999 * 120.00490 * 264.95476 * 20 18 17 46 46 H 0.96998 * 120.00464 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6058 1.9818 0.8418 5 6 1.6365 2.1275 -1.3093 6 7 2.2431 3.4651 -1.3497 7 6 1.4834 4.5575 -1.5644 8 8 0.3046 4.4342 -1.8380 9 6 2.0804 5.9000 -1.4678 10 6 1.4711 7.0758 -1.7882 11 7 2.3743 8.0683 -1.5478 12 6 2.1562 9.5034 -1.7460 13 6 3.5179 7.4836 -1.0956 14 8 4.6535 8.1369 -0.7510 15 7 3.3416 6.1894 -1.0482 16 6 3.6936 3.5893 -1.1511 17 6 4.0741 2.8879 0.1565 18 6 3.5655 1.4449 0.1242 19 1 3.8558 0.9363 1.0435 20 7 4.1496 0.7477 -1.0243 21 6 5.3876 0.1719 -0.9185 22 1 5.9330 0.2313 0.0117 23 6 5.9413 -0.4882 -2.0068 24 7 5.2764 -0.5611 -3.1403 25 14 7.6296 -1.2743 -1.8623 26 1 7.6064 -2.3036 -0.7922 27 1 7.9911 -1.9117 -3.1538 28 1 8.6334 -0.2329 -1.5257 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 1.9932 1.5390 -2.1546 35 1 0.5510 2.2147 -1.3567 36 1 0.4643 7.1983 -2.1595 37 1 2.4428 9.7776 -2.7614 38 1 1.1026 9.7357 -1.5906 39 1 2.7610 10.0646 -1.0337 40 1 5.2755 8.2567 -1.4816 41 1 4.2179 3.1199 -1.9835 42 1 3.9659 4.6433 -1.0955 43 1 5.1584 2.8890 0.2678 44 1 3.6215 3.4144 0.9968 45 1 3.6596 0.6941 -1.8597 46 1 5.6631 -1.0226 -3.9008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037917586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:39 Heat of formation + Delta-G solvation = 15.837143 kcal Electronic energy + Delta-G solvation = -28515.405364 eV Core-core repulsion = 24635.583183 eV Total energy + Delta-G solvation = -3879.822181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.38650 -39.63477 -37.75863 -37.30783 -34.74073 -33.89923 -33.58800 -31.51628 -29.39132 -29.21854 -28.56409 -27.38688 -25.11488 -23.65516 -23.35920 -22.47833 -21.65288 -20.58592 -19.77739 -18.60774 -18.11954 -17.20873 -17.02617 -16.58634 -15.77645 -15.55790 -14.91077 -14.71651 -14.62486 -14.29577 -14.19601 -13.75936 -13.51650 -13.29539 -13.20248 -13.08112 -12.88371 -12.63590 -12.36905 -12.18254 -12.00657 -11.71649 -11.24848 -11.02150 -10.91121 -10.74003 -10.59817 -10.25266 -10.16517 -10.10223 -10.05262 -9.89082 -9.63399 -9.41760 -9.14784 -8.70129 -8.69766 -7.95058 -6.83731 -5.68266 -2.95352 1.41683 1.94972 2.20533 3.29606 3.48715 3.53554 3.54027 3.65418 3.71718 4.31133 4.45036 4.65516 4.66823 4.93596 4.94640 5.22747 5.33867 5.43650 5.52614 5.63738 5.68368 5.77345 5.81358 5.87345 5.99223 6.03021 6.06618 6.22539 6.26926 6.28982 6.35431 6.47063 6.52720 6.60510 6.72972 6.79344 6.88080 6.97059 6.99554 7.13094 7.21980 7.40648 7.56301 7.78408 7.98324 8.50699 8.56282 9.61870 10.20862 10.56226 11.54406 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.004006 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.533334 B = 6987.854210 C = 8512.633672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.118 3.882 6 N -0.581 5.581 7 C 0.596 3.404 8 O -0.559 6.559 9 C -0.032 4.032 10 C 0.037 3.963 11 N -0.466 5.466 12 C 0.068 3.932 13 C 0.375 3.625 14 O -0.441 6.441 15 N -0.442 5.442 16 C 0.074 3.926 17 C -0.141 4.141 18 C 0.176 3.824 19 H 0.047 0.953 20 N -0.718 5.718 21 C -0.232 4.232 22 H 0.068 0.932 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.903 3.097 26 H -0.288 1.288 27 H -0.293 1.293 28 H -0.288 1.288 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.195 0.805 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.403 0.597 41 H 0.071 0.929 42 H 0.139 0.861 43 H 0.069 0.931 44 H 0.044 0.956 45 H 0.383 0.617 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.556 19.860 3.018 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.004 4.004 6 N -0.310 5.310 7 C 0.383 3.617 8 O -0.439 6.439 9 C -0.160 4.160 10 C -0.099 4.099 11 N -0.161 5.161 12 C -0.074 4.074 13 C 0.076 3.924 14 O -0.241 6.241 15 N -0.172 5.172 16 C -0.048 4.048 17 C -0.182 4.182 18 C 0.066 3.934 19 H 0.065 0.935 20 N -0.360 5.360 21 C -0.363 4.363 22 H 0.086 0.914 23 C -0.209 4.209 24 N -0.583 5.583 25 Si 0.735 3.265 26 H -0.215 1.215 27 H -0.219 1.219 28 H -0.215 1.215 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.212 0.788 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.260 0.740 41 H 0.089 0.911 42 H 0.155 0.845 43 H 0.087 0.913 44 H 0.063 0.937 45 H 0.218 0.782 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.557 19.337 3.742 21.095 hybrid contribution 0.825 0.212 -0.897 1.237 sum -6.732 19.548 2.845 20.870 Atomic orbital electron populations 1.21855 0.96912 1.00921 1.01337 1.21417 0.94182 0.95880 1.03297 1.21733 0.97566 0.95919 0.96988 0.91703 1.21703 0.98548 0.81835 0.98297 1.47938 1.09437 1.05690 1.67953 1.16864 0.85136 0.82362 0.77324 1.90754 1.15726 1.86352 1.51063 1.20525 0.91596 0.94395 1.09533 1.22592 0.96818 0.86176 1.04344 1.45847 1.12598 1.08424 1.49187 1.22128 1.04529 0.77219 1.03504 1.20693 0.83652 0.85794 1.02297 1.84886 1.25499 1.75665 1.38057 1.70666 1.16749 1.08832 1.20929 1.22833 0.77671 1.05800 0.98476 1.22397 1.01291 0.98297 0.96217 1.20274 0.89663 0.91167 0.92288 0.93489 1.42454 1.18964 1.63967 1.10650 1.19192 0.93659 1.26536 0.96959 0.91393 1.24671 0.98450 1.01738 0.96054 1.69641 1.38099 1.48318 1.02224 0.86326 0.84602 0.79165 0.76427 1.21477 1.21911 1.21455 0.93254 0.93433 0.92751 0.90513 0.92116 0.90782 0.89770 0.78835 0.90163 0.89074 0.88965 0.74013 0.91084 0.84456 0.91263 0.93710 0.78157 0.93639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.67 37.16 0.36 -1.85 16 2 C -0.11 -1.87 5.19 -26.73 -0.14 -2.01 16 3 C -0.10 -1.82 2.14 -90.50 -0.19 -2.01 16 4 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 5 C 0.12 2.19 5.01 -3.71 -0.02 2.17 16 6 N -0.58 -10.79 2.97 -174.10 -0.52 -11.31 16 7 C 0.60 10.75 7.67 -12.60 -0.10 10.65 16 8 O -0.56 -10.93 16.33 5.24 0.09 -10.84 16 9 C -0.03 -0.49 6.71 -83.06 -0.56 -1.04 16 10 C 0.04 0.42 11.30 -16.26 -0.18 0.24 16 11 N -0.47 -4.28 3.16 -125.77 -0.40 -4.67 16 12 C 0.07 0.29 11.11 59.85 0.66 0.95 16 13 C 0.38 4.34 9.03 -89.17 -0.81 3.54 16 14 O -0.44 -3.93 13.55 -18.08 -0.25 -4.17 16 15 N -0.44 -6.59 7.70 -11.22 -0.09 -6.67 16 16 C 0.07 1.41 6.06 -3.71 -0.02 1.39 16 17 C -0.14 -2.70 5.78 -26.61 -0.15 -2.85 16 18 C 0.18 3.58 2.53 -67.89 -0.17 3.41 16 19 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 20 N -0.72 -17.48 3.72 -53.38 -0.20 -17.68 16 21 C -0.23 -6.32 9.93 -15.06 -0.15 -6.47 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 25 Si 0.90 22.43 29.55 -169.99 -5.02 17.41 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.79 6.70 -51.93 -0.35 0.44 16 32 H 0.08 1.50 7.70 -51.93 -0.40 1.10 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.51 6.64 -51.93 -0.34 1.16 16 35 H 0.08 1.52 5.76 -51.93 -0.30 1.23 16 36 H 0.19 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.08 0.21 8.14 -51.92 -0.42 -0.21 16 38 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.40 1.59 9.06 45.56 0.41 2.00 16 41 H 0.07 1.56 7.74 -51.93 -0.40 1.16 16 42 H 0.14 2.48 3.65 -78.23 -0.29 2.20 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.38 9.98 5.94 -40.82 -0.24 9.74 16 46 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 367.74 15.07 5.54 5.54 Total: -1.00 -34.52 367.74 -7.78 -42.30 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.10 Total: 11.67 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -1.56 Total: 5.63 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -0.48 Total: -67.54 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.16 Total: -15.01 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.52 -7.78 -42.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037917586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.139 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds