Wall clock time and date at job start Tue Mar 31 2020 12:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47413 * 2 1 4 4 H 1.09003 * 109.49614 * 55.00745 * 3 2 1 5 5 C 1.53185 * 109.50076 * 294.93807 * 3 2 1 6 6 N 1.46930 * 108.77706 * 185.41342 * 5 3 2 7 7 C 1.34773 * 120.63201 * 233.63106 * 6 5 3 8 8 O 1.21640 * 119.99820 * 353.83747 * 7 6 5 9 9 C 1.47245 * 120.00174 * 173.84295 * 7 6 5 10 10 C 1.36250 * 126.16446 * 172.96586 * 9 7 6 11 11 N 1.36341 * 106.88554 * 179.84418 * 10 9 7 12 12 C 1.46502 * 126.19851 * 180.15954 * 11 10 9 13 13 C 1.36168 * 107.60184 * 0.41667 * 11 10 9 14 14 O 1.35464 * 125.55096 * 179.73604 * 13 11 10 15 15 N 1.30702 * 108.89667 * 359.73990 * 13 11 10 16 16 C 1.46925 * 118.73761 * 53.60577 * 6 5 3 17 17 C 1.53186 * 108.77962 * 306.39277 * 16 6 5 18 18 C 1.53039 * 109.34051 * 54.61614 * 17 16 6 19 19 H 1.08996 * 109.48991 * 178.64777 * 18 17 16 20 20 N 1.46504 * 109.43218 * 58.68887 * 18 17 16 21 21 C 1.36942 * 119.99813 * 84.94677 * 20 18 17 22 22 H 1.07997 * 119.99777 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00022 * 180.02562 * 21 20 18 24 24 N 1.31616 * 120.00263 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00067 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47256 * 59.99678 * 25 23 21 27 27 H 1.48494 * 109.47447 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.47167 * 299.99895 * 25 23 21 29 29 H 1.08991 * 109.47501 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46657 * 300.00127 * 1 2 3 31 31 H 1.09005 * 109.47100 * 59.99282 * 1 2 3 32 32 H 1.09000 * 109.46657 * 239.99873 * 2 1 3 33 33 H 1.09005 * 109.47100 * 120.00718 * 2 1 3 34 34 H 1.09000 * 109.58406 * 305.19627 * 5 3 2 35 35 H 1.09004 * 109.58888 * 65.48357 * 5 3 2 36 36 H 1.07997 * 126.55966 * 359.97438 * 10 9 7 37 37 H 1.09007 * 109.46819 * 270.28434 * 12 11 10 38 38 H 1.08998 * 109.47541 * 30.28048 * 12 11 10 39 39 H 1.09001 * 109.47238 * 150.28936 * 12 11 10 40 40 H 0.96696 * 113.99934 * 270.02732 * 14 13 11 41 41 H 1.09004 * 109.58704 * 66.18037 * 16 6 5 42 42 H 1.08998 * 109.58690 * 186.46203 * 16 6 5 43 43 H 1.08999 * 109.50266 * 174.58694 * 17 16 6 44 44 H 1.09006 * 109.49616 * 294.65297 * 17 16 6 45 45 H 0.96999 * 120.00490 * 264.95476 * 20 18 17 46 46 H 0.96998 * 120.00464 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6058 1.9818 0.8418 5 6 1.6365 2.1275 -1.3093 6 7 2.2431 3.4651 -1.3497 7 6 1.4834 4.5575 -1.5644 8 8 0.3046 4.4342 -1.8380 9 6 2.0804 5.9000 -1.4678 10 6 1.4711 7.0758 -1.7882 11 7 2.3743 8.0683 -1.5478 12 6 2.1562 9.5034 -1.7460 13 6 3.5179 7.4836 -1.0956 14 8 4.6535 8.1369 -0.7510 15 7 3.3416 6.1894 -1.0482 16 6 3.6936 3.5893 -1.1511 17 6 4.0741 2.8879 0.1565 18 6 3.5655 1.4449 0.1242 19 1 3.8558 0.9363 1.0435 20 7 4.1496 0.7477 -1.0243 21 6 5.3876 0.1719 -0.9185 22 1 5.9330 0.2313 0.0117 23 6 5.9413 -0.4882 -2.0068 24 7 5.2764 -0.5611 -3.1403 25 14 7.6296 -1.2743 -1.8623 26 1 7.6064 -2.3036 -0.7922 27 1 7.9911 -1.9117 -3.1538 28 1 8.6334 -0.2329 -1.5257 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 1.9932 1.5390 -2.1546 35 1 0.5510 2.2147 -1.3567 36 1 0.4643 7.1983 -2.1595 37 1 2.4428 9.7776 -2.7614 38 1 1.1026 9.7357 -1.5906 39 1 2.7610 10.0646 -1.0337 40 1 5.2755 8.2567 -1.4816 41 1 4.2179 3.1199 -1.9835 42 1 3.9659 4.6433 -1.0955 43 1 5.1584 2.8890 0.2678 44 1 3.6215 3.4144 0.9968 45 1 3.6596 0.6941 -1.8597 46 1 5.6631 -1.0226 -3.9008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037917586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:38 Heat of formation + Delta-G solvation = -9.532003 kcal Electronic energy + Delta-G solvation = -28516.505453 eV Core-core repulsion = 24635.583183 eV Total energy + Delta-G solvation = -3880.922270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.28218 -41.07460 -39.11554 -38.19806 -35.96484 -35.44873 -34.88813 -33.36314 -30.94451 -30.46733 -29.88477 -28.17685 -26.53123 -25.45739 -24.96831 -23.64791 -22.46618 -22.06677 -20.94526 -19.85360 -19.36287 -19.13101 -18.18177 -17.60291 -16.91927 -16.65285 -16.51250 -16.08353 -15.92792 -15.62092 -15.34772 -15.16311 -14.99651 -14.73848 -14.52761 -14.31617 -14.06617 -13.61514 -13.53836 -13.44035 -13.08793 -12.91694 -12.89735 -12.79544 -12.62457 -12.35418 -12.24881 -12.14179 -11.81384 -11.57557 -11.42987 -11.30154 -11.10973 -10.90365 -10.84342 -10.23825 -9.72810 -9.38879 -8.88305 -7.85933 -5.12181 0.48526 1.03203 1.41970 1.49401 1.51700 1.57444 2.06784 2.41739 2.61557 2.77814 3.46814 3.59944 3.71232 3.85336 3.90124 4.05196 4.13014 4.14785 4.36358 4.43637 4.46318 4.48296 4.50538 4.51918 4.66192 4.72533 4.73407 4.84139 4.90332 4.99001 5.02067 5.12655 5.19347 5.22446 5.28991 5.35611 5.41555 5.53494 5.60179 5.62765 5.65127 5.86092 6.35386 6.45280 6.65399 6.68995 7.19111 7.42337 8.18994 8.43951 9.37382 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.004006 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.533334 B = 6987.854210 C = 8512.633672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 C -0.091 4.091 4 H 0.082 0.918 5 C 0.125 3.875 6 N -0.589 5.589 7 C 0.594 3.406 8 O -0.580 6.580 9 C -0.078 4.078 10 C 0.066 3.934 11 N -0.453 5.453 12 C 0.060 3.940 13 C 0.382 3.618 14 O -0.442 6.442 15 N -0.484 5.484 16 C 0.086 3.914 17 C -0.132 4.132 18 C 0.171 3.829 19 H 0.045 0.955 20 N -0.723 5.723 21 C -0.229 4.229 22 H 0.073 0.927 23 C -0.074 4.074 24 N -0.970 5.970 25 Si 0.966 3.034 26 H -0.281 1.281 27 H -0.300 1.300 28 H -0.280 1.280 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.221 0.779 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.425 0.575 41 H 0.031 0.969 42 H 0.156 0.844 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.373 0.627 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.055 22.496 4.172 24.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.142 4.142 3 C -0.111 4.111 4 H 0.100 0.900 5 C 0.002 3.998 6 N -0.318 5.318 7 C 0.384 3.616 8 O -0.462 6.462 9 C -0.205 4.205 10 C -0.073 4.073 11 N -0.146 5.146 12 C -0.079 4.079 13 C 0.081 3.919 14 O -0.245 6.245 15 N -0.214 5.214 16 C -0.036 4.036 17 C -0.173 4.173 18 C 0.063 3.937 19 H 0.063 0.937 20 N -0.364 5.364 21 C -0.361 4.361 22 H 0.091 0.909 23 C -0.266 4.266 24 N -0.621 5.621 25 Si 0.797 3.203 26 H -0.207 1.207 27 H -0.226 1.226 28 H -0.207 1.207 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.237 0.763 37 H 0.119 0.881 38 H 0.130 0.870 39 H 0.122 0.878 40 H 0.286 0.714 41 H 0.049 0.951 42 H 0.172 0.828 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.206 0.794 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.040 22.033 4.931 23.967 hybrid contribution 0.964 -0.411 -1.226 1.613 sum -7.075 21.621 3.705 23.049 Atomic orbital electron populations 1.21782 0.94460 1.02025 1.01961 1.21334 0.96300 0.94870 1.01731 1.21640 0.95657 0.96629 0.97146 0.90012 1.21553 0.98675 0.82003 0.97556 1.47960 1.09206 1.05954 1.68666 1.17277 0.84897 0.83259 0.76185 1.90718 1.16509 1.86937 1.52043 1.20196 0.92808 0.93960 1.13532 1.22934 0.97444 0.85354 1.01569 1.46040 1.11165 1.10065 1.47376 1.22551 1.06321 0.73908 1.05164 1.20588 0.84814 0.85318 1.01179 1.84855 1.25234 1.74959 1.39488 1.70249 1.17139 1.11295 1.22766 1.22704 0.77820 1.06468 0.96623 1.22263 1.00522 0.97473 0.96995 1.20468 0.91335 0.91347 0.90585 0.93745 1.42544 1.18278 1.64186 1.11353 1.19553 0.94437 1.25295 0.96835 0.90924 1.25403 1.01973 1.03226 0.95956 1.69812 1.39655 1.49797 1.02831 0.85311 0.80700 0.78344 0.75991 1.20736 1.22627 1.20680 0.91980 0.91782 0.93058 0.93705 0.91961 0.93602 0.89190 0.76295 0.88059 0.86986 0.87845 0.71405 0.95058 0.82829 0.92469 0.91963 0.79404 0.94395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.67 71.98 0.70 -3.34 16 2 C -0.10 -3.59 5.19 30.59 0.16 -3.43 16 3 C -0.09 -3.27 2.14 -10.72 -0.02 -3.29 16 4 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 5 C 0.12 4.77 5.01 86.36 0.43 5.21 16 6 N -0.59 -22.44 2.97 -822.98 -2.45 -24.88 16 7 C 0.59 21.54 7.67 86.61 0.66 22.20 16 8 O -0.58 -22.63 16.33 -4.16 -0.07 -22.70 16 9 C -0.08 -2.31 6.71 40.40 0.27 -2.04 16 10 C 0.07 1.34 11.30 83.53 0.94 2.28 16 11 N -0.45 -6.89 3.16 -662.73 -2.09 -8.98 16 12 C 0.06 0.25 11.11 127.77 1.42 1.67 16 13 C 0.38 8.01 9.03 179.84 1.62 9.64 16 14 O -0.44 -6.74 13.55 -87.62 -1.19 -7.93 16 15 N -0.48 -14.01 7.70 -303.16 -2.34 -16.35 16 16 C 0.09 3.38 6.06 86.36 0.52 3.91 16 17 C -0.13 -5.10 5.78 30.67 0.18 -4.93 16 18 C 0.17 7.09 2.53 45.02 0.11 7.20 16 19 H 0.04 1.86 8.08 -2.39 -0.02 1.84 16 20 N -0.72 -36.54 3.72 -322.80 -1.20 -37.74 16 21 C -0.23 -12.75 9.93 84.03 0.83 -11.92 16 22 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 23 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 24 N -0.97 -60.10 13.06 21.65 0.28 -59.81 16 25 Si 0.97 46.96 29.55 68.60 2.03 48.99 16 26 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 27 H -0.30 -14.78 7.11 99.48 0.71 -14.08 16 28 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.45 6.70 -2.38 -0.02 1.44 16 32 H 0.04 1.83 7.70 -2.39 -0.02 1.81 16 33 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.05 2.00 6.64 -2.39 -0.02 1.98 16 35 H 0.09 3.32 5.76 -2.39 -0.01 3.30 16 36 H 0.22 3.16 8.06 -2.91 -0.02 3.13 16 37 H 0.10 0.08 8.14 -2.38 -0.02 0.06 16 38 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.43 2.22 9.06 -74.06 -0.67 1.55 16 41 H 0.03 1.45 7.74 -2.38 -0.02 1.44 16 42 H 0.16 5.67 3.65 -54.32 -0.20 5.47 16 43 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 45 H 0.37 20.50 5.94 -92.71 -0.55 19.95 16 46 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -77.17 367.74 0.89 -76.28 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: -0.39 Total: 33.74 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 8.30 Total: 19.37 kcal Atomic # 7 Polarization: -139.97 SS G_CDS: -7.79 Total: -147.76 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -1.26 Total: -30.63 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -77.17 0.89 -76.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037917586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.753 kcal (2) G-P(sol) polarization free energy of solvation -77.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds