Wall clock time and date at job start Tue Mar 31 2020 12:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47432 * 2 1 4 4 H 1.08996 * 109.50276 * 304.94148 * 3 2 1 5 5 C 1.53193 * 109.49607 * 65.00137 * 3 2 1 6 6 N 1.46931 * 108.77879 * 174.58951 * 5 3 2 7 7 C 1.34772 * 120.63385 * 126.37118 * 6 5 3 8 8 O 1.21634 * 119.99884 * 352.74869 * 7 6 5 9 9 C 1.47253 * 120.00104 * 172.75292 * 7 6 5 10 10 C 1.36245 * 126.16296 * 172.70062 * 9 7 6 11 11 N 1.36341 * 106.88630 * 179.87952 * 10 9 7 12 12 C 1.46503 * 126.19939 * 180.14598 * 11 10 9 13 13 C 1.36172 * 107.59868 * 0.38873 * 11 10 9 14 14 O 1.35462 * 125.55043 * 179.73526 * 13 11 10 15 15 N 1.30699 * 108.89945 * 359.75770 * 13 11 10 16 16 C 1.46935 * 118.73445 * 306.39340 * 6 5 3 17 17 C 1.53192 * 108.77648 * 53.60819 * 16 6 5 18 18 C 1.53041 * 109.30872 * 305.36192 * 17 16 6 19 19 H 1.08992 * 109.46464 * 301.34306 * 18 17 16 20 20 N 1.46501 * 109.45873 * 181.38453 * 18 17 16 21 21 C 1.36943 * 119.99458 * 84.93260 * 20 18 17 22 22 H 1.07994 * 120.00506 * 359.97438 * 21 20 18 23 23 C 1.38819 * 119.99496 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00391 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99716 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47332 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47338 * 119.99482 * 25 23 21 28 28 H 1.48499 * 109.47120 * 239.99584 * 25 23 21 29 29 H 1.09004 * 109.46795 * 299.99801 * 1 2 3 30 30 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47231 * 59.99614 * 1 2 3 32 32 H 1.09006 * 109.47445 * 120.00325 * 2 1 3 33 33 H 1.09002 * 109.47215 * 239.99882 * 2 1 3 34 34 H 1.08995 * 109.58953 * 294.37330 * 5 3 2 35 35 H 1.09000 * 109.58949 * 54.65906 * 5 3 2 36 36 H 1.08003 * 126.55701 * 0.02562 * 10 9 7 37 37 H 1.09003 * 109.46889 * 270.26095 * 12 11 10 38 38 H 1.08992 * 109.47183 * 30.26344 * 12 11 10 39 39 H 1.09001 * 109.47187 * 150.26409 * 12 11 10 40 40 H 0.96694 * 113.99816 * 270.00549 * 14 13 11 41 41 H 1.09000 * 109.58003 * 173.39573 * 16 6 5 42 42 H 1.08995 * 109.58403 * 293.67611 * 16 6 5 43 43 H 1.08991 * 109.49930 * 65.31171 * 17 16 6 44 44 H 1.08996 * 109.49595 * 185.41307 * 17 16 6 45 45 H 0.96996 * 120.00746 * 264.93857 * 20 18 17 46 46 H 0.96997 * 119.99758 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6065 1.9817 -0.8422 5 6 1.6351 2.1279 1.3088 6 7 2.2415 3.4656 1.3494 7 6 1.4816 4.5579 1.5631 8 8 0.2696 4.4592 1.5929 9 6 2.1184 5.8709 1.7602 10 6 1.4780 7.0704 1.8455 11 7 2.4388 8.0201 2.0297 12 6 2.2146 9.4602 2.1784 13 6 3.6448 7.3881 2.0449 14 8 4.8479 7.9908 2.2009 15 7 3.4527 6.1054 1.8839 16 6 3.6923 3.5898 1.1523 17 6 4.0741 2.8880 -0.1548 18 6 3.5656 1.4449 -0.1216 19 1 3.9989 0.9267 0.7337 20 7 3.9577 0.7608 -1.3563 21 6 5.1961 0.1849 -1.4563 22 1 5.8839 0.2355 -0.6252 23 6 5.5679 -0.4629 -2.6264 24 7 4.7300 -0.5241 -3.6396 25 14 7.2569 -1.2490 -2.7625 26 1 8.0027 -1.0425 -1.4950 27 1 7.1066 -2.7042 -3.0174 28 1 8.0045 -0.6248 -3.8835 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 0.5498 2.2173 1.3539 35 1 1.9886 1.5383 2.1547 36 1 0.4128 7.2368 1.7820 37 1 2.2334 9.9341 1.1969 38 1 1.2447 9.6306 2.6456 39 1 2.9989 9.8874 2.8032 40 1 5.2606 8.2658 1.3708 41 1 3.9641 4.6437 1.0941 42 1 4.2157 3.1229 1.9866 43 1 3.6219 3.4138 -0.9956 44 1 5.1585 2.8891 -0.2650 45 1 3.3402 0.7157 -2.1030 46 1 4.9897 -0.9771 -4.4570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037917587.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:42 Heat of formation + Delta-G solvation = 11.197612 kcal Electronic energy + Delta-G solvation = -28046.411119 eV Core-core repulsion = 24166.387753 eV Total energy + Delta-G solvation = -3880.023367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.47768 -39.73015 -37.79169 -37.37022 -34.88442 -34.22182 -33.60048 -31.58789 -29.51267 -29.32489 -28.78486 -27.43590 -25.16594 -23.73820 -23.21190 -22.07754 -21.73344 -20.65806 -19.91453 -19.22679 -18.41279 -17.28059 -16.98187 -16.71965 -15.89188 -15.69961 -15.03529 -14.82064 -14.69670 -14.56825 -13.95507 -13.77580 -13.56188 -13.29229 -13.27234 -13.07504 -13.03194 -12.79452 -12.46695 -12.26005 -11.97911 -11.81668 -11.47036 -11.16887 -10.86588 -10.83117 -10.57798 -10.28776 -10.23113 -10.10520 -10.08145 -10.00558 -9.71806 -9.47026 -9.40291 -8.81520 -8.75932 -8.21767 -6.86447 -5.70781 -2.98338 1.31669 1.85302 2.11371 3.13904 3.46466 3.51451 3.52739 3.54441 3.56556 4.24106 4.34911 4.59695 4.64127 4.80014 4.89103 5.12784 5.26512 5.37182 5.48202 5.54938 5.59952 5.70123 5.71627 5.76231 5.82019 5.89603 6.00098 6.09886 6.19899 6.24091 6.28028 6.41255 6.50480 6.53679 6.60353 6.62220 6.75587 6.86752 6.98589 7.08948 7.19905 7.26559 7.40710 7.74985 7.76808 8.38714 8.47934 9.59211 10.18214 10.53375 11.51991 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014062 B = 0.003440 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.668752 B = 8137.601145 C = 9729.055179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.069 0.931 5 C 0.118 3.882 6 N -0.588 5.588 7 C 0.600 3.400 8 O -0.553 6.553 9 C -0.036 4.036 10 C 0.040 3.960 11 N -0.465 5.465 12 C 0.068 3.932 13 C 0.376 3.624 14 O -0.440 6.440 15 N -0.445 5.445 16 C 0.083 3.917 17 C -0.148 4.148 18 C 0.182 3.818 19 H 0.047 0.953 20 N -0.721 5.721 21 C -0.232 4.232 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.903 3.097 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.195 0.805 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.404 0.596 41 H 0.130 0.870 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.383 0.617 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.575 20.047 12.208 24.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.087 0.913 5 C -0.004 4.004 6 N -0.318 5.318 7 C 0.387 3.613 8 O -0.432 6.432 9 C -0.165 4.165 10 C -0.097 4.097 11 N -0.160 5.160 12 C -0.074 4.074 13 C 0.076 3.924 14 O -0.241 6.241 15 N -0.176 5.176 16 C -0.040 4.040 17 C -0.189 4.189 18 C 0.072 3.928 19 H 0.065 0.935 20 N -0.362 5.362 21 C -0.363 4.363 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.221 1.221 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.212 0.788 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.261 0.739 41 H 0.147 0.853 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.217 0.783 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.392 19.389 12.854 24.125 hybrid contribution 0.581 0.401 -0.936 1.173 sum -5.811 19.790 11.918 23.821 Atomic orbital electron populations 1.21841 0.96864 1.00915 1.01320 1.21451 0.94324 0.95818 1.03394 1.21760 0.97695 0.96098 0.96744 0.91251 1.21779 0.99321 0.81485 0.97843 1.47946 1.09270 1.05975 1.68625 1.16856 0.85633 0.82113 0.76665 1.90767 1.13139 1.85535 1.53809 1.20471 0.89016 0.94360 1.12645 1.22615 0.95468 0.87219 1.04376 1.45858 1.07069 1.08828 1.54231 1.22142 1.04669 0.76824 1.03791 1.20610 0.80556 0.85825 1.05398 1.84887 1.26543 1.77225 1.35447 1.70848 1.16206 1.11013 1.19539 1.22682 0.78127 1.05444 0.97734 1.22630 1.01807 0.98737 0.95710 1.20233 0.90741 0.90873 0.90986 0.93540 1.42432 1.16413 1.64519 1.12800 1.19285 0.91784 1.26767 0.98511 0.91204 1.24713 0.98095 1.01788 0.96489 1.69672 1.35164 1.48664 1.04711 0.86164 0.84182 0.78862 0.77293 1.20600 1.22016 1.22054 0.93196 0.93270 0.93003 0.92503 0.89861 0.89207 0.91664 0.78789 0.90075 0.89020 0.88912 0.73944 0.85309 0.92312 0.92695 0.90907 0.78293 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.67 37.16 0.36 -1.86 16 2 C -0.11 -1.91 5.31 -26.74 -0.14 -2.05 16 3 C -0.10 -1.82 1.93 -90.50 -0.17 -1.99 16 4 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 5 C 0.12 1.90 5.33 -3.71 -0.02 1.88 16 6 N -0.59 -9.64 2.97 -174.09 -0.52 -10.15 16 7 C 0.60 9.84 7.67 -12.60 -0.10 9.74 16 8 O -0.55 -10.02 16.31 5.25 0.09 -9.94 16 9 C -0.04 -0.51 6.65 -83.06 -0.55 -1.06 16 10 C 0.04 0.41 11.30 -16.26 -0.18 0.23 16 11 N -0.47 -3.87 3.16 -125.77 -0.40 -4.27 16 12 C 0.07 0.24 11.11 59.85 0.66 0.90 16 13 C 0.38 3.96 9.03 -89.17 -0.81 3.16 16 14 O -0.44 -3.51 13.55 -18.08 -0.24 -3.75 16 15 N -0.45 -6.04 7.79 -11.22 -0.09 -6.13 16 16 C 0.08 1.34 6.09 -3.71 -0.02 1.32 16 17 C -0.15 -2.76 5.66 -26.61 -0.15 -2.91 16 18 C 0.18 3.67 2.19 -67.89 -0.15 3.52 16 19 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 20 N -0.72 -17.90 4.33 -53.38 -0.23 -18.14 16 21 C -0.23 -6.38 9.93 -15.05 -0.15 -6.53 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 25 Si 0.90 22.49 29.55 -169.99 -5.02 17.46 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 H 0.05 0.67 6.70 -51.93 -0.35 0.32 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.68 7.22 -51.93 -0.37 1.30 16 34 H 0.09 1.45 5.72 -51.93 -0.30 1.15 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.20 1.54 8.06 -52.48 -0.42 1.12 16 37 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 40 H 0.40 1.25 9.06 45.56 0.41 1.66 16 41 H 0.13 2.04 4.11 -61.25 -0.25 1.79 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.38 10.23 7.51 -40.82 -0.31 9.92 16 46 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -34.98 371.56 -7.81 -42.79 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -6.20 Total: 10.16 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -1.52 Total: 3.82 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: -0.51 Total: -66.14 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.16 Total: -13.69 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.98 -7.81 -42.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037917587.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.992 kcal (2) G-P(sol) polarization free energy of solvation -34.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds