Wall clock time and date at job start Tue Mar 31 2020 12:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47432 * 2 1 4 4 H 1.08996 * 109.50276 * 304.94148 * 3 2 1 5 5 C 1.53193 * 109.49607 * 65.00137 * 3 2 1 6 6 N 1.46931 * 108.77879 * 174.58951 * 5 3 2 7 7 C 1.34772 * 120.63385 * 126.37118 * 6 5 3 8 8 O 1.21634 * 119.99884 * 352.74869 * 7 6 5 9 9 C 1.47253 * 120.00104 * 172.75292 * 7 6 5 10 10 C 1.36245 * 126.16296 * 172.70062 * 9 7 6 11 11 N 1.36341 * 106.88630 * 179.87952 * 10 9 7 12 12 C 1.46503 * 126.19939 * 180.14598 * 11 10 9 13 13 C 1.36172 * 107.59868 * 0.38873 * 11 10 9 14 14 O 1.35462 * 125.55043 * 179.73526 * 13 11 10 15 15 N 1.30699 * 108.89945 * 359.75770 * 13 11 10 16 16 C 1.46935 * 118.73445 * 306.39340 * 6 5 3 17 17 C 1.53192 * 108.77648 * 53.60819 * 16 6 5 18 18 C 1.53041 * 109.30872 * 305.36192 * 17 16 6 19 19 H 1.08992 * 109.46464 * 301.34306 * 18 17 16 20 20 N 1.46501 * 109.45873 * 181.38453 * 18 17 16 21 21 C 1.36943 * 119.99458 * 84.93260 * 20 18 17 22 22 H 1.07994 * 120.00506 * 359.97438 * 21 20 18 23 23 C 1.38819 * 119.99496 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00391 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99716 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47332 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47338 * 119.99482 * 25 23 21 28 28 H 1.48499 * 109.47120 * 239.99584 * 25 23 21 29 29 H 1.09004 * 109.46795 * 299.99801 * 1 2 3 30 30 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47231 * 59.99614 * 1 2 3 32 32 H 1.09006 * 109.47445 * 120.00325 * 2 1 3 33 33 H 1.09002 * 109.47215 * 239.99882 * 2 1 3 34 34 H 1.08995 * 109.58953 * 294.37330 * 5 3 2 35 35 H 1.09000 * 109.58949 * 54.65906 * 5 3 2 36 36 H 1.08003 * 126.55701 * 0.02562 * 10 9 7 37 37 H 1.09003 * 109.46889 * 270.26095 * 12 11 10 38 38 H 1.08992 * 109.47183 * 30.26344 * 12 11 10 39 39 H 1.09001 * 109.47187 * 150.26409 * 12 11 10 40 40 H 0.96694 * 113.99816 * 270.00549 * 14 13 11 41 41 H 1.09000 * 109.58003 * 173.39573 * 16 6 5 42 42 H 1.08995 * 109.58403 * 293.67611 * 16 6 5 43 43 H 1.08991 * 109.49930 * 65.31171 * 17 16 6 44 44 H 1.08996 * 109.49595 * 185.41307 * 17 16 6 45 45 H 0.96996 * 120.00746 * 264.93857 * 20 18 17 46 46 H 0.96997 * 119.99758 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6065 1.9817 -0.8422 5 6 1.6351 2.1279 1.3088 6 7 2.2415 3.4656 1.3494 7 6 1.4816 4.5579 1.5631 8 8 0.2696 4.4592 1.5929 9 6 2.1184 5.8709 1.7602 10 6 1.4780 7.0704 1.8455 11 7 2.4388 8.0201 2.0297 12 6 2.2146 9.4602 2.1784 13 6 3.6448 7.3881 2.0449 14 8 4.8479 7.9908 2.2009 15 7 3.4527 6.1054 1.8839 16 6 3.6923 3.5898 1.1523 17 6 4.0741 2.8880 -0.1548 18 6 3.5656 1.4449 -0.1216 19 1 3.9989 0.9267 0.7337 20 7 3.9577 0.7608 -1.3563 21 6 5.1961 0.1849 -1.4563 22 1 5.8839 0.2355 -0.6252 23 6 5.5679 -0.4629 -2.6264 24 7 4.7300 -0.5241 -3.6396 25 14 7.2569 -1.2490 -2.7625 26 1 8.0027 -1.0425 -1.4950 27 1 7.1066 -2.7042 -3.0174 28 1 8.0045 -0.6248 -3.8835 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 0.5498 2.2173 1.3539 35 1 1.9886 1.5383 2.1547 36 1 0.4128 7.2368 1.7820 37 1 2.2334 9.9341 1.1969 38 1 1.2447 9.6306 2.6456 39 1 2.9989 9.8874 2.8032 40 1 5.2606 8.2658 1.3708 41 1 3.9641 4.6437 1.0941 42 1 4.2157 3.1229 1.9866 43 1 3.6219 3.4138 -0.9956 44 1 5.1585 2.8891 -0.2650 45 1 3.3402 0.7157 -2.1030 46 1 4.9897 -0.9771 -4.4570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037917587.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:41 Heat of formation + Delta-G solvation = -14.665740 kcal Electronic energy + Delta-G solvation = -28047.532638 eV Core-core repulsion = 24166.387753 eV Total energy + Delta-G solvation = -3881.144886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.27182 -41.03029 -39.05734 -38.19477 -36.21135 -35.49920 -34.88610 -33.42671 -31.04008 -30.51774 -29.91998 -28.16405 -26.67502 -25.23307 -24.67340 -23.34830 -22.45714 -22.14326 -21.19934 -20.43897 -19.27104 -19.03414 -18.22852 -17.65426 -16.91873 -16.81112 -16.52315 -16.16535 -15.67914 -15.50998 -15.31954 -15.28824 -15.01835 -14.69020 -14.50068 -14.40883 -13.98177 -13.63775 -13.58311 -13.42221 -13.11822 -13.02663 -12.89789 -12.85260 -12.66104 -12.50569 -12.14389 -12.04865 -11.82641 -11.58898 -11.49644 -11.34232 -11.07675 -10.98463 -10.84644 -10.40351 -9.77386 -9.43416 -8.92708 -7.89573 -5.16955 0.47935 1.03475 1.42568 1.48764 1.48949 1.59038 2.01852 2.40737 2.59124 2.76816 3.43210 3.58114 3.70813 3.81049 3.85301 4.01009 4.10935 4.18146 4.35731 4.38031 4.39711 4.42694 4.47048 4.53614 4.67505 4.72705 4.80260 4.82187 4.86369 4.92439 4.99635 5.03822 5.11017 5.17611 5.31010 5.39196 5.42754 5.53127 5.56967 5.60106 5.64240 5.79713 6.31867 6.39784 6.63795 6.65555 7.16961 7.38264 8.13967 8.38717 9.34194 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014062 B = 0.003440 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.668752 B = 8137.601145 C = 9729.055179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.091 4.091 4 H 0.052 0.948 5 C 0.124 3.876 6 N -0.595 5.595 7 C 0.598 3.402 8 O -0.577 6.577 9 C -0.079 4.079 10 C 0.064 3.936 11 N -0.454 5.454 12 C 0.060 3.940 13 C 0.380 3.620 14 O -0.442 6.442 15 N -0.483 5.483 16 C 0.096 3.904 17 C -0.136 4.136 18 C 0.179 3.821 19 H 0.044 0.956 20 N -0.730 5.730 21 C -0.229 4.229 22 H 0.075 0.925 23 C -0.077 4.077 24 N -0.970 5.970 25 Si 0.968 3.032 26 H -0.266 1.266 27 H -0.296 1.296 28 H -0.296 1.296 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.219 0.781 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.425 0.575 41 H 0.141 0.859 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.060 0.940 45 H 0.371 0.629 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.585 22.213 13.973 27.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.111 4.111 4 H 0.070 0.930 5 C 0.002 3.998 6 N -0.325 5.325 7 C 0.387 3.613 8 O -0.458 6.458 9 C -0.206 4.206 10 C -0.076 4.076 11 N -0.148 5.148 12 C -0.080 4.080 13 C 0.079 3.921 14 O -0.246 6.246 15 N -0.214 5.214 16 C -0.027 4.027 17 C -0.177 4.177 18 C 0.070 3.930 19 H 0.062 0.938 20 N -0.369 5.369 21 C -0.361 4.361 22 H 0.093 0.907 23 C -0.269 4.269 24 N -0.622 5.622 25 Si 0.798 3.202 26 H -0.190 1.190 27 H -0.223 1.223 28 H -0.223 1.223 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.235 0.765 37 H 0.119 0.881 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.286 0.714 41 H 0.157 0.843 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.202 0.798 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.378 21.615 14.660 26.885 hybrid contribution 0.581 -0.104 -1.422 1.540 sum -5.797 21.511 13.238 25.915 Atomic orbital electron populations 1.21772 0.94621 1.01962 1.01820 1.21353 0.96273 0.94921 1.01905 1.21606 0.95572 0.96628 0.97292 0.92992 1.21701 0.99521 0.81676 0.96926 1.47993 1.09229 1.06235 1.69039 1.17227 0.85430 0.82897 0.75740 1.90734 1.14018 1.86085 1.54977 1.20219 0.89802 0.94207 1.16421 1.22949 0.96546 0.86458 1.01631 1.46058 1.05812 1.10394 1.52504 1.22540 1.06210 0.73758 1.05468 1.20577 0.81793 0.85515 1.04216 1.84855 1.25703 1.76820 1.37201 1.70554 1.16336 1.13185 1.21308 1.22570 0.78278 1.05822 0.95994 1.22431 1.00704 0.97665 0.96858 1.20422 0.92592 0.91103 0.88848 0.93834 1.42580 1.15519 1.64943 1.13852 1.19628 0.92547 1.25591 0.98337 0.90735 1.25482 1.01670 1.03240 0.96468 1.69832 1.37028 1.50170 1.05152 0.85138 0.80155 0.77391 0.77503 1.19036 1.22345 1.22350 0.91622 0.91983 0.93519 0.91774 0.93435 0.88915 0.90317 0.76475 0.88135 0.87049 0.87852 0.71414 0.84280 0.91824 0.94256 0.92127 0.79753 0.94272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 9.67 71.98 0.70 -3.42 16 2 C -0.11 -3.67 5.31 30.59 0.16 -3.51 16 3 C -0.09 -3.26 1.93 -10.72 -0.02 -3.28 16 4 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 5 C 0.12 3.93 5.33 86.36 0.46 4.39 16 6 N -0.60 -19.35 2.97 -822.95 -2.45 -21.79 16 7 C 0.60 19.33 7.67 86.61 0.66 19.99 16 8 O -0.58 -20.58 16.31 -4.14 -0.07 -20.65 16 9 C -0.08 -2.12 6.65 40.40 0.27 -1.85 16 10 C 0.06 1.17 11.30 83.53 0.94 2.11 16 11 N -0.45 -6.22 3.16 -662.73 -2.09 -8.32 16 12 C 0.06 0.19 11.11 127.77 1.42 1.61 16 13 C 0.38 7.20 9.03 179.84 1.62 8.82 16 14 O -0.44 -5.95 13.55 -87.60 -1.19 -7.14 16 15 N -0.48 -12.54 7.79 -303.16 -2.36 -14.90 16 16 C 0.10 3.10 6.09 86.36 0.53 3.63 16 17 C -0.14 -5.17 5.66 30.67 0.17 -5.00 16 18 C 0.18 7.37 2.19 45.02 0.10 7.47 16 19 H 0.04 1.83 8.08 -2.39 -0.02 1.81 16 20 N -0.73 -37.40 4.33 -322.81 -1.40 -38.79 16 21 C -0.23 -12.79 9.93 84.03 0.83 -11.96 16 22 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 23 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 24 N -0.97 -60.24 13.06 21.65 0.28 -59.96 16 25 Si 0.97 46.83 29.55 68.60 2.03 48.86 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 28 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 29 H 0.06 1.67 6.70 -2.38 -0.02 1.65 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.05 1.99 7.22 -2.39 -0.02 1.97 16 34 H 0.09 2.92 5.72 -2.39 -0.01 2.91 16 35 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.22 2.81 8.06 -2.91 -0.02 2.78 16 37 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.43 1.53 9.06 -74.06 -0.67 0.86 16 41 H 0.14 4.37 4.11 -20.79 -0.09 4.28 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 43 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.37 20.69 7.51 -92.71 -0.70 20.00 16 46 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -77.18 371.56 0.64 -76.54 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.43 Total: 31.14 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 8.32 Total: 15.01 kcal Atomic # 7 Polarization: -135.75 SS G_CDS: -8.02 Total: -143.77 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -1.25 Total: -27.79 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -77.18 0.64 -76.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037917587.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.875 kcal (2) G-P(sol) polarization free energy of solvation -77.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds