Wall clock time and date at job start Tue Mar 31 2020 12:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47252 * 2 1 4 4 H 1.08998 * 109.50089 * 54.93246 * 3 2 1 5 5 C 1.52766 * 109.55910 * 294.96136 * 3 2 1 6 6 N 1.46922 * 109.00423 * 185.55293 * 5 3 2 7 7 C 1.34777 * 120.63244 * 233.58279 * 6 5 3 8 8 O 1.21278 * 119.99854 * 359.72887 * 7 6 5 9 9 C 1.50703 * 120.00161 * 179.72194 * 7 6 5 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 6 11 11 N 1.29956 * 125.29948 * 90.02524 * 10 9 7 12 12 O 1.41876 * 107.41055 * 179.97438 * 11 10 9 13 13 N 1.41881 * 106.38811 * 0.02562 * 12 11 10 14 14 C 1.29952 * 107.41376 * 359.71526 * 13 12 11 15 15 C 1.50697 * 125.30515 * 180.24636 * 14 13 12 16 16 C 1.46926 * 118.74006 * 53.31495 * 6 5 3 17 17 C 1.53197 * 108.77484 * 306.64082 * 16 6 5 18 18 C 1.53037 * 109.49688 * 175.00301 * 3 2 1 19 19 H 1.09004 * 109.44815 * 301.32701 * 18 3 2 20 20 N 1.46500 * 109.46359 * 61.28827 * 18 3 2 21 21 C 1.36941 * 119.99941 * 205.06683 * 20 18 3 22 22 H 1.07998 * 120.00247 * 0.02562 * 21 20 18 23 23 C 1.38815 * 119.99603 * 180.02562 * 21 20 18 24 24 N 1.31619 * 120.00024 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99832 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47099 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46986 * 120.00125 * 25 23 21 28 28 H 1.48498 * 109.47819 * 240.00323 * 25 23 21 29 29 H 1.08999 * 109.47097 * 300.00591 * 1 2 3 30 30 H 1.08998 * 109.47092 * 60.00207 * 1 2 3 31 31 H 1.08997 * 109.47461 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47097 * 239.99409 * 2 1 3 33 33 H 1.09002 * 109.46645 * 119.99597 * 2 1 3 34 34 H 1.09003 * 109.51011 * 65.67521 * 5 3 2 35 35 H 1.08996 * 109.43207 * 305.38992 * 5 3 2 36 36 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 37 37 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 38 38 H 1.08996 * 109.47223 * 270.22932 * 15 14 13 39 39 H 1.09000 * 109.46997 * 30.22768 * 15 14 13 40 40 H 1.09003 * 109.47152 * 150.22576 * 15 14 13 41 41 H 1.09001 * 109.59151 * 66.42410 * 16 6 5 42 42 H 1.09005 * 109.59202 * 186.71064 * 16 6 5 43 43 H 1.09000 * 109.49544 * 174.58699 * 17 16 6 44 44 H 1.08997 * 109.49415 * 294.65077 * 17 16 6 45 45 H 0.96993 * 120.00068 * 25.07314 * 20 18 3 46 46 H 0.97003 * 119.99993 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9823 0.8409 5 6 1.6378 2.1272 -1.3050 6 7 2.2452 3.4642 -1.3509 7 6 1.4858 4.5564 -1.5675 8 8 0.2898 4.4405 -1.7318 9 6 2.1228 5.9216 -1.6055 10 6 1.0639 6.9631 -1.8606 11 7 0.3836 7.5828 -0.9430 12 8 -0.5020 8.4749 -1.6008 13 7 -0.2720 8.3144 -2.9916 14 6 0.6612 7.4208 -3.1308 15 6 1.2223 6.9451 -4.4461 16 6 3.6953 3.5886 -1.1500 17 6 4.0737 2.8880 0.1587 18 6 3.5652 1.4450 0.1257 19 1 3.8544 0.9369 1.0457 20 7 4.1507 0.7473 -1.0218 21 6 5.3880 0.1704 -0.9139 22 1 5.9320 0.2294 0.0172 23 6 5.9429 -0.4902 -2.0014 24 7 5.2801 -0.5616 -3.1363 25 14 7.6309 -1.2766 -1.8545 26 1 8.1621 -1.0564 -0.4853 27 1 7.5220 -2.7346 -2.1142 28 1 8.5504 -0.6644 -2.8470 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 0.5524 2.2172 -1.3494 35 1 1.9923 1.5357 -2.1491 36 1 2.8648 5.9544 -2.4033 37 1 2.6074 6.1231 -0.6501 38 1 0.6420 6.0940 -4.8021 39 1 1.1694 7.7521 -5.1768 40 1 2.2615 6.6452 -4.3106 41 1 4.2211 3.1187 -1.9812 42 1 3.9675 4.6427 -1.0947 43 1 5.1579 2.8893 0.2718 44 1 3.6198 3.4151 0.9979 45 1 3.6620 0.6941 -1.8580 46 1 5.6680 -1.0229 -3.8963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037955410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:02 Heat of formation + Delta-G solvation = 58.973056 kcal Electronic energy + Delta-G solvation = -28249.565748 eV Core-core repulsion = 24371.614080 eV Total energy + Delta-G solvation = -3877.951668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.70924 -40.18831 -38.02579 -34.78042 -34.58853 -33.85399 -33.52709 -31.80211 -30.15702 -29.46971 -28.96068 -28.24041 -25.10823 -23.92854 -23.58229 -22.70542 -21.18180 -20.87265 -19.64641 -18.36884 -17.58475 -17.24056 -16.97044 -16.14354 -15.82212 -15.52703 -14.84783 -14.55108 -14.46852 -14.28015 -14.05733 -13.67670 -13.62595 -13.57354 -13.34227 -13.21456 -13.07183 -12.65462 -12.41403 -12.34179 -11.94886 -11.87824 -11.76702 -11.47754 -11.18472 -11.06363 -11.05569 -10.89176 -10.81235 -10.79145 -10.39806 -10.34329 -10.20624 -9.88091 -9.77068 -9.63211 -9.01170 -8.40296 -7.06201 -5.87221 -3.15832 0.37522 1.74356 2.46693 2.53669 2.89506 3.14087 3.35464 3.42362 3.44128 3.65491 4.29284 4.44470 4.50408 4.55976 4.86117 4.97241 5.00558 5.07714 5.17044 5.18565 5.24796 5.37462 5.39218 5.44023 5.51108 5.61075 5.63329 5.70538 5.73400 5.84097 5.98615 6.07006 6.08460 6.25610 6.28628 6.34361 6.47976 6.51656 6.61745 6.67879 6.75728 6.84517 6.91012 7.48800 7.62037 8.11749 8.31205 9.43339 9.99049 10.34176 11.35032 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.003332 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.179833 B = 8401.387167 C = 9259.573740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.104 4.104 4 H 0.066 0.934 5 C 0.119 3.881 6 N -0.594 5.594 7 C 0.519 3.481 8 O -0.545 6.545 9 C -0.082 4.082 10 C 0.100 3.900 11 N -0.264 5.264 12 O 0.024 5.976 13 N -0.281 5.281 14 C 0.089 3.911 15 C -0.094 4.094 16 C 0.109 3.891 17 C -0.151 4.151 18 C 0.178 3.822 19 H 0.052 0.948 20 N -0.719 5.719 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.010 4.010 24 N -0.931 5.931 25 Si 0.903 3.097 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.292 1.292 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.384 0.616 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.897 11.535 1.326 12.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.124 4.124 4 H 0.084 0.916 5 C -0.003 4.003 6 N -0.326 5.326 7 C 0.304 3.696 8 O -0.423 6.423 9 C -0.122 4.122 10 C -0.084 4.084 11 N -0.006 5.006 12 O -0.117 6.117 13 N -0.027 5.027 14 C -0.093 4.093 15 C -0.152 4.152 16 C -0.013 4.013 17 C -0.192 4.192 18 C 0.068 3.932 19 H 0.070 0.930 20 N -0.361 5.361 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.206 4.206 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.219 0.781 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.315 12.291 1.924 13.952 hybrid contribution 1.446 -0.953 -0.455 1.791 sum -4.869 11.338 1.469 12.426 Atomic orbital electron populations 1.21857 0.96797 1.01101 1.01354 1.21414 0.94277 0.95627 1.03443 1.21682 0.97447 0.96254 0.97011 0.91560 1.21653 0.98833 0.81204 0.98599 1.48086 1.08803 1.06452 1.69265 1.19904 0.86891 0.85235 0.77526 1.90731 1.14650 1.86389 1.50536 1.20426 0.95195 0.89446 1.07180 1.23816 0.97433 0.97194 0.89918 1.79908 1.00908 1.01776 1.18045 1.93375 1.53233 1.54220 1.10862 1.79896 1.13121 1.15045 0.94649 1.24519 0.93507 0.93216 0.98101 1.20610 1.02011 1.03056 0.89550 1.21845 0.78833 1.00101 1.00545 1.22535 1.02021 0.99368 0.95299 1.20219 0.89654 0.90623 0.92741 0.93024 1.42480 1.19147 1.63961 1.10511 1.19256 0.93571 1.27022 0.97074 0.91195 1.24694 0.98541 1.01386 0.96025 1.69652 1.38057 1.48039 1.02210 0.86184 0.84236 0.78975 0.77147 1.20637 1.21980 1.21965 0.93374 0.92819 0.93106 0.90443 0.91956 0.89506 0.90434 0.85360 0.85754 0.88192 0.89096 0.88734 0.89153 0.91174 0.90503 0.93186 0.78107 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.67 37.16 0.36 -1.65 16 2 C -0.11 -1.65 5.19 -26.73 -0.14 -1.79 16 3 C -0.10 -1.56 2.12 -90.72 -0.19 -1.75 16 4 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 5 C 0.12 1.81 5.01 -3.93 -0.02 1.79 16 6 N -0.59 -8.15 2.98 -173.03 -0.52 -8.67 16 7 C 0.52 7.04 7.69 -10.98 -0.08 6.95 16 8 O -0.54 -9.39 15.45 5.56 0.09 -9.31 16 9 C -0.08 -0.79 4.39 -29.03 -0.13 -0.92 16 10 C 0.10 1.21 5.68 -82.38 -0.47 0.74 16 11 N -0.26 -3.82 12.98 33.74 0.44 -3.38 16 12 O 0.02 0.37 13.71 12.02 0.16 0.53 16 13 N -0.28 -3.83 12.98 33.74 0.44 -3.39 16 14 C 0.09 1.00 7.19 -82.38 -0.59 0.41 16 15 C -0.09 -0.67 10.23 36.00 0.37 -0.31 16 16 C 0.11 1.41 6.09 -3.71 -0.02 1.38 16 17 C -0.15 -2.16 5.78 -26.61 -0.15 -2.32 16 18 C 0.18 3.01 2.53 -67.89 -0.17 2.84 16 19 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 20 N -0.72 -15.19 3.72 -53.39 -0.20 -15.39 16 21 C -0.24 -5.83 9.93 -15.06 -0.15 -5.98 16 22 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 24 N -0.93 -25.66 13.06 55.49 0.72 -24.94 16 25 Si 0.90 20.82 29.55 -169.99 -5.02 15.80 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.70 6.70 -51.93 -0.35 0.36 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.36 7.70 -51.93 -0.40 0.96 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.36 5.72 -51.93 -0.30 1.07 16 35 H 0.08 1.31 6.64 -51.93 -0.34 0.97 16 36 H 0.13 0.79 6.93 -51.93 -0.36 0.43 16 37 H 0.12 1.00 7.69 -51.93 -0.40 0.60 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.46 7.13 -51.93 -0.37 0.09 16 41 H 0.09 1.40 7.74 -51.93 -0.40 1.00 16 42 H 0.07 0.65 5.93 -51.93 -0.31 0.34 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.38 8.72 5.95 -40.82 -0.24 8.48 16 46 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -30.93 370.24 -6.62 -37.55 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.82 Total: 6.57 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.49 Total: -0.95 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.89 Total: -55.76 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.25 Total: -8.78 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.93 -6.62 -37.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037955410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.519 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds