Wall clock time and date at job start Tue Mar 31 2020 12:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47252 * 2 1 4 4 H 1.08998 * 109.50089 * 54.93246 * 3 2 1 5 5 C 1.52766 * 109.55910 * 294.96136 * 3 2 1 6 6 N 1.46922 * 109.00423 * 185.55293 * 5 3 2 7 7 C 1.34777 * 120.63244 * 233.58279 * 6 5 3 8 8 O 1.21278 * 119.99854 * 359.72887 * 7 6 5 9 9 C 1.50703 * 120.00161 * 179.72194 * 7 6 5 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 6 11 11 N 1.29956 * 125.29948 * 90.02524 * 10 9 7 12 12 O 1.41876 * 107.41055 * 179.97438 * 11 10 9 13 13 N 1.41881 * 106.38811 * 0.02562 * 12 11 10 14 14 C 1.29952 * 107.41376 * 359.71526 * 13 12 11 15 15 C 1.50697 * 125.30515 * 180.24636 * 14 13 12 16 16 C 1.46926 * 118.74006 * 53.31495 * 6 5 3 17 17 C 1.53197 * 108.77484 * 306.64082 * 16 6 5 18 18 C 1.53037 * 109.49688 * 175.00301 * 3 2 1 19 19 H 1.09004 * 109.44815 * 301.32701 * 18 3 2 20 20 N 1.46500 * 109.46359 * 61.28827 * 18 3 2 21 21 C 1.36941 * 119.99941 * 205.06683 * 20 18 3 22 22 H 1.07998 * 120.00247 * 0.02562 * 21 20 18 23 23 C 1.38815 * 119.99603 * 180.02562 * 21 20 18 24 24 N 1.31619 * 120.00024 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99832 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47099 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46986 * 120.00125 * 25 23 21 28 28 H 1.48498 * 109.47819 * 240.00323 * 25 23 21 29 29 H 1.08999 * 109.47097 * 300.00591 * 1 2 3 30 30 H 1.08998 * 109.47092 * 60.00207 * 1 2 3 31 31 H 1.08997 * 109.47461 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47097 * 239.99409 * 2 1 3 33 33 H 1.09002 * 109.46645 * 119.99597 * 2 1 3 34 34 H 1.09003 * 109.51011 * 65.67521 * 5 3 2 35 35 H 1.08996 * 109.43207 * 305.38992 * 5 3 2 36 36 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 37 37 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 38 38 H 1.08996 * 109.47223 * 270.22932 * 15 14 13 39 39 H 1.09000 * 109.46997 * 30.22768 * 15 14 13 40 40 H 1.09003 * 109.47152 * 150.22576 * 15 14 13 41 41 H 1.09001 * 109.59151 * 66.42410 * 16 6 5 42 42 H 1.09005 * 109.59202 * 186.71064 * 16 6 5 43 43 H 1.09000 * 109.49544 * 174.58699 * 17 16 6 44 44 H 1.08997 * 109.49415 * 294.65077 * 17 16 6 45 45 H 0.96993 * 120.00068 * 25.07314 * 20 18 3 46 46 H 0.97003 * 119.99993 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9823 0.8409 5 6 1.6378 2.1272 -1.3050 6 7 2.2452 3.4642 -1.3509 7 6 1.4858 4.5564 -1.5675 8 8 0.2898 4.4405 -1.7318 9 6 2.1228 5.9216 -1.6055 10 6 1.0639 6.9631 -1.8606 11 7 0.3836 7.5828 -0.9430 12 8 -0.5020 8.4749 -1.6008 13 7 -0.2720 8.3144 -2.9916 14 6 0.6612 7.4208 -3.1308 15 6 1.2223 6.9451 -4.4461 16 6 3.6953 3.5886 -1.1500 17 6 4.0737 2.8880 0.1587 18 6 3.5652 1.4450 0.1257 19 1 3.8544 0.9369 1.0457 20 7 4.1507 0.7473 -1.0218 21 6 5.3880 0.1704 -0.9139 22 1 5.9320 0.2294 0.0172 23 6 5.9429 -0.4902 -2.0014 24 7 5.2801 -0.5616 -3.1363 25 14 7.6309 -1.2766 -1.8545 26 1 8.1621 -1.0564 -0.4853 27 1 7.5220 -2.7346 -2.1142 28 1 8.5504 -0.6644 -2.8470 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 0.5524 2.2172 -1.3494 35 1 1.9923 1.5357 -2.1491 36 1 2.8648 5.9544 -2.4033 37 1 2.6074 6.1231 -0.6501 38 1 0.6420 6.0940 -4.8021 39 1 1.1694 7.7521 -5.1768 40 1 2.2615 6.6452 -4.3106 41 1 4.2211 3.1187 -1.9812 42 1 3.9675 4.6427 -1.0947 43 1 5.1579 2.8893 0.2718 44 1 3.6198 3.4151 0.9979 45 1 3.6620 0.6941 -1.8580 46 1 5.6680 -1.0229 -3.8963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037955410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:01 Heat of formation + Delta-G solvation = 39.181243 kcal Electronic energy + Delta-G solvation = -28250.423985 eV Core-core repulsion = 24371.614080 eV Total energy + Delta-G solvation = -3878.809905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.64665 -41.33354 -39.27548 -35.90834 -35.70110 -35.30999 -34.45829 -33.37094 -31.16576 -30.93327 -29.74134 -29.41188 -26.41190 -25.37764 -25.01332 -23.65508 -22.20064 -22.00163 -20.76214 -19.64348 -19.19901 -18.41291 -17.94411 -17.18209 -16.87687 -16.66316 -16.37039 -15.86843 -15.61740 -15.37156 -15.30856 -14.87121 -14.72025 -14.64136 -14.37714 -14.27936 -14.06538 -13.85765 -13.60312 -13.19302 -13.03492 -12.89697 -12.85935 -12.84963 -12.64001 -12.59432 -12.32894 -12.10505 -12.06842 -12.00654 -11.80295 -11.67940 -11.57641 -11.42668 -11.09164 -10.95246 -10.73358 -9.59941 -8.86257 -7.84196 -5.09342 -0.57351 0.86042 1.48090 1.50519 1.51917 1.55198 1.62001 1.95460 2.12289 2.63843 2.79287 3.37792 3.50528 3.56423 3.84981 3.85568 3.91193 4.06929 4.13291 4.13918 4.27993 4.37940 4.42134 4.44101 4.47443 4.51095 4.61531 4.64355 4.70724 4.75543 4.89430 4.92644 5.03475 5.07667 5.09281 5.20436 5.25762 5.27253 5.39008 5.42549 5.54847 5.66485 5.69063 5.81621 6.38101 6.41957 7.04937 7.46479 8.22506 8.46240 9.38908 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.003332 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.179833 B = 8401.387167 C = 9259.573740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.093 4.093 4 H 0.081 0.919 5 C 0.126 3.874 6 N -0.593 5.593 7 C 0.520 3.480 8 O -0.585 6.585 9 C -0.077 4.077 10 C 0.107 3.893 11 N -0.289 5.289 12 O -0.014 6.014 13 N -0.305 5.305 14 C 0.098 3.902 15 C -0.097 4.097 16 C 0.113 3.887 17 C -0.146 4.146 18 C 0.171 3.829 19 H 0.042 0.958 20 N -0.723 5.723 21 C -0.222 4.222 22 H 0.074 0.926 23 C -0.069 4.069 24 N -0.966 5.966 25 Si 0.957 3.043 26 H -0.269 1.269 27 H -0.305 1.305 28 H -0.297 1.297 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.174 0.826 37 H 0.152 0.848 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.064 0.936 42 H 0.119 0.881 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.375 0.625 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.712 12.777 2.034 13.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.113 4.113 4 H 0.099 0.901 5 C 0.003 3.997 6 N -0.324 5.324 7 C 0.308 3.692 8 O -0.466 6.466 9 C -0.117 4.117 10 C -0.078 4.078 11 N -0.035 5.035 12 O -0.148 6.148 13 N -0.055 5.055 14 C -0.084 4.084 15 C -0.154 4.154 16 C -0.009 4.009 17 C -0.186 4.186 18 C 0.062 3.938 19 H 0.060 0.940 20 N -0.364 5.364 21 C -0.354 4.354 22 H 0.092 0.908 23 C -0.261 4.261 24 N -0.617 5.617 25 Si 0.789 3.211 26 H -0.193 1.193 27 H -0.233 1.233 28 H -0.225 1.225 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.191 0.809 37 H 0.169 0.831 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.082 0.918 42 H 0.137 0.863 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.208 0.792 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.143 13.588 2.708 14.779 hybrid contribution 1.054 -1.389 -0.638 1.856 sum -4.089 12.199 2.071 13.032 Atomic orbital electron populations 1.21787 0.95052 1.01826 1.01739 1.21341 0.95798 0.95491 1.01764 1.21582 0.96100 0.96251 0.97398 0.90102 1.21412 0.98489 0.82112 0.97701 1.48081 1.09189 1.05908 1.69179 1.20470 0.86323 0.86269 0.76126 1.90730 1.16609 1.87084 1.52199 1.20649 0.94852 0.85757 1.10443 1.24285 0.96931 0.96703 0.89835 1.79858 1.01743 1.02712 1.19146 1.93347 1.54315 1.55318 1.11860 1.79880 1.14818 1.16895 0.93859 1.25207 0.92105 0.91648 0.99483 1.20898 1.03436 1.03447 0.87658 1.21876 0.77804 1.02629 0.98594 1.22410 1.01720 0.97341 0.97138 1.20440 0.90730 0.91964 0.90617 0.93956 1.42566 1.18225 1.64267 1.11370 1.19563 0.94265 1.25028 0.96570 0.90833 1.25286 1.01420 1.03219 0.96216 1.69787 1.39360 1.49829 1.02743 0.85301 0.81199 0.77272 0.77329 1.19338 1.23279 1.22495 0.92139 0.93171 0.92302 0.93500 0.92152 0.90052 0.92779 0.80903 0.83065 0.88164 0.87548 0.85595 0.91806 0.86307 0.91059 0.90654 0.79167 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.67 71.98 0.70 -3.01 16 2 C -0.11 -3.16 5.19 30.59 0.16 -3.00 16 3 C -0.09 -2.69 2.12 -10.86 -0.02 -2.72 16 4 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 5 C 0.13 3.73 5.01 86.22 0.43 4.16 16 6 N -0.59 -14.77 2.98 -819.72 -2.44 -17.21 16 7 C 0.52 12.60 7.69 87.66 0.67 13.27 16 8 O -0.59 -19.30 15.45 -3.02 -0.05 -19.35 16 9 C -0.08 -1.15 4.39 29.10 0.13 -1.02 16 10 C 0.11 2.31 5.68 43.49 0.25 2.56 16 11 N -0.29 -8.09 12.98 -47.16 -0.61 -8.70 16 12 O -0.01 -0.44 13.71 70.16 0.96 0.52 16 13 N -0.31 -8.16 12.98 -47.16 -0.61 -8.78 16 14 C 0.10 2.02 7.19 43.49 0.31 2.33 16 15 C -0.10 -1.07 10.23 71.23 0.73 -0.34 16 16 C 0.11 2.52 6.09 86.36 0.53 3.05 16 17 C -0.15 -3.72 5.78 30.67 0.18 -3.54 16 18 C 0.17 5.55 2.53 45.02 0.11 5.66 16 19 H 0.04 1.46 8.08 -2.38 -0.02 1.44 16 20 N -0.72 -30.44 3.72 -322.81 -1.20 -31.64 16 21 C -0.22 -10.78 9.93 84.03 0.83 -9.94 16 22 H 0.07 3.47 7.83 -2.91 -0.02 3.45 16 23 C -0.07 -3.59 5.50 84.86 0.47 -3.13 16 24 N -0.97 -54.19 13.06 21.65 0.28 -53.90 16 25 Si 0.96 42.93 29.55 68.60 2.03 44.96 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 27 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 28 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.29 6.70 -2.39 -0.02 1.28 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.69 7.70 -2.39 -0.02 1.67 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 2.52 5.72 -2.39 -0.01 2.51 16 35 H 0.05 1.87 6.64 -2.39 -0.02 1.85 16 36 H 0.17 1.05 6.93 -2.39 -0.02 1.03 16 37 H 0.15 1.57 7.69 -2.39 -0.02 1.55 16 38 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.13 0.59 7.13 -2.39 -0.02 0.58 16 41 H 0.06 1.84 7.74 -2.39 -0.02 1.82 16 42 H 0.12 1.52 5.93 -2.38 -0.01 1.51 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.37 17.32 5.95 -92.71 -0.55 16.77 16 46 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -70.29 370.24 4.28 -66.01 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.45 Total: 23.75 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 5.47 Total: 4.34 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -4.58 Total: -120.23 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.92 Total: -18.83 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -70.29 4.28 -66.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037955410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.189 kcal (2) G-P(sol) polarization free energy of solvation -70.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds