Wall clock time and date at job start Tue Mar 31 2020 12:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47109 * 2 1 4 4 H 1.08997 * 109.49582 * 304.93234 * 3 2 1 5 5 C 1.53191 * 109.49463 * 64.99901 * 3 2 1 6 6 N 1.46926 * 108.89109 * 174.54707 * 5 3 2 7 7 C 1.34780 * 120.62730 * 126.46248 * 6 5 3 8 8 O 1.21276 * 120.00248 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99585 * 180.02562 * 7 6 5 10 10 C 1.50705 * 109.46989 * 179.97438 * 9 7 6 11 11 N 1.29949 * 125.30401 * 269.69351 * 10 9 7 12 12 O 1.41879 * 107.41224 * 179.89021 * 11 10 9 13 13 N 1.41871 * 106.39010 * 0.37122 * 12 11 10 14 14 C 1.29959 * 107.41017 * 359.77813 * 13 12 11 15 15 C 1.50701 * 125.30169 * 180.02562 * 14 13 12 16 16 C 1.46957 * 118.71783 * 306.64359 * 6 5 3 17 17 C 1.53197 * 108.89063 * 53.35357 * 16 6 5 18 18 C 1.53040 * 109.31110 * 305.44560 * 17 16 6 19 19 H 1.09001 * 109.45142 * 181.37673 * 18 17 16 20 20 N 1.46498 * 109.46296 * 301.34364 * 18 17 16 21 21 C 1.36935 * 119.99779 * 275.06937 * 20 18 17 22 22 H 1.07997 * 120.00337 * 0.02562 * 21 20 18 23 23 C 1.38815 * 119.99823 * 179.97438 * 21 20 18 24 24 N 1.31626 * 119.99718 * 179.97438 * 23 21 20 25 25 Si 1.86790 * 120.00168 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47508 * 89.99618 * 25 23 21 27 27 H 1.48502 * 109.47159 * 209.99681 * 25 23 21 28 28 H 1.48504 * 109.47095 * 329.99601 * 25 23 21 29 29 H 1.09002 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47317 * 299.99902 * 1 2 3 31 31 H 1.09006 * 109.46982 * 59.99975 * 1 2 3 32 32 H 1.09003 * 109.47317 * 240.00097 * 2 1 3 33 33 H 1.08997 * 109.47168 * 120.00002 * 2 1 3 34 34 H 1.09002 * 109.58786 * 294.40751 * 5 3 2 35 35 H 1.08996 * 109.58870 * 54.69031 * 5 3 2 36 36 H 1.09002 * 109.47438 * 299.99718 * 9 7 6 37 37 H 1.08999 * 109.47522 * 60.00065 * 9 7 6 38 38 H 1.09002 * 109.47308 * 269.99865 * 15 14 13 39 39 H 1.08998 * 109.47452 * 29.99399 * 15 14 13 40 40 H 1.08996 * 109.47419 * 150.00095 * 15 14 13 41 41 H 1.09001 * 109.46843 * 293.57352 * 16 6 5 42 42 H 1.08997 * 109.71602 * 173.28846 * 16 6 5 43 43 H 1.08995 * 109.50005 * 185.49506 * 17 16 6 44 44 H 1.08994 * 109.52103 * 65.41136 * 17 16 6 45 45 H 0.96994 * 120.00240 * 95.06387 * 20 18 17 46 46 H 0.97002 * 119.99705 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6065 1.9816 -0.8424 5 6 1.6349 2.1280 1.3088 6 7 2.2409 3.4658 1.3525 7 6 1.4804 4.5573 1.5690 8 8 0.2842 4.4406 1.7305 9 6 2.1168 5.9227 1.6105 10 6 1.0568 6.9634 1.8647 11 7 0.3820 7.5879 0.9464 12 8 -0.5092 8.4749 1.6038 13 7 -0.2819 8.3128 2.9947 14 6 0.6474 7.4152 3.1349 15 6 1.2005 6.9324 4.4510 16 6 3.6913 3.5909 1.1515 17 6 4.0733 2.8890 -0.1555 18 6 3.5655 1.4457 -0.1220 19 1 3.8574 0.9369 -1.0407 20 7 4.1485 0.7497 1.0277 21 6 5.3868 0.1745 0.9239 22 1 5.9339 0.2343 -0.0053 23 6 5.9395 -0.4846 2.0135 24 7 7.1296 -1.0379 1.9136 25 14 4.9937 -0.5874 3.6209 26 1 4.1523 -1.8110 3.6229 27 1 5.9502 -0.6427 4.7555 28 1 4.1265 0.6098 3.7625 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5495 2.2168 1.3541 35 1 1.9889 1.5388 2.1546 36 1 2.8569 5.9546 2.4101 37 1 2.6035 6.1259 0.6566 38 1 2.0499 7.5525 4.7376 39 1 0.4274 6.9991 5.2164 40 1 1.5243 5.8965 4.3509 41 1 4.2152 3.1222 1.9845 42 1 3.9650 4.6444 1.0941 43 1 5.1576 2.8907 -0.2659 44 1 3.6211 3.4144 -0.9967 45 1 3.6574 0.6963 1.8624 46 1 7.5156 -1.4987 2.6748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037955412.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:06 Heat of formation + Delta-G solvation = 63.208227 kcal Electronic energy + Delta-G solvation = -28379.187657 eV Core-core repulsion = 24501.419640 eV Total energy + Delta-G solvation = -3877.768017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.78416 -40.32760 -38.18698 -34.86407 -34.72616 -33.97281 -33.60792 -31.88569 -30.26241 -29.95223 -29.04670 -28.49324 -25.31354 -24.07705 -23.27765 -22.77044 -21.25554 -20.96396 -19.77390 -18.45401 -18.03123 -17.42864 -17.05607 -16.23391 -15.95821 -15.63533 -14.96724 -14.61645 -14.57701 -14.43822 -14.09660 -13.77929 -13.73295 -13.69208 -13.46370 -13.30277 -13.14687 -12.67681 -12.55675 -12.54693 -12.06013 -11.97167 -11.89708 -11.69698 -11.38032 -11.19752 -11.14409 -11.05787 -10.91941 -10.86492 -10.51284 -10.45800 -10.30760 -9.92708 -9.89834 -9.64605 -9.05333 -8.56361 -7.38272 -5.87441 -3.23402 0.30918 1.66472 2.39285 2.40646 2.81000 3.01839 3.24192 3.28960 3.36394 3.57694 4.19750 4.34183 4.47604 4.52837 4.78508 4.85051 4.89059 4.98235 5.00316 5.05393 5.09315 5.20806 5.28603 5.32799 5.44308 5.46863 5.51070 5.53090 5.55399 5.67333 5.76865 5.91674 5.94358 6.09056 6.15927 6.22529 6.32881 6.38448 6.44435 6.56449 6.66601 6.68855 6.75764 7.33428 7.88543 7.98105 8.31492 9.09313 9.81712 10.01174 11.30867 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015483 B = 0.003625 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.956337 B = 7721.431243 C = 8392.695912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.107 4.107 4 H 0.073 0.927 5 C 0.117 3.883 6 N -0.598 5.598 7 C 0.519 3.481 8 O -0.542 6.542 9 C -0.082 4.082 10 C 0.099 3.901 11 N -0.262 5.262 12 O 0.025 5.975 13 N -0.280 5.280 14 C 0.088 3.912 15 C -0.094 4.094 16 C 0.107 3.893 17 C -0.151 4.151 18 C 0.184 3.816 19 H 0.062 0.938 20 N -0.743 5.743 21 C -0.243 4.243 22 H 0.091 0.909 23 C 0.008 3.992 24 N -0.932 5.932 25 Si 0.878 3.122 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.279 1.279 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.054 0.946 45 H 0.360 0.640 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.101 12.850 1.044 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.127 4.127 4 H 0.091 0.909 5 C -0.005 4.005 6 N -0.330 5.330 7 C 0.305 3.695 8 O -0.420 6.420 9 C -0.123 4.123 10 C -0.084 4.084 11 N -0.005 5.005 12 O -0.116 6.116 13 N -0.026 5.026 14 C -0.094 4.094 15 C -0.152 4.152 16 C -0.015 4.015 17 C -0.192 4.192 18 C 0.074 3.926 19 H 0.080 0.920 20 N -0.387 5.387 21 C -0.372 4.372 22 H 0.109 0.891 23 C -0.188 4.188 24 N -0.579 5.579 25 Si 0.709 3.291 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.072 0.928 45 H 0.194 0.806 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.447 13.595 0.417 17.150 hybrid contribution 0.078 -0.631 1.474 1.606 sum -10.369 12.964 1.891 16.708 Atomic orbital electron populations 1.21864 0.96577 1.01263 1.01496 1.21430 0.94514 0.95572 1.03384 1.21815 0.97485 0.96317 0.97103 0.90893 1.21732 0.99172 0.81306 0.98263 1.48120 1.08901 1.06405 1.69556 1.19948 0.86895 0.85277 0.77410 1.90739 1.14582 1.86362 1.50339 1.20423 0.95206 0.89288 1.07350 1.23806 0.97481 0.97237 0.89914 1.79911 1.00755 1.01827 1.18027 1.93380 1.52800 1.54581 1.10829 1.79902 1.13266 1.14762 0.94659 1.24515 0.93594 0.93235 0.98074 1.20597 1.02209 1.02742 0.89662 1.21868 0.78625 1.00517 1.00493 1.22510 1.02532 0.98863 0.95280 1.20191 0.89344 0.90700 0.92339 0.92038 1.42837 1.19679 1.65918 1.10276 1.19047 0.92044 1.26926 0.99227 0.89140 1.24642 0.96427 1.00222 0.97528 1.69691 1.16293 1.41091 1.30866 0.86670 0.79403 0.77821 0.85203 1.21039 1.21758 1.20548 0.92967 0.92889 0.93086 0.91393 0.91126 0.89155 0.91306 0.85294 0.85578 0.88342 0.89002 0.88793 0.89670 0.90731 0.89930 0.92756 0.80615 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.67 37.15 0.36 -1.49 16 2 C -0.11 -1.54 5.19 -26.73 -0.14 -1.68 16 3 C -0.11 -1.49 2.14 -90.49 -0.19 -1.69 16 4 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 5 C 0.12 1.65 5.02 -3.71 -0.02 1.64 16 6 N -0.60 -7.66 2.98 -172.74 -0.51 -8.17 16 7 C 0.52 6.59 7.69 -10.98 -0.08 6.51 16 8 O -0.54 -8.87 15.45 5.56 0.09 -8.78 16 9 C -0.08 -0.73 4.21 -29.03 -0.12 -0.85 16 10 C 0.10 1.14 5.68 -82.38 -0.47 0.67 16 11 N -0.26 -3.66 12.98 33.74 0.44 -3.23 16 12 O 0.03 0.37 13.71 12.02 0.16 0.54 16 13 N -0.28 -3.68 12.98 33.74 0.44 -3.24 16 14 C 0.09 0.95 7.19 -82.38 -0.59 0.36 16 15 C -0.09 -0.62 10.05 36.01 0.36 -0.26 16 16 C 0.11 1.29 6.07 -3.69 -0.02 1.27 16 17 C -0.15 -2.05 5.78 -26.61 -0.15 -2.21 16 18 C 0.18 2.96 2.53 -67.89 -0.17 2.78 16 19 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 20 N -0.74 -14.83 3.52 -53.38 -0.19 -15.02 16 21 C -0.24 -6.05 10.41 -15.06 -0.16 -6.21 16 22 H 0.09 2.46 8.06 -52.49 -0.42 2.03 16 23 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 24 N -0.93 -27.41 13.97 55.49 0.78 -26.64 16 25 Si 0.88 20.37 27.74 -169.99 -4.71 15.65 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -5.96 6.52 56.52 0.37 -5.59 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.63 6.70 -51.93 -0.35 0.29 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.11 7.70 -51.93 -0.40 0.71 16 34 H 0.09 1.31 5.72 -51.93 -0.30 1.01 16 35 H 0.07 1.05 6.65 -51.93 -0.35 0.71 16 36 H 0.13 0.70 7.59 -51.93 -0.39 0.31 16 37 H 0.13 0.93 7.69 -51.93 -0.40 0.53 16 38 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.57 7.78 -51.93 -0.40 0.17 16 41 H 0.09 1.21 7.74 -51.93 -0.40 0.81 16 42 H 0.07 0.63 5.95 -51.93 -0.31 0.32 16 43 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.36 7.22 3.81 -40.82 -0.16 7.06 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -32.36 368.09 -6.31 -38.67 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.85 Total: 5.73 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.50 Total: -1.05 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.95 Total: -56.30 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.25 Total: -8.25 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.71 Total: 15.65 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.36 -6.31 -38.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037955412.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.878 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds