Wall clock time and date at job start Tue Mar 31 2020 12:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47449 * 2 1 4 4 H 1.09001 * 109.49596 * 54.92976 * 3 2 1 5 5 C 1.53194 * 109.51974 * 294.85054 * 3 2 1 6 6 N 1.46924 * 108.77334 * 185.39638 * 5 3 2 7 7 C 1.34787 * 120.63033 * 233.88527 * 6 5 3 8 8 O 1.21282 * 119.99956 * 359.72115 * 7 6 5 9 9 C 1.50697 * 119.99793 * 179.72182 * 7 6 5 10 10 C 1.50697 * 109.46861 * 180.02562 * 9 7 6 11 11 N 1.29957 * 125.30118 * 269.69347 * 10 9 7 12 12 O 1.41880 * 107.41198 * 179.89248 * 11 10 9 13 13 N 1.41876 * 106.38961 * 0.36509 * 12 11 10 14 14 C 1.29951 * 107.41365 * 359.78609 * 13 12 11 15 15 C 1.50697 * 125.30562 * 179.97438 * 14 13 12 16 16 C 1.46926 * 118.73991 * 53.61035 * 6 5 3 17 17 C 1.53185 * 108.77524 * 306.39104 * 16 6 5 18 18 C 1.53038 * 109.49766 * 175.00086 * 3 2 1 19 19 H 1.08994 * 109.46487 * 61.32751 * 18 3 2 20 20 N 1.46502 * 109.44869 * 301.35859 * 18 3 2 21 21 C 1.36934 * 120.00137 * 154.94188 * 20 18 3 22 22 H 1.07996 * 119.99786 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99956 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00167 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99656 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47066 * 90.00123 * 25 23 21 27 27 H 1.48504 * 109.46712 * 210.00156 * 25 23 21 28 28 H 1.48497 * 109.47477 * 329.99975 * 25 23 21 29 29 H 1.08998 * 109.47050 * 300.00581 * 1 2 3 30 30 H 1.09005 * 109.47169 * 60.00370 * 1 2 3 31 31 H 1.09003 * 109.47606 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47050 * 239.99419 * 2 1 3 33 33 H 1.09005 * 109.47169 * 119.99629 * 2 1 3 34 34 H 1.09004 * 109.58535 * 65.60978 * 5 3 2 35 35 H 1.08994 * 109.59149 * 305.18455 * 5 3 2 36 36 H 1.08997 * 109.47228 * 299.99525 * 9 7 6 37 37 H 1.08997 * 109.47248 * 60.00068 * 9 7 6 38 38 H 1.08997 * 109.47241 * 269.99665 * 15 14 13 39 39 H 1.09005 * 109.46746 * 29.99639 * 15 14 13 40 40 H 1.08998 * 109.47102 * 149.99474 * 15 14 13 41 41 H 1.09001 * 109.58178 * 66.18066 * 16 6 5 42 42 H 1.09004 * 109.58598 * 186.60071 * 16 6 5 43 43 H 1.08998 * 109.50031 * 174.58725 * 17 16 6 44 44 H 1.09001 * 109.49616 * 294.65180 * 17 16 6 45 45 H 0.97000 * 119.99471 * 334.94056 * 20 18 3 46 46 H 0.97001 * 119.99884 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 0.8410 5 6 1.6386 2.1274 -1.3102 6 7 2.2451 3.4650 -1.3497 7 6 1.4849 4.5578 -1.5607 8 8 0.2889 4.4419 -1.7252 9 6 2.1210 5.9235 -1.5922 10 6 1.0613 6.9656 -1.8417 11 7 0.6898 7.3937 -3.0111 12 8 -0.3257 8.3630 -2.8054 13 7 -0.5039 8.4643 -1.4015 14 6 0.3233 7.6318 -0.8434 15 6 0.4707 7.4135 0.6404 16 6 3.6953 3.5893 -1.1487 17 6 4.0736 2.8881 0.1596 18 6 3.5652 1.4449 0.1257 19 1 4.0009 0.9264 -0.7283 20 7 3.9539 0.7614 1.3618 21 6 5.1915 0.1844 1.4652 22 1 5.8808 0.2329 0.6353 23 6 5.5599 -0.4627 2.6366 24 7 4.7195 -0.5223 3.6479 25 14 7.2479 -1.2504 2.7772 26 1 8.2137 -0.2586 3.3147 27 1 7.1749 -2.4170 3.6932 28 1 7.6969 -1.7018 1.4357 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.5533 2.2167 -1.3582 35 1 1.9965 1.5388 -2.1549 36 1 2.6058 6.1207 -0.6360 37 1 2.8626 5.9606 -2.3901 38 1 1.2221 8.0971 1.0354 39 1 -0.4844 7.5999 1.1316 40 1 0.7807 6.3854 0.8273 41 1 4.2209 3.1200 -1.9803 42 1 3.9670 4.6433 -1.0903 43 1 5.1577 2.8893 0.2727 44 1 3.6196 3.4146 0.9991 45 1 3.3346 0.7176 2.1071 46 1 4.9772 -0.9742 4.4666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037955415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:12 Heat of formation + Delta-G solvation = 57.057587 kcal Electronic energy + Delta-G solvation = -27910.953350 eV Core-core repulsion = 24032.918621 eV Total energy + Delta-G solvation = -3878.034729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.78909 -40.28119 -38.00854 -34.93465 -34.81942 -33.91735 -33.58667 -31.84069 -30.28222 -29.62069 -29.02718 -28.32650 -25.17255 -23.99505 -23.13390 -22.59502 -21.21924 -20.91894 -19.93157 -19.09003 -17.58294 -17.16949 -17.12073 -16.24217 -15.90842 -15.64886 -15.02855 -14.59899 -14.55987 -14.23028 -13.96691 -13.77839 -13.71033 -13.47875 -13.39529 -13.23431 -13.17691 -12.87008 -12.53986 -12.21177 -12.02109 -11.94122 -11.84977 -11.73382 -11.38763 -11.15223 -11.01589 -10.93522 -10.85801 -10.80104 -10.45681 -10.29378 -10.22444 -9.98417 -9.79705 -9.69306 -8.98650 -8.66368 -7.05378 -5.85547 -3.14667 0.30393 1.65983 2.36678 2.38865 2.80056 2.97446 3.36380 3.42310 3.43996 3.57397 4.16681 4.31973 4.49592 4.52004 4.76808 4.84466 4.90508 5.01574 5.06088 5.11170 5.14200 5.21725 5.33057 5.34888 5.45331 5.52102 5.55508 5.58717 5.59105 5.79802 5.90019 6.02336 6.05853 6.19339 6.25194 6.29159 6.37127 6.42821 6.56553 6.68408 6.72285 6.86640 6.94447 7.26690 7.61029 7.94277 8.32486 9.44296 10.00779 10.35397 11.36681 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018862 B = 0.002922 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.143590 B = 9579.688887 C =10140.855656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.070 0.930 5 C 0.119 3.881 6 N -0.600 5.600 7 C 0.520 3.480 8 O -0.539 6.539 9 C -0.082 4.082 10 C 0.099 3.901 11 N -0.264 5.264 12 O 0.025 5.975 13 N -0.280 5.280 14 C 0.089 3.911 15 C -0.095 4.095 16 C 0.102 3.898 17 C -0.153 4.153 18 C 0.183 3.817 19 H 0.048 0.952 20 N -0.720 5.720 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.904 3.096 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.711 12.326 -8.069 15.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.089 0.911 5 C -0.003 4.003 6 N -0.332 5.332 7 C 0.306 3.694 8 O -0.417 6.417 9 C -0.123 4.123 10 C -0.085 4.085 11 N -0.007 5.007 12 O -0.116 6.116 13 N -0.025 5.025 14 C -0.094 4.094 15 C -0.153 4.153 16 C -0.021 4.021 17 C -0.194 4.194 18 C 0.072 3.928 19 H 0.066 0.934 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.207 4.207 24 N -0.579 5.579 25 Si 0.735 3.265 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.218 0.782 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.878 12.911 -9.212 16.915 hybrid contribution 1.275 -0.834 0.924 1.782 sum -4.603 12.077 -8.288 15.354 Atomic orbital electron populations 1.21846 0.96784 1.01125 1.01277 1.21454 0.94385 0.95625 1.03558 1.21788 0.97692 0.96355 0.96552 0.91127 1.21814 0.99505 0.80956 0.98071 1.48128 1.08646 1.06597 1.69866 1.19956 0.86930 0.85308 0.77253 1.90751 1.14659 1.86392 1.49885 1.20424 0.95468 0.89376 1.07025 1.23804 0.97745 0.97410 0.89505 1.79898 1.00470 1.01075 1.19229 1.93380 1.48996 1.52159 1.17062 1.79911 1.16543 1.16829 0.89265 1.24531 0.92231 0.92375 1.00219 1.20608 1.05144 1.04616 0.84898 1.21986 0.79087 1.01242 0.99783 1.22709 1.02449 0.99390 0.94833 1.20188 0.90735 0.90527 0.91334 0.93359 1.42403 1.16508 1.64418 1.12669 1.19194 0.91789 1.27547 0.98600 0.91231 1.24724 0.98104 1.01427 0.96451 1.69651 1.35165 1.48321 1.04743 0.86242 0.84096 0.78798 0.77329 1.21766 1.21820 1.20787 0.92981 0.93254 0.93123 0.92423 0.89704 0.89030 0.91392 0.85173 0.85689 0.88327 0.88953 0.88697 0.90959 0.90416 0.90327 0.92019 0.78176 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.67 37.16 0.36 -1.62 16 2 C -0.11 -1.67 5.31 -26.73 -0.14 -1.81 16 3 C -0.10 -1.51 1.92 -90.50 -0.17 -1.68 16 4 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 5 C 0.12 1.52 5.33 -3.71 -0.02 1.50 16 6 N -0.60 -6.90 2.97 -172.77 -0.51 -7.41 16 7 C 0.52 6.20 7.69 -10.98 -0.08 6.11 16 8 O -0.54 -8.55 15.45 5.56 0.09 -8.47 16 9 C -0.08 -0.68 4.21 -29.04 -0.12 -0.80 16 10 C 0.10 1.10 5.68 -82.38 -0.47 0.63 16 11 N -0.26 -3.58 12.98 33.74 0.44 -3.14 16 12 O 0.03 0.36 13.71 12.02 0.16 0.53 16 13 N -0.28 -3.64 12.98 33.74 0.44 -3.20 16 14 C 0.09 0.94 7.19 -82.38 -0.59 0.35 16 15 C -0.09 -0.63 10.05 36.00 0.36 -0.27 16 16 C 0.10 1.01 6.34 -3.71 -0.02 0.99 16 17 C -0.15 -2.10 5.66 -26.61 -0.15 -2.25 16 18 C 0.18 3.04 2.19 -67.89 -0.15 2.89 16 19 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 20 N -0.72 -15.85 4.33 -53.39 -0.23 -16.09 16 21 C -0.24 -6.03 9.93 -15.06 -0.15 -6.18 16 22 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -26.42 13.06 55.49 0.72 -25.69 16 25 Si 0.90 21.11 29.55 -169.99 -5.02 16.08 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.59 6.70 -51.93 -0.35 0.25 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.54 7.21 -51.93 -0.37 1.16 16 34 H 0.09 1.26 5.73 -51.93 -0.30 0.96 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.13 0.65 7.33 -51.93 -0.38 0.27 16 37 H 0.13 0.79 7.94 -51.93 -0.41 0.37 16 38 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.59 7.77 -51.93 -0.40 0.19 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.52 5.93 -51.93 -0.31 0.22 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.38 9.24 7.51 -40.82 -0.31 8.93 16 46 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -32.10 374.80 -6.74 -38.84 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.02 Total: 5.43 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -1.45 Total: -2.53 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.86 Total: -55.53 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.25 Total: -7.94 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.10 -6.74 -38.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037955415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.902 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds