Wall clock time and date at job start Tue Mar 31 2020 12:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47449 * 2 1 4 4 H 1.09001 * 109.49596 * 54.92976 * 3 2 1 5 5 C 1.53194 * 109.51974 * 294.85054 * 3 2 1 6 6 N 1.46924 * 108.77334 * 185.39638 * 5 3 2 7 7 C 1.34787 * 120.63033 * 233.88527 * 6 5 3 8 8 O 1.21282 * 119.99956 * 359.72115 * 7 6 5 9 9 C 1.50697 * 119.99793 * 179.72182 * 7 6 5 10 10 C 1.50697 * 109.46861 * 180.02562 * 9 7 6 11 11 N 1.29957 * 125.30118 * 269.69347 * 10 9 7 12 12 O 1.41880 * 107.41198 * 179.89248 * 11 10 9 13 13 N 1.41876 * 106.38961 * 0.36509 * 12 11 10 14 14 C 1.29951 * 107.41365 * 359.78609 * 13 12 11 15 15 C 1.50697 * 125.30562 * 179.97438 * 14 13 12 16 16 C 1.46926 * 118.73991 * 53.61035 * 6 5 3 17 17 C 1.53185 * 108.77524 * 306.39104 * 16 6 5 18 18 C 1.53038 * 109.49766 * 175.00086 * 3 2 1 19 19 H 1.08994 * 109.46487 * 61.32751 * 18 3 2 20 20 N 1.46502 * 109.44869 * 301.35859 * 18 3 2 21 21 C 1.36934 * 120.00137 * 154.94188 * 20 18 3 22 22 H 1.07996 * 119.99786 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99956 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00167 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99656 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47066 * 90.00123 * 25 23 21 27 27 H 1.48504 * 109.46712 * 210.00156 * 25 23 21 28 28 H 1.48497 * 109.47477 * 329.99975 * 25 23 21 29 29 H 1.08998 * 109.47050 * 300.00581 * 1 2 3 30 30 H 1.09005 * 109.47169 * 60.00370 * 1 2 3 31 31 H 1.09003 * 109.47606 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47050 * 239.99419 * 2 1 3 33 33 H 1.09005 * 109.47169 * 119.99629 * 2 1 3 34 34 H 1.09004 * 109.58535 * 65.60978 * 5 3 2 35 35 H 1.08994 * 109.59149 * 305.18455 * 5 3 2 36 36 H 1.08997 * 109.47228 * 299.99525 * 9 7 6 37 37 H 1.08997 * 109.47248 * 60.00068 * 9 7 6 38 38 H 1.08997 * 109.47241 * 269.99665 * 15 14 13 39 39 H 1.09005 * 109.46746 * 29.99639 * 15 14 13 40 40 H 1.08998 * 109.47102 * 149.99474 * 15 14 13 41 41 H 1.09001 * 109.58178 * 66.18066 * 16 6 5 42 42 H 1.09004 * 109.58598 * 186.60071 * 16 6 5 43 43 H 1.08998 * 109.50031 * 174.58725 * 17 16 6 44 44 H 1.09001 * 109.49616 * 294.65180 * 17 16 6 45 45 H 0.97000 * 119.99471 * 334.94056 * 20 18 3 46 46 H 0.97001 * 119.99884 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 0.8410 5 6 1.6386 2.1274 -1.3102 6 7 2.2451 3.4650 -1.3497 7 6 1.4849 4.5578 -1.5607 8 8 0.2889 4.4419 -1.7252 9 6 2.1210 5.9235 -1.5922 10 6 1.0613 6.9656 -1.8417 11 7 0.6898 7.3937 -3.0111 12 8 -0.3257 8.3630 -2.8054 13 7 -0.5039 8.4643 -1.4015 14 6 0.3233 7.6318 -0.8434 15 6 0.4707 7.4135 0.6404 16 6 3.6953 3.5893 -1.1487 17 6 4.0736 2.8881 0.1596 18 6 3.5652 1.4449 0.1257 19 1 4.0009 0.9264 -0.7283 20 7 3.9539 0.7614 1.3618 21 6 5.1915 0.1844 1.4652 22 1 5.8808 0.2329 0.6353 23 6 5.5599 -0.4627 2.6366 24 7 4.7195 -0.5223 3.6479 25 14 7.2479 -1.2504 2.7772 26 1 8.2137 -0.2586 3.3147 27 1 7.1749 -2.4170 3.6932 28 1 7.6969 -1.7018 1.4357 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.5533 2.2167 -1.3582 35 1 1.9965 1.5388 -2.1549 36 1 2.6058 6.1207 -0.6360 37 1 2.8626 5.9606 -2.3901 38 1 1.2221 8.0971 1.0354 39 1 -0.4844 7.5999 1.1316 40 1 0.7807 6.3854 0.8273 41 1 4.2209 3.1200 -1.9803 42 1 3.9670 4.6433 -1.0903 43 1 5.1577 2.8893 0.2727 44 1 3.6196 3.4146 0.9991 45 1 3.3346 0.7176 2.1071 46 1 4.9772 -0.9742 4.4666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037955415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:11 Heat of formation + Delta-G solvation = 35.675657 kcal Electronic energy + Delta-G solvation = -27911.880540 eV Core-core repulsion = 24032.918621 eV Total energy + Delta-G solvation = -3878.961919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.64705 -41.27869 -39.17899 -36.19293 -35.71057 -35.27088 -34.46050 -33.40713 -31.23569 -30.98977 -29.75185 -29.40197 -26.59197 -25.17328 -24.46390 -23.56130 -22.21136 -21.99937 -21.10059 -20.09966 -19.00664 -18.43649 -17.99062 -17.17861 -16.87108 -16.65112 -16.56244 -15.64760 -15.54163 -15.37859 -15.28987 -15.01778 -14.67781 -14.44587 -14.41678 -14.25462 -14.12691 -13.76666 -13.58603 -13.22334 -13.08793 -12.98990 -12.87546 -12.80027 -12.63155 -12.61241 -12.49231 -12.14163 -12.09877 -11.97263 -11.80410 -11.66965 -11.54211 -11.48952 -11.03706 -10.98809 -10.73055 -9.67607 -8.89568 -7.86625 -5.12894 -0.57077 0.85905 1.47478 1.49017 1.51856 1.52869 1.60187 1.94628 2.10253 2.61828 2.79175 3.36634 3.47759 3.56255 3.82295 3.86197 3.90242 4.05512 4.13341 4.13936 4.28939 4.34465 4.41001 4.44011 4.49566 4.53677 4.61712 4.67784 4.69999 4.81926 4.86110 4.90431 4.94803 5.05513 5.08085 5.11252 5.21725 5.31765 5.42458 5.51964 5.57782 5.63865 5.72644 5.81377 6.34664 6.36948 7.03555 7.42463 8.20130 8.41778 9.36798 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018862 B = 0.002922 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.143590 B = 9579.688887 C =10140.855656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.091 4.091 4 H 0.058 0.942 5 C 0.126 3.874 6 N -0.598 5.598 7 C 0.521 3.479 8 O -0.584 6.584 9 C -0.078 4.078 10 C 0.107 3.893 11 N -0.290 5.290 12 O -0.015 6.015 13 N -0.307 5.307 14 C 0.098 3.902 15 C -0.096 4.096 16 C 0.108 3.892 17 C -0.144 4.144 18 C 0.176 3.824 19 H 0.044 0.956 20 N -0.731 5.731 21 C -0.225 4.225 22 H 0.078 0.922 23 C -0.075 4.075 24 N -0.970 5.970 25 Si 0.962 3.038 26 H -0.289 1.289 27 H -0.304 1.304 28 H -0.271 1.271 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.175 0.825 37 H 0.155 0.845 38 H 0.131 0.869 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.123 0.877 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.371 0.629 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.204 13.483 -8.950 16.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.111 4.111 4 H 0.077 0.923 5 C 0.003 3.997 6 N -0.330 5.330 7 C 0.308 3.692 8 O -0.464 6.464 9 C -0.118 4.118 10 C -0.078 4.078 11 N -0.035 5.035 12 O -0.149 6.149 13 N -0.056 5.056 14 C -0.085 4.085 15 C -0.153 4.153 16 C -0.014 4.014 17 C -0.185 4.185 18 C 0.067 3.933 19 H 0.062 0.938 20 N -0.370 5.370 21 C -0.357 4.357 22 H 0.096 0.904 23 C -0.268 4.268 24 N -0.621 5.621 25 Si 0.793 3.207 26 H -0.216 1.216 27 H -0.232 1.232 28 H -0.196 1.196 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.192 0.808 37 H 0.173 0.827 38 H 0.149 0.851 39 H 0.112 0.888 40 H 0.123 0.877 41 H 0.105 0.895 42 H 0.141 0.859 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.202 0.798 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.365 14.120 -10.186 17.949 hybrid contribution 0.788 -1.238 1.189 1.889 sum -3.576 12.882 -8.996 16.114 Atomic orbital electron populations 1.21776 0.95149 1.01735 1.01662 1.21365 0.95825 0.95713 1.01808 1.21616 0.96028 0.96089 0.97347 0.92323 1.21624 0.99231 0.81933 0.96958 1.48151 1.09322 1.05972 1.69513 1.20482 0.86332 0.86360 0.75979 1.90751 1.16760 1.87087 1.51805 1.20683 0.94792 0.85858 1.10513 1.24327 0.97479 0.97067 0.88878 1.79849 1.01099 1.01815 1.20758 1.93351 1.50038 1.53271 1.18259 1.79890 1.18273 1.18719 0.88687 1.25216 0.90653 0.90718 1.01905 1.20872 1.06372 1.06000 0.82087 1.22097 0.77898 1.03710 0.97710 1.22481 1.01625 0.97151 0.97196 1.20464 0.92146 0.91949 0.88723 0.93817 1.42585 1.15363 1.65042 1.13997 1.19566 0.92596 1.25430 0.98095 0.90447 1.25409 1.01202 1.03375 0.96771 1.69803 1.36870 1.50306 1.05144 0.85300 0.80699 0.77438 0.77293 1.21632 1.23158 1.19554 0.93405 0.91970 0.92468 0.92039 0.93457 0.89825 0.90361 0.80811 0.82728 0.85081 0.88792 0.87674 0.89546 0.85862 0.91197 0.92448 0.79753 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.67 71.98 0.70 -3.00 16 2 C -0.11 -3.24 5.31 30.59 0.16 -3.08 16 3 C -0.09 -2.55 1.92 -10.72 -0.02 -2.57 16 4 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 5 C 0.13 2.94 5.33 86.36 0.46 3.40 16 6 N -0.60 -11.59 2.97 -818.90 -2.43 -14.02 16 7 C 0.52 10.60 7.69 87.65 0.67 11.27 16 8 O -0.58 -17.40 15.45 -3.04 -0.05 -17.45 16 9 C -0.08 -0.92 4.21 29.10 0.12 -0.80 16 10 C 0.11 2.09 5.68 43.49 0.25 2.34 16 11 N -0.29 -7.58 12.98 -47.15 -0.61 -8.19 16 12 O -0.02 -0.45 13.71 70.16 0.96 0.51 16 13 N -0.31 -7.85 12.98 -47.16 -0.61 -8.46 16 14 C 0.10 1.87 7.19 43.49 0.31 2.18 16 15 C -0.10 -0.95 10.05 71.23 0.72 -0.24 16 16 C 0.11 1.62 6.34 86.36 0.55 2.17 16 17 C -0.14 -3.53 5.66 30.67 0.17 -3.36 16 18 C 0.18 5.61 2.19 45.02 0.10 5.71 16 19 H 0.04 1.45 8.08 -2.39 -0.02 1.43 16 20 N -0.73 -32.23 4.33 -322.82 -1.40 -33.62 16 21 C -0.22 -11.21 9.93 84.03 0.83 -10.38 16 22 H 0.08 3.67 7.83 -2.91 -0.02 3.65 16 23 C -0.08 -4.05 5.50 84.86 0.47 -3.58 16 24 N -0.97 -56.35 13.06 21.65 0.28 -56.07 16 25 Si 0.96 43.57 29.55 68.60 2.03 45.59 16 26 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 27 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.42 6.70 -2.38 -0.02 1.40 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.77 7.21 -2.38 -0.02 1.75 16 34 H 0.08 2.16 5.73 -2.38 -0.01 2.15 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.17 0.56 7.33 -2.39 -0.02 0.54 16 37 H 0.16 1.02 7.94 -2.39 -0.02 1.00 16 38 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.10 0.88 7.77 -2.39 -0.02 0.86 16 41 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.12 0.82 5.93 -2.38 -0.01 0.80 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.37 18.26 7.51 -92.71 -0.70 17.56 16 46 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -74.01 374.80 3.96 -70.05 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.30 Total: 21.59 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 5.49 Total: 0.07 kcal Atomic # 7 Polarization: -115.60 SS G_CDS: -4.77 Total: -120.37 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: 0.92 Total: -16.94 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -74.01 3.96 -70.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037955415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.721 kcal (2) G-P(sol) polarization free energy of solvation -74.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds