Wall clock time and date at job start Tue Mar 31 2020 13:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47444 * 2 1 4 4 N 1.46499 * 109.47302 * 120.00314 * 2 1 3 5 5 N 1.28446 * 125.18748 * 292.88903 * 4 2 1 6 6 C 1.30867 * 110.92386 * 180.02562 * 5 4 2 7 7 C 1.39679 * 107.86237 * 359.77499 * 6 5 4 8 8 C 1.36603 * 125.19246 * 112.91337 * 4 2 1 9 9 C 1.47162 * 126.88192 * 359.94656 * 8 4 2 10 10 O 1.21633 * 120.00135 * 7.18524 * 9 8 4 11 11 N 1.34774 * 119.99849 * 187.19098 * 9 8 4 12 12 C 1.46504 * 120.00259 * 5.50327 * 11 9 8 13 13 C 1.46501 * 120.00103 * 185.50334 * 11 9 8 14 14 H 1.09008 * 110.63989 * 358.31473 * 13 11 9 15 15 C 1.54328 * 110.72012 * 121.44939 * 13 11 9 16 16 N 1.47016 * 107.26976 * 140.55754 * 15 13 11 17 17 C 1.36939 * 125.64905 * 181.08463 * 16 15 13 18 18 H 1.08000 * 119.99824 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00022 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00082 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00045 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47092 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46927 * 120.00102 * 21 19 17 24 24 H 1.48495 * 109.47669 * 240.00119 * 21 19 17 25 25 C 1.47423 * 108.70472 * 1.06116 * 16 15 13 26 26 C 1.54906 * 104.83441 * 335.87213 * 25 16 15 27 27 H 1.09002 * 111.00222 * 278.93573 * 26 25 16 28 28 O 1.42900 * 111.01048 * 155.08066 * 26 25 16 29 29 H 1.09001 * 109.47101 * 299.99670 * 1 2 3 30 30 H 1.09000 * 109.47227 * 59.99606 * 1 2 3 31 31 H 1.09001 * 109.47329 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47101 * 240.00329 * 2 1 3 33 33 H 1.09001 * 109.47279 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47230 * 300.00391 * 3 2 1 35 35 H 1.09003 * 109.47059 * 60.00466 * 3 2 1 36 36 H 1.08000 * 126.06597 * 179.97438 * 6 5 4 37 37 H 1.07998 * 127.31812 * 180.23012 * 7 6 5 38 38 H 1.09000 * 109.46876 * 275.81488 * 12 11 9 39 39 H 1.09003 * 109.46805 * 35.80781 * 12 11 9 40 40 H 1.08993 * 109.47345 * 155.80932 * 12 11 9 41 41 H 1.09003 * 109.88084 * 21.14524 * 15 13 11 42 42 H 1.08993 * 110.01416 * 260.04963 * 15 13 11 43 43 H 0.96999 * 119.99794 * 179.97438 * 20 19 17 44 44 H 1.09007 * 110.36733 * 94.70612 * 25 16 15 45 45 H 1.08998 * 110.37196 * 217.02776 * 25 16 15 46 46 H 0.96701 * 113.99675 * 61.44745 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.8801 -0.2702 2.4019 6 6 2.4216 -1.1042 3.2527 7 6 2.9579 -2.1697 2.5259 8 6 2.6905 -1.8798 1.1992 9 6 3.0526 -2.6928 0.0272 10 8 2.8665 -2.2600 -1.0942 11 7 3.5901 -3.9171 0.1964 12 6 3.7031 -4.4882 1.5408 13 6 4.0616 -4.6769 -0.9641 14 1 3.8779 -4.1243 -1.8856 15 6 5.5600 -5.0178 -0.8214 16 7 5.7461 -6.3864 -1.3248 17 6 6.9309 -7.0724 -1.3527 18 1 7.8330 -6.6072 -0.9835 19 6 6.9728 -8.3653 -1.8563 20 7 5.8737 -8.9317 -2.3076 21 14 8.5892 -9.3007 -1.8949 22 1 9.6682 -8.4479 -1.3348 23 1 8.4647 -10.5378 -1.0828 24 1 8.9197 -9.6604 -3.2972 25 6 4.4457 -6.8984 -1.7942 26 6 3.3904 -6.0748 -1.0146 27 1 3.2457 -6.4752 -0.0112 28 8 2.1526 -6.0232 -1.7267 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9563 0.8901 36 1 2.4464 -0.9905 4.3264 37 1 3.4734 -3.0347 2.9161 38 1 4.6141 -4.1233 2.0152 39 1 2.8395 -4.1906 2.1356 40 1 3.7396 -5.5753 1.4719 41 1 5.8540 -4.9652 0.2269 42 1 6.1585 -4.3220 -1.4094 43 1 5.9030 -9.8350 -2.6598 44 1 4.3382 -6.7346 -2.8665 45 1 4.3483 -7.9585 -1.5599 46 1 1.7442 -6.8882 -1.8688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047392713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:13 Heat of formation + Delta-G solvation = 50.016774 kcal Electronic energy + Delta-G solvation = -28455.882336 eV Core-core repulsion = 24577.542295 eV Total energy + Delta-G solvation = -3878.340041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.67211 -39.79361 -37.81553 -36.09582 -35.19226 -34.81934 -32.22478 -30.87662 -30.45720 -28.51237 -27.53873 -27.45362 -26.88181 -24.70496 -23.36886 -22.68351 -21.40083 -20.54546 -19.62799 -19.04881 -17.44056 -17.15376 -16.91736 -16.21884 -16.02694 -15.64013 -15.08123 -14.95782 -14.79377 -14.34851 -14.08165 -13.89094 -13.42549 -13.23739 -13.16261 -12.99002 -12.86238 -12.52074 -12.47363 -12.32722 -11.82624 -11.77447 -11.60977 -11.49272 -11.40078 -11.29807 -11.03304 -10.89514 -10.60549 -10.20171 -10.01004 -9.83268 -9.75607 -9.32896 -9.26028 -9.05303 -8.77995 -8.46325 -6.99148 -5.77830 -3.21170 1.25342 2.25681 2.57025 3.08707 3.22289 3.33583 3.39722 3.41913 4.31607 4.34099 4.40265 4.62711 4.68254 4.78339 5.01021 5.08082 5.13977 5.23772 5.29860 5.34493 5.36083 5.43186 5.45658 5.47781 5.55804 5.59214 5.63116 5.65678 5.80137 5.86971 5.89041 5.93811 6.04714 6.08285 6.39810 6.44308 6.53042 6.71210 6.80613 7.27245 7.39250 7.48666 7.66198 7.99946 8.10251 8.15571 8.21941 9.07418 9.67925 10.29749 11.26118 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023922 B = 0.003054 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.202631 B = 9166.681933 C = 9509.683166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 C -0.156 4.156 4 N -0.250 5.250 5 N -0.278 5.278 6 C -0.011 4.011 7 C -0.206 4.206 8 C -0.030 4.030 9 C 0.590 3.410 10 O -0.542 6.542 11 N -0.580 5.580 12 C 0.057 3.943 13 C 0.138 3.862 14 H 0.114 0.886 15 C 0.131 3.869 16 N -0.598 5.598 17 C -0.224 4.224 18 H 0.081 0.919 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.918 3.082 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.128 3.872 26 C 0.064 3.936 27 H 0.063 0.937 28 O -0.564 6.564 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.137 0.863 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.184 0.816 37 H 0.177 0.823 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.034 0.966 42 H 0.033 0.967 43 H 0.253 0.747 44 H 0.026 0.974 45 H 0.113 0.887 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.688 13.554 9.423 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.025 3.975 3 C -0.214 4.214 4 N -0.038 5.038 5 N -0.110 5.110 6 C -0.186 4.186 7 C -0.235 4.235 8 C -0.159 4.159 9 C 0.377 3.623 10 O -0.420 6.420 11 N -0.311 5.311 12 C -0.085 4.085 13 C 0.035 3.965 14 H 0.132 0.868 15 C 0.004 3.996 16 N -0.326 5.326 17 C -0.352 4.352 18 H 0.099 0.901 19 C -0.205 4.205 20 N -0.571 5.571 21 Si 0.748 3.252 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.002 3.998 26 C 0.003 3.997 27 H 0.080 0.920 28 O -0.368 6.368 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.201 0.799 37 H 0.194 0.806 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.044 0.956 45 H 0.130 0.870 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -10.191 15.310 8.561 20.286 hybrid contribution 1.216 -1.894 0.143 2.255 sum -8.975 13.416 8.704 18.338 Atomic orbital electron populations 1.22120 0.93009 1.03142 1.03343 1.22117 0.95882 0.94624 0.84861 1.22073 1.01955 0.93941 1.03419 1.45980 1.37879 1.14314 1.05662 1.73085 1.21687 1.26246 0.89996 1.23595 1.02128 0.93065 0.99859 1.23053 1.06877 1.02607 0.90950 1.21412 1.06483 0.92109 0.95875 1.16914 0.77648 0.81067 0.86676 1.90706 1.55049 1.71247 1.25014 1.47399 1.59611 1.15656 1.08442 1.22488 1.02051 1.00806 0.83173 1.22238 0.94111 0.91566 0.88620 0.86815 1.21544 0.91371 0.88780 0.97903 1.44273 1.05603 1.09803 1.72938 1.19137 0.85650 0.95298 1.35146 0.90092 1.24810 0.97740 0.97241 1.00692 1.69753 1.25385 1.14651 1.47289 0.85951 0.82229 0.79645 0.77368 1.20426 1.21652 1.21647 1.22595 0.82019 1.00089 0.95091 1.23761 0.84922 0.95661 0.95319 0.91969 1.86440 1.37116 1.34376 1.78902 0.91425 0.90220 0.91952 0.84550 0.91985 0.90340 0.91137 0.79907 0.80605 0.91635 0.89689 0.89940 0.94829 0.94932 0.93589 0.95644 0.86954 0.77742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.47 37.15 0.35 -1.23 16 2 C 0.12 1.49 3.55 -67.94 -0.24 1.25 16 3 C -0.16 -1.52 9.28 37.16 0.34 -1.17 16 4 N -0.25 -3.37 3.10 -50.70 -0.16 -3.53 16 5 N -0.28 -3.57 11.49 30.59 0.35 -3.22 16 6 C -0.01 -0.12 12.03 -17.42 -0.21 -0.33 16 7 C -0.21 -2.37 8.87 -38.98 -0.35 -2.71 16 8 C -0.03 -0.43 6.79 -82.06 -0.56 -0.99 16 9 C 0.59 9.78 7.64 -12.64 -0.10 9.68 16 10 O -0.54 -10.32 13.79 5.25 0.07 -10.25 16 11 N -0.58 -9.22 2.88 -173.19 -0.50 -9.72 16 12 C 0.06 0.70 7.41 59.85 0.44 1.14 16 13 C 0.14 2.60 3.09 -66.09 -0.20 2.39 16 14 H 0.11 2.39 7.00 -51.92 -0.36 2.03 16 15 C 0.13 2.69 6.88 -3.07 -0.02 2.67 16 16 N -0.60 -14.70 3.39 -170.08 -0.58 -15.28 16 17 C -0.22 -6.00 10.27 -15.06 -0.15 -6.15 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -25.70 10.09 55.49 0.56 -25.14 16 21 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.13 2.97 5.62 -2.53 -0.01 2.96 16 26 C 0.06 1.21 3.93 -24.59 -0.10 1.12 16 27 H 0.06 1.11 6.15 -51.93 -0.32 0.79 16 28 O -0.56 -10.17 13.47 -35.23 -0.47 -10.65 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.14 1.89 5.35 -51.93 -0.28 1.61 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 36 H 0.18 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.18 1.58 4.60 -52.49 -0.24 1.34 16 38 H 0.07 0.70 7.38 -51.93 -0.38 0.31 16 39 H 0.08 0.87 5.27 -51.93 -0.27 0.60 16 40 H 0.08 1.05 6.13 -51.93 -0.32 0.73 16 41 H 0.03 0.65 7.07 -51.93 -0.37 0.28 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 45 H 0.11 2.87 5.88 -51.93 -0.31 2.56 16 46 H 0.38 5.25 9.11 45.56 0.42 5.66 16 LS Contribution 362.62 15.07 5.46 5.46 Total: -1.00 -32.56 362.62 -6.96 -39.52 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -5.78 Total: 8.25 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -0.90 Total: 8.27 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.32 Total: -56.90 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.40 Total: -20.89 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.56 -6.96 -39.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047392713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.539 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds