Wall clock time and date at job start Tue Mar 31 2020 13:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47444 * 2 1 4 4 N 1.46499 * 109.47302 * 120.00314 * 2 1 3 5 5 N 1.28446 * 125.18748 * 292.88903 * 4 2 1 6 6 C 1.30867 * 110.92386 * 180.02562 * 5 4 2 7 7 C 1.39679 * 107.86237 * 359.77499 * 6 5 4 8 8 C 1.36603 * 125.19246 * 112.91337 * 4 2 1 9 9 C 1.47162 * 126.88192 * 359.94656 * 8 4 2 10 10 O 1.21633 * 120.00135 * 7.18524 * 9 8 4 11 11 N 1.34774 * 119.99849 * 187.19098 * 9 8 4 12 12 C 1.46504 * 120.00259 * 5.50327 * 11 9 8 13 13 C 1.46501 * 120.00103 * 185.50334 * 11 9 8 14 14 H 1.09008 * 110.63989 * 358.31473 * 13 11 9 15 15 C 1.54328 * 110.72012 * 121.44939 * 13 11 9 16 16 N 1.47016 * 107.26976 * 140.55754 * 15 13 11 17 17 C 1.36939 * 125.64905 * 181.08463 * 16 15 13 18 18 H 1.08000 * 119.99824 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00022 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00082 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00045 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47092 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46927 * 120.00102 * 21 19 17 24 24 H 1.48495 * 109.47669 * 240.00119 * 21 19 17 25 25 C 1.47423 * 108.70472 * 1.06116 * 16 15 13 26 26 C 1.54906 * 104.83441 * 335.87213 * 25 16 15 27 27 H 1.09002 * 111.00222 * 278.93573 * 26 25 16 28 28 O 1.42900 * 111.01048 * 155.08066 * 26 25 16 29 29 H 1.09001 * 109.47101 * 299.99670 * 1 2 3 30 30 H 1.09000 * 109.47227 * 59.99606 * 1 2 3 31 31 H 1.09001 * 109.47329 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47101 * 240.00329 * 2 1 3 33 33 H 1.09001 * 109.47279 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47230 * 300.00391 * 3 2 1 35 35 H 1.09003 * 109.47059 * 60.00466 * 3 2 1 36 36 H 1.08000 * 126.06597 * 179.97438 * 6 5 4 37 37 H 1.07998 * 127.31812 * 180.23012 * 7 6 5 38 38 H 1.09000 * 109.46876 * 275.81488 * 12 11 9 39 39 H 1.09003 * 109.46805 * 35.80781 * 12 11 9 40 40 H 1.08993 * 109.47345 * 155.80932 * 12 11 9 41 41 H 1.09003 * 109.88084 * 21.14524 * 15 13 11 42 42 H 1.08993 * 110.01416 * 260.04963 * 15 13 11 43 43 H 0.96999 * 119.99794 * 179.97438 * 20 19 17 44 44 H 1.09007 * 110.36733 * 94.70612 * 25 16 15 45 45 H 1.08998 * 110.37196 * 217.02776 * 25 16 15 46 46 H 0.96701 * 113.99675 * 61.44745 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.8801 -0.2702 2.4019 6 6 2.4216 -1.1042 3.2527 7 6 2.9579 -2.1697 2.5259 8 6 2.6905 -1.8798 1.1992 9 6 3.0526 -2.6928 0.0272 10 8 2.8665 -2.2600 -1.0942 11 7 3.5901 -3.9171 0.1964 12 6 3.7031 -4.4882 1.5408 13 6 4.0616 -4.6769 -0.9641 14 1 3.8779 -4.1243 -1.8856 15 6 5.5600 -5.0178 -0.8214 16 7 5.7461 -6.3864 -1.3248 17 6 6.9309 -7.0724 -1.3527 18 1 7.8330 -6.6072 -0.9835 19 6 6.9728 -8.3653 -1.8563 20 7 5.8737 -8.9317 -2.3076 21 14 8.5892 -9.3007 -1.8949 22 1 9.6682 -8.4479 -1.3348 23 1 8.4647 -10.5378 -1.0828 24 1 8.9197 -9.6604 -3.2972 25 6 4.4457 -6.8984 -1.7942 26 6 3.3904 -6.0748 -1.0146 27 1 3.2457 -6.4752 -0.0112 28 8 2.1526 -6.0232 -1.7267 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9563 0.8901 36 1 2.4464 -0.9905 4.3264 37 1 3.4734 -3.0347 2.9161 38 1 4.6141 -4.1233 2.0152 39 1 2.8395 -4.1906 2.1356 40 1 3.7396 -5.5753 1.4719 41 1 5.8540 -4.9652 0.2269 42 1 6.1585 -4.3220 -1.4094 43 1 5.9030 -9.8350 -2.6598 44 1 4.3382 -6.7346 -2.8665 45 1 4.3483 -7.9585 -1.5599 46 1 1.7442 -6.8882 -1.8688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047392713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:12 Heat of formation + Delta-G solvation = 26.445912 kcal Electronic energy + Delta-G solvation = -28456.904446 eV Core-core repulsion = 24577.542295 eV Total energy + Delta-G solvation = -3879.362151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.61789 -41.14718 -39.34599 -37.11656 -36.70420 -36.17191 -33.99384 -32.13243 -31.34647 -30.18404 -28.97405 -28.31246 -28.14883 -26.49515 -24.46515 -23.71701 -22.53695 -22.30230 -21.01217 -20.11323 -19.04148 -18.74887 -18.14767 -17.55754 -17.10839 -17.04649 -16.50659 -16.03225 -15.95116 -15.72829 -15.46547 -15.11631 -14.84571 -14.81714 -14.29729 -14.07565 -13.99548 -13.85848 -13.56314 -13.30306 -13.22582 -13.19170 -13.09302 -12.78728 -12.73119 -12.65922 -12.43833 -12.33056 -11.99940 -11.93583 -11.55503 -11.46143 -11.12643 -10.90477 -10.76494 -10.25770 -9.97379 -9.75880 -8.97434 -7.81061 -5.27698 0.19855 1.24997 1.49423 1.50439 1.60502 1.68957 1.93854 2.07432 2.48020 3.04759 3.29696 3.32287 3.48057 3.64417 3.78203 3.85542 3.97123 3.99029 4.07942 4.16700 4.19945 4.25053 4.39158 4.47368 4.53922 4.56900 4.58985 4.63168 4.70175 4.81227 4.81587 4.85479 4.91122 4.95206 5.09821 5.13013 5.36441 5.37784 5.46225 5.59417 5.66991 5.80656 6.18338 6.20132 6.82256 6.87648 7.04505 7.12413 7.68999 8.31123 9.20898 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023922 B = 0.003054 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.202631 B = 9166.681933 C = 9509.683166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.117 3.883 3 C -0.147 4.147 4 N -0.258 5.258 5 N -0.289 5.289 6 C -0.008 4.008 7 C -0.189 4.189 8 C -0.061 4.061 9 C 0.585 3.415 10 O -0.578 6.578 11 N -0.580 5.580 12 C 0.050 3.950 13 C 0.150 3.850 14 H 0.086 0.914 15 C 0.134 3.866 16 N -0.616 5.616 17 C -0.239 4.239 18 H 0.086 0.914 19 C -0.062 4.062 20 N -0.947 5.947 21 Si 0.983 3.017 22 H -0.266 1.266 23 H -0.288 1.288 24 H -0.296 1.296 25 C 0.135 3.865 26 C 0.085 3.915 27 H 0.084 0.916 28 O -0.572 6.572 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.112 0.888 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.221 0.779 37 H 0.204 0.796 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.055 0.945 42 H 0.023 0.977 43 H 0.249 0.751 44 H -0.010 1.010 45 H 0.091 0.909 46 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.747 14.354 12.076 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 C -0.205 4.205 4 N -0.047 5.047 5 N -0.122 5.122 6 C -0.183 4.183 7 C -0.218 4.218 8 C -0.188 4.188 9 C 0.374 3.626 10 O -0.459 6.459 11 N -0.310 5.310 12 C -0.091 4.091 13 C 0.046 3.954 14 H 0.104 0.896 15 C 0.008 3.992 16 N -0.344 5.344 17 C -0.368 4.368 18 H 0.104 0.896 19 C -0.254 4.254 20 N -0.597 5.597 21 Si 0.811 3.189 22 H -0.191 1.191 23 H -0.214 1.214 24 H -0.223 1.223 25 C 0.009 3.991 26 C 0.024 3.976 27 H 0.101 0.899 28 O -0.379 6.379 29 H 0.090 0.910 30 H 0.119 0.881 31 H 0.064 0.936 32 H 0.130 0.870 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.237 0.763 37 H 0.220 0.780 38 H 0.105 0.895 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.059 0.941 44 H 0.008 0.992 45 H 0.109 0.891 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -10.262 16.120 11.247 22.174 hybrid contribution 1.211 -2.098 -0.671 2.513 sum -9.051 14.022 10.576 19.759 Atomic orbital electron populations 1.22072 0.91656 1.02434 1.04595 1.22185 0.96981 0.95274 0.83881 1.22027 1.01035 0.92801 1.04642 1.46146 1.38151 1.14288 1.06156 1.73091 1.22137 1.26920 0.90004 1.24269 1.00659 0.92066 1.01311 1.23419 1.05525 1.03228 0.89578 1.21288 1.08712 0.92911 0.95932 1.17293 0.77059 0.81169 0.87059 1.90690 1.56481 1.72041 1.26659 1.47368 1.59305 1.15416 1.08873 1.22802 1.04260 1.00563 0.81443 1.21774 0.93111 0.91434 0.89126 0.89611 1.21600 0.92508 0.86644 0.98494 1.44502 1.05512 1.11344 1.73037 1.19492 0.86678 0.95707 1.34902 0.89604 1.25622 1.00827 0.98177 1.00800 1.69971 1.27088 1.14609 1.48004 0.84950 0.78926 0.78302 0.76743 1.19053 1.21445 1.22336 1.22359 0.83374 0.99668 0.93675 1.23470 0.83983 0.94776 0.95387 0.89853 1.86415 1.36452 1.36096 1.78906 0.90954 0.88118 0.93561 0.86997 0.93285 0.88181 0.90774 0.76257 0.77983 0.89452 0.87295 0.90224 0.92698 0.95908 0.94081 0.99231 0.89146 0.75653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.47 71.98 0.68 -2.19 16 2 C 0.12 2.75 3.55 44.99 0.16 2.91 16 3 C -0.15 -2.75 9.28 71.98 0.67 -2.08 16 4 N -0.26 -6.71 3.10 -314.31 -0.97 -7.68 16 5 N -0.29 -6.80 11.49 -57.13 -0.66 -7.46 16 6 C -0.01 -0.14 12.03 85.18 1.02 0.88 16 7 C -0.19 -3.72 8.87 22.66 0.20 -3.52 16 8 C -0.06 -1.65 6.79 40.78 0.28 -1.37 16 9 C 0.59 19.27 7.64 86.59 0.66 19.93 16 10 O -0.58 -22.77 13.79 -4.14 -0.06 -22.83 16 11 N -0.58 -17.80 2.88 -820.11 -2.36 -20.16 16 12 C 0.05 1.07 7.41 127.77 0.95 2.01 16 13 C 0.15 5.69 3.09 46.18 0.14 5.83 16 14 H 0.09 3.76 7.00 -2.38 -0.02 3.74 16 15 C 0.13 5.49 6.88 86.73 0.60 6.08 16 16 N -0.62 -30.66 3.39 -692.00 -2.35 -33.01 16 17 C -0.24 -12.85 10.27 84.03 0.86 -11.99 16 18 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 19 C -0.06 -3.34 5.49 84.86 0.47 -2.87 16 20 N -0.95 -53.91 10.09 21.65 0.22 -53.70 16 21 Si 0.98 43.88 29.55 68.60 2.03 45.90 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 25 C 0.14 6.48 5.62 86.85 0.49 6.97 16 26 C 0.08 3.19 3.93 31.98 0.13 3.32 16 27 H 0.08 2.84 6.15 -2.39 -0.01 2.82 16 28 O -0.57 -20.57 13.47 -148.98 -2.01 -22.58 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.11 3.22 5.35 -2.39 -0.01 3.21 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 1.32 8.07 -2.39 -0.02 1.30 16 36 H 0.22 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.20 2.71 4.60 -2.91 -0.01 2.69 16 38 H 0.09 1.52 7.38 -2.39 -0.02 1.50 16 39 H 0.11 1.82 5.27 -2.39 -0.01 1.81 16 40 H 0.08 1.79 6.13 -2.39 -0.01 1.77 16 41 H 0.06 2.03 7.07 -2.39 -0.02 2.01 16 42 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 44 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 45 H 0.09 4.75 5.88 -2.39 -0.01 4.74 16 46 H 0.39 10.84 9.11 -74.06 -0.67 10.17 16 Total: -1.00 -72.51 362.62 1.48 -71.03 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.34 Total: 26.57 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: 7.30 Total: 23.92 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -6.12 Total: -122.01 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -2.06 Total: -45.41 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -72.51 1.48 -71.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047392713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.473 kcal (2) G-P(sol) polarization free energy of solvation -72.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds