Wall clock time and date at job start Tue Mar 31 2020 13:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47143 * 2 1 4 4 N 1.46497 * 109.47221 * 119.99928 * 2 1 3 5 5 C 1.35857 * 126.13354 * 300.02466 * 4 2 1 6 6 N 1.30170 * 109.00025 * 179.97438 * 5 4 2 7 7 C 1.35756 * 108.86882 * 359.97438 * 6 5 4 8 8 C 1.47325 * 126.23517 * 179.97438 * 7 6 5 9 9 O 1.21624 * 120.00158 * 186.32881 * 8 7 6 10 10 N 1.34783 * 119.99631 * 6.33511 * 8 7 6 11 11 C 1.46496 * 120.00157 * 5.37390 * 10 8 7 12 12 C 1.46507 * 119.99473 * 185.38079 * 10 8 7 13 13 H 1.08999 * 110.88869 * 0.70201 * 12 10 8 14 14 C 1.54916 * 111.00142 * 124.57948 * 12 10 8 15 15 N 1.47420 * 104.82705 * 155.08155 * 14 12 10 16 16 C 1.36943 * 125.64544 * 155.83430 * 15 14 12 17 17 H 1.07997 * 119.99940 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00031 * 179.97438 * 16 15 14 19 19 N 1.31616 * 119.99881 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99940 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47386 * 90.00092 * 20 18 16 22 22 H 1.48506 * 109.46954 * 209.99975 * 20 18 16 23 23 H 1.48499 * 109.47251 * 329.99827 * 20 18 16 24 24 C 1.47020 * 108.70695 * 335.86811 * 15 14 12 25 25 C 1.54370 * 107.28875 * 1.09860 * 24 15 14 26 26 H 1.09006 * 110.69773 * 263.79295 * 25 24 15 27 27 O 1.42898 * 110.75879 * 140.50682 * 25 24 15 28 28 C 1.35379 * 126.13933 * 120.29580 * 4 2 1 29 29 H 1.08997 * 109.47005 * 300.00146 * 1 2 3 30 30 H 1.09005 * 109.46997 * 60.00014 * 1 2 3 31 31 H 1.08995 * 109.47071 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47005 * 239.99854 * 2 1 3 33 33 H 1.09000 * 109.47308 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47163 * 299.99884 * 3 2 1 35 35 H 1.09003 * 109.47308 * 59.99589 * 3 2 1 36 36 H 1.07998 * 125.49613 * 359.97438 * 5 4 2 37 37 H 1.08990 * 109.47386 * 275.37242 * 11 10 8 38 38 H 1.09000 * 109.46904 * 155.37231 * 11 10 8 39 39 H 1.09001 * 109.46857 * 35.38017 * 11 10 8 40 40 H 1.08997 * 110.36639 * 273.92166 * 14 12 10 41 41 H 1.08997 * 110.36570 * 36.24623 * 14 12 10 42 42 H 0.96998 * 120.00028 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.88060 * 120.47802 * 24 15 14 44 44 H 1.09002 * 109.88521 * 241.64230 * 24 15 14 45 45 H 0.96696 * 114.00199 * 66.47969 * 27 25 24 46 46 H 1.07998 * 126.56368 * 0.05748 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7678 -0.3370 2.4837 6 7 2.3629 -1.1792 3.2780 7 6 3.0160 -2.1035 2.5281 8 6 3.8141 -3.2321 3.0377 9 8 4.4471 -3.9268 2.2658 10 7 3.8426 -3.4948 4.3594 11 6 2.9897 -2.7342 5.2760 12 6 4.7269 -4.5408 4.8793 13 1 5.3004 -5.0004 4.0744 14 6 5.6636 -3.9803 5.9785 15 7 6.0188 -5.1492 6.8036 16 6 7.1420 -5.2677 7.5780 17 1 7.8575 -4.4598 7.6188 18 6 7.3604 -6.4260 8.3113 19 7 6.4882 -7.4104 8.2619 20 14 8.8921 -6.5874 9.3682 21 1 8.6087 -6.0737 10.7324 22 1 9.2889 -8.0161 9.4497 23 1 9.9965 -5.8007 8.7626 24 6 4.9680 -6.1669 6.6567 25 6 3.9224 -5.6074 5.6684 26 1 3.0932 -5.1461 6.2049 27 8 3.4515 -6.6348 4.7939 28 6 2.8045 -1.7925 1.2168 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.1711 0.5067 2.7976 37 1 3.4888 -1.8050 5.5502 38 1 2.8030 -3.3248 6.1729 39 1 2.0424 -2.5073 4.7868 40 1 6.5574 -3.5466 5.5302 41 1 5.1406 -3.2365 6.5796 42 1 6.6406 -8.2196 8.7746 43 1 5.3964 -7.0875 6.2603 44 1 4.5003 -6.3589 7.6224 45 1 2.9424 -7.3265 5.2380 46 1 3.1886 -2.3250 0.3593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047471957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:24 Heat of formation + Delta-G solvation = 22.635003 kcal Electronic energy + Delta-G solvation = -27769.531940 eV Core-core repulsion = 23890.004536 eV Total energy + Delta-G solvation = -3879.527404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.41018 -39.46418 -37.61912 -36.35786 -35.02749 -34.57147 -31.90516 -31.29415 -29.78830 -28.35510 -27.93881 -27.20796 -26.31940 -24.54771 -23.47046 -22.92083 -20.69305 -20.31645 -20.01278 -18.72885 -17.51561 -16.94852 -16.89430 -16.08775 -15.84469 -15.74408 -15.01239 -14.74123 -14.61587 -14.28546 -14.07567 -13.91297 -13.58777 -13.47563 -12.97945 -12.90281 -12.68398 -12.64106 -12.51734 -12.21718 -12.07640 -11.99262 -11.84610 -11.67087 -11.29213 -11.11429 -10.80630 -10.71624 -10.19838 -10.09329 -9.94215 -9.78846 -9.73793 -9.57839 -9.14495 -8.74417 -8.62304 -8.07892 -6.83307 -5.69227 -3.03959 1.57811 2.33725 2.39093 3.38002 3.43785 3.48400 3.50697 3.73254 3.95941 4.27239 4.31416 4.38371 4.51528 4.52109 4.80630 4.88046 4.97145 5.06286 5.06884 5.15344 5.34984 5.39890 5.42946 5.50798 5.51790 5.60144 5.70738 5.81612 5.90804 5.99124 6.05358 6.15040 6.25151 6.26968 6.43791 6.63408 6.79606 6.84046 7.10738 7.44858 7.56216 7.66079 7.80432 7.87454 8.24688 8.32097 8.57834 9.21727 9.81897 10.46054 11.42204 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030104 B = 0.002597 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.885470 B =10779.558546 C =11104.242102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.125 3.875 3 C -0.164 4.164 4 N -0.453 5.453 5 C 0.180 3.820 6 N -0.456 5.456 7 C -0.051 4.051 8 C 0.599 3.401 9 O -0.546 6.546 10 N -0.587 5.587 11 C 0.089 3.911 12 C 0.134 3.866 13 H 0.113 0.887 14 C 0.133 3.867 15 N -0.600 5.600 16 C -0.227 4.227 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 0.915 3.085 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.154 3.846 25 C 0.064 3.936 26 H 0.057 0.943 27 O -0.560 6.560 28 C 0.030 3.970 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.205 0.795 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.028 0.972 42 H 0.253 0.747 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.372 0.628 46 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.764 17.333 -16.024 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.022 3.978 3 C -0.222 4.222 4 N -0.136 5.136 5 C -0.103 4.103 6 N -0.175 5.175 7 C -0.180 4.180 8 C 0.387 3.613 9 O -0.423 6.423 10 N -0.318 5.318 11 C -0.054 4.054 12 C 0.030 3.970 13 H 0.131 0.869 14 C 0.005 3.995 15 N -0.328 5.328 16 C -0.355 4.355 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.028 3.972 25 C 0.004 3.996 26 H 0.074 0.926 27 O -0.364 6.364 28 C -0.108 4.108 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.222 0.778 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.218 0.782 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -15.072 17.243 -15.961 27.915 hybrid contribution 0.386 -0.366 0.282 0.602 sum -14.687 16.877 -15.679 27.320 Atomic orbital electron populations 1.22184 0.92876 1.03510 1.03556 1.21556 0.95712 0.94184 0.86321 1.22190 1.02443 0.93980 1.03551 1.45632 1.37657 1.22156 1.08173 1.25097 1.04307 1.02134 0.78794 1.70879 1.10788 1.03890 1.31922 1.20602 1.07024 1.00030 0.90370 1.16935 0.80227 0.82095 0.82054 1.90784 1.45375 1.49890 1.56262 1.47507 1.41546 1.36413 1.06293 1.21889 0.95059 0.95087 0.93325 1.22383 0.90631 0.86476 0.97489 0.86866 1.21773 0.95831 0.91251 0.90605 1.44247 1.22954 1.13295 1.52258 1.19080 0.96959 1.00766 1.18720 0.90171 1.24821 0.98815 0.96340 1.00486 1.69942 1.35676 1.06527 1.44901 0.86069 0.82264 0.76940 0.80190 1.21598 1.21659 1.20628 1.21832 0.87307 0.92628 0.95406 1.23584 0.96210 0.88440 0.91372 0.92551 1.86508 1.74733 1.37643 1.37511 1.22572 0.97715 0.90782 0.99740 0.91429 0.90278 0.91511 0.87909 0.91494 0.90283 0.91426 0.77823 0.92499 0.91912 0.89747 0.93445 0.95486 0.93698 0.92226 0.93497 0.78184 0.79751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.54 9.24 37.16 0.34 -0.20 16 2 C 0.12 0.56 3.57 -67.93 -0.24 0.32 16 3 C -0.16 -0.56 9.24 37.16 0.34 -0.22 16 4 N -0.45 -3.75 2.59 -111.25 -0.29 -4.04 16 5 C 0.18 1.64 11.53 -89.90 -1.04 0.60 16 6 N -0.46 -5.94 8.05 -11.03 -0.09 -6.03 16 7 C -0.05 -0.77 6.58 -83.09 -0.55 -1.31 16 8 C 0.60 11.27 7.66 -12.56 -0.10 11.17 16 9 O -0.55 -11.86 16.28 5.26 0.09 -11.78 16 10 N -0.59 -10.89 2.91 -172.78 -0.50 -11.40 16 11 C 0.09 1.38 7.95 59.84 0.48 1.86 16 12 C 0.13 2.86 3.17 -65.78 -0.21 2.65 16 13 H 0.11 2.73 7.02 -51.93 -0.36 2.37 16 14 C 0.13 2.99 6.81 -2.53 -0.02 2.97 16 15 N -0.60 -15.98 3.39 -170.04 -0.58 -16.55 16 16 C -0.23 -6.50 10.28 -15.06 -0.15 -6.66 16 17 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 18 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 19 N -0.92 -27.50 10.31 55.49 0.57 -26.93 16 20 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.15 3.88 5.15 -3.04 -0.02 3.86 16 25 C 0.06 1.34 3.87 -24.87 -0.10 1.25 16 26 H 0.06 1.08 6.26 -51.93 -0.32 0.76 16 27 O -0.56 -11.28 13.39 -35.23 -0.47 -11.75 16 28 C 0.03 0.35 11.22 -16.64 -0.19 0.16 16 29 H 0.07 0.21 7.94 -51.93 -0.41 -0.20 16 30 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.38 8.07 -51.93 -0.42 -0.04 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 35 H 0.07 0.22 7.94 -51.93 -0.41 -0.19 16 36 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 38 H 0.06 0.96 6.27 -51.93 -0.33 0.64 16 39 H 0.08 1.23 5.92 -51.93 -0.31 0.93 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.03 0.59 7.15 -51.93 -0.37 0.21 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.06 1.68 7.30 -51.93 -0.38 1.31 16 44 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 45 H 0.37 5.80 9.12 45.56 0.42 6.22 16 46 H 0.19 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 371.12 15.07 5.59 5.59 Total: -1.00 -36.58 371.12 -8.45 -45.03 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.22 Total: 4.23 kcal Atomic # 6 Polarization: 17.65 SS G_CDS: -1.53 Total: 16.12 kcal Atomic # 7 Polarization: -64.05 SS G_CDS: -0.88 Total: -64.94 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.39 Total: -23.53 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.58 -8.45 -45.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047471957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.668 kcal (2) G-P(sol) polarization free energy of solvation -36.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds