Wall clock time and date at job start Tue Mar 31 2020 13:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47143 * 2 1 4 4 N 1.46497 * 109.47221 * 119.99928 * 2 1 3 5 5 C 1.35857 * 126.13354 * 300.02466 * 4 2 1 6 6 N 1.30170 * 109.00025 * 179.97438 * 5 4 2 7 7 C 1.35756 * 108.86882 * 359.97438 * 6 5 4 8 8 C 1.47325 * 126.23517 * 179.97438 * 7 6 5 9 9 O 1.21624 * 120.00158 * 186.32881 * 8 7 6 10 10 N 1.34783 * 119.99631 * 6.33511 * 8 7 6 11 11 C 1.46496 * 120.00157 * 5.37390 * 10 8 7 12 12 C 1.46507 * 119.99473 * 185.38079 * 10 8 7 13 13 H 1.08999 * 110.88869 * 0.70201 * 12 10 8 14 14 C 1.54916 * 111.00142 * 124.57948 * 12 10 8 15 15 N 1.47420 * 104.82705 * 155.08155 * 14 12 10 16 16 C 1.36943 * 125.64544 * 155.83430 * 15 14 12 17 17 H 1.07997 * 119.99940 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00031 * 179.97438 * 16 15 14 19 19 N 1.31616 * 119.99881 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99940 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47386 * 90.00092 * 20 18 16 22 22 H 1.48506 * 109.46954 * 209.99975 * 20 18 16 23 23 H 1.48499 * 109.47251 * 329.99827 * 20 18 16 24 24 C 1.47020 * 108.70695 * 335.86811 * 15 14 12 25 25 C 1.54370 * 107.28875 * 1.09860 * 24 15 14 26 26 H 1.09006 * 110.69773 * 263.79295 * 25 24 15 27 27 O 1.42898 * 110.75879 * 140.50682 * 25 24 15 28 28 C 1.35379 * 126.13933 * 120.29580 * 4 2 1 29 29 H 1.08997 * 109.47005 * 300.00146 * 1 2 3 30 30 H 1.09005 * 109.46997 * 60.00014 * 1 2 3 31 31 H 1.08995 * 109.47071 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47005 * 239.99854 * 2 1 3 33 33 H 1.09000 * 109.47308 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47163 * 299.99884 * 3 2 1 35 35 H 1.09003 * 109.47308 * 59.99589 * 3 2 1 36 36 H 1.07998 * 125.49613 * 359.97438 * 5 4 2 37 37 H 1.08990 * 109.47386 * 275.37242 * 11 10 8 38 38 H 1.09000 * 109.46904 * 155.37231 * 11 10 8 39 39 H 1.09001 * 109.46857 * 35.38017 * 11 10 8 40 40 H 1.08997 * 110.36639 * 273.92166 * 14 12 10 41 41 H 1.08997 * 110.36570 * 36.24623 * 14 12 10 42 42 H 0.96998 * 120.00028 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.88060 * 120.47802 * 24 15 14 44 44 H 1.09002 * 109.88521 * 241.64230 * 24 15 14 45 45 H 0.96696 * 114.00199 * 66.47969 * 27 25 24 46 46 H 1.07998 * 126.56368 * 0.05748 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7678 -0.3370 2.4837 6 7 2.3629 -1.1792 3.2780 7 6 3.0160 -2.1035 2.5281 8 6 3.8141 -3.2321 3.0377 9 8 4.4471 -3.9268 2.2658 10 7 3.8426 -3.4948 4.3594 11 6 2.9897 -2.7342 5.2760 12 6 4.7269 -4.5408 4.8793 13 1 5.3004 -5.0004 4.0744 14 6 5.6636 -3.9803 5.9785 15 7 6.0188 -5.1492 6.8036 16 6 7.1420 -5.2677 7.5780 17 1 7.8575 -4.4598 7.6188 18 6 7.3604 -6.4260 8.3113 19 7 6.4882 -7.4104 8.2619 20 14 8.8921 -6.5874 9.3682 21 1 8.6087 -6.0737 10.7324 22 1 9.2889 -8.0161 9.4497 23 1 9.9965 -5.8007 8.7626 24 6 4.9680 -6.1669 6.6567 25 6 3.9224 -5.6074 5.6684 26 1 3.0932 -5.1461 6.2049 27 8 3.4515 -6.6348 4.7939 28 6 2.8045 -1.7925 1.2168 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.1711 0.5067 2.7976 37 1 3.4888 -1.8050 5.5502 38 1 2.8030 -3.3248 6.1729 39 1 2.0424 -2.5073 4.7868 40 1 6.5574 -3.5466 5.5302 41 1 5.1406 -3.2365 6.5796 42 1 6.6406 -8.2196 8.7746 43 1 5.3964 -7.0875 6.2603 44 1 4.5003 -6.3589 7.6224 45 1 2.9424 -7.3265 5.2380 46 1 3.1886 -2.3250 0.3593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047471957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:23 Heat of formation + Delta-G solvation = -3.179215 kcal Electronic energy + Delta-G solvation = -27770.651329 eV Core-core repulsion = 23890.004536 eV Total energy + Delta-G solvation = -3880.646793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.23446 -40.99210 -39.28778 -36.94093 -36.73049 -36.24102 -33.84053 -32.08248 -30.95884 -30.06525 -28.98687 -28.16795 -27.73527 -26.44504 -24.34918 -23.94375 -22.29788 -21.55377 -21.32627 -20.10077 -19.00296 -18.51878 -18.16465 -17.54142 -17.14263 -16.75046 -16.61083 -15.88687 -15.73765 -15.70620 -15.23489 -14.90652 -14.78103 -14.51322 -14.50679 -14.22888 -14.00832 -13.84777 -13.61709 -13.19639 -13.15506 -13.15012 -13.08137 -12.99439 -12.73529 -12.63963 -12.34745 -12.09663 -12.07677 -11.88457 -11.59713 -11.31916 -10.93432 -10.83615 -10.77240 -10.64441 -9.81235 -9.47775 -8.96649 -7.87809 -5.26273 0.56929 1.45886 1.48459 1.49086 1.57551 1.64031 2.03007 2.47045 2.51904 3.12675 3.32886 3.38381 3.57930 3.60367 3.85014 3.85897 3.97301 3.99195 4.07811 4.10479 4.15788 4.38459 4.45446 4.46603 4.51163 4.67409 4.71119 4.76992 4.82168 4.85822 4.87894 4.98493 5.06036 5.13861 5.26772 5.28234 5.35957 5.42559 5.47787 5.59226 5.64474 6.11698 6.15527 6.43518 6.83456 6.84643 7.03418 7.19327 7.68028 8.31864 9.22178 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030104 B = 0.002597 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.885470 B =10779.558546 C =11104.242102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 C -0.160 4.160 4 N -0.442 5.442 5 C 0.198 3.802 6 N -0.484 5.484 7 C -0.090 4.090 8 C 0.592 3.408 9 O -0.589 6.589 10 N -0.589 5.589 11 C 0.095 3.905 12 C 0.145 3.855 13 H 0.079 0.921 14 C 0.137 3.863 15 N -0.621 5.621 16 C -0.247 4.247 17 H 0.086 0.914 18 C -0.064 4.064 19 N -0.950 5.950 20 Si 0.985 3.015 21 H -0.281 1.281 22 H -0.294 1.294 23 H -0.270 1.270 24 C 0.167 3.833 25 C 0.083 3.917 26 H 0.083 0.917 27 O -0.570 6.570 28 C 0.043 3.957 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.111 0.889 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.246 0.754 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.041 0.959 41 H 0.047 0.953 42 H 0.249 0.751 43 H 0.020 0.980 44 H 0.026 0.974 45 H 0.392 0.608 46 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.454 20.166 -16.762 31.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.019 3.981 3 C -0.218 4.218 4 N -0.124 5.124 5 C -0.086 4.086 6 N -0.203 5.203 7 C -0.217 4.217 8 C 0.382 3.618 9 O -0.470 6.470 10 N -0.319 5.319 11 C -0.046 4.046 12 C 0.040 3.960 13 H 0.097 0.903 14 C 0.010 3.990 15 N -0.348 5.348 16 C -0.375 4.375 17 H 0.103 0.897 18 C -0.257 4.257 19 N -0.599 5.599 20 Si 0.812 3.188 21 H -0.207 1.207 22 H -0.220 1.220 23 H -0.195 1.195 24 C 0.041 3.959 25 C 0.023 3.977 26 H 0.101 0.899 27 O -0.377 6.377 28 C -0.099 4.099 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.071 0.929 32 H 0.129 0.871 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.262 0.738 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.038 0.962 44 H 0.044 0.956 45 H 0.241 0.759 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -16.807 20.125 -16.711 31.092 hybrid contribution 0.832 -1.149 0.390 1.471 sum -15.975 18.976 -16.321 29.693 Atomic orbital electron populations 1.22178 0.91493 1.03032 1.04982 1.21921 0.96676 0.94588 0.84960 1.22186 1.01438 0.93158 1.04978 1.45901 1.36173 1.20933 1.09354 1.25836 1.02569 1.01661 0.78575 1.70746 1.11962 1.04562 1.33060 1.20151 1.09299 1.00454 0.91836 1.17549 0.79946 0.82656 0.81600 1.90741 1.47350 1.51738 1.57169 1.47539 1.41415 1.35946 1.06981 1.21987 0.95097 0.94775 0.92774 1.21927 0.90829 0.87360 0.95898 0.90304 1.21829 0.96109 0.90409 0.90618 1.44517 1.22964 1.14748 1.52597 1.19476 0.97854 1.01151 1.19035 0.89656 1.25723 1.01996 0.96055 1.01974 1.70153 1.37348 1.06786 1.45603 0.84989 0.78707 0.76562 0.78499 1.20734 1.22009 1.19498 1.21573 0.87801 0.91365 0.95190 1.23337 0.95669 0.88330 0.90382 0.89911 1.86475 1.75044 1.38313 1.37870 1.22680 0.97095 0.91290 0.98817 0.90725 0.88192 0.92899 0.87071 0.93027 0.88168 0.90752 0.73803 0.91911 0.91702 0.88461 0.94016 0.93520 0.94148 0.96185 0.95598 0.75861 0.78978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.48 9.24 71.98 0.67 0.18 16 2 C 0.12 0.69 3.57 44.99 0.16 0.85 16 3 C -0.16 -0.54 9.24 71.98 0.67 0.13 16 4 N -0.44 -6.16 2.59 -505.88 -1.31 -7.47 16 5 C 0.20 2.98 11.53 180.10 2.08 5.06 16 6 N -0.48 -11.72 8.05 -188.82 -1.52 -13.24 16 7 C -0.09 -2.63 6.58 40.50 0.27 -2.36 16 8 C 0.59 22.70 7.66 86.63 0.66 23.37 16 9 O -0.59 -26.72 16.28 -4.11 -0.07 -26.79 16 10 N -0.59 -21.98 2.91 -818.80 -2.38 -24.36 16 11 C 0.10 2.84 7.95 127.77 1.02 3.86 16 12 C 0.15 6.34 3.17 46.38 0.15 6.49 16 13 H 0.08 4.01 7.02 -2.39 -0.02 3.99 16 14 C 0.14 6.26 6.81 86.86 0.59 6.85 16 15 N -0.62 -33.93 3.39 -691.90 -2.35 -36.28 16 16 C -0.25 -14.38 10.28 84.03 0.86 -13.52 16 17 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 18 C -0.06 -3.76 5.49 84.86 0.47 -3.30 16 19 N -0.95 -58.26 10.31 21.65 0.22 -58.04 16 20 Si 0.98 46.85 29.55 68.60 2.03 48.87 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 24 C 0.17 8.71 5.15 86.75 0.45 9.15 16 25 C 0.08 3.53 3.87 31.80 0.12 3.65 16 26 H 0.08 3.10 6.26 -2.38 -0.01 3.09 16 27 O -0.57 -23.24 13.39 -148.98 -1.99 -25.24 16 28 C 0.04 0.94 11.22 83.72 0.94 1.88 16 29 H 0.07 0.15 7.94 -2.39 -0.02 0.13 16 30 H 0.10 -0.06 8.14 -2.38 -0.02 -0.08 16 31 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.11 0.50 8.07 -2.39 -0.02 0.48 16 33 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.10 -0.04 8.14 -2.38 -0.02 -0.06 16 35 H 0.07 0.17 7.94 -2.39 -0.02 0.16 16 36 H 0.25 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.06 1.80 8.12 -2.39 -0.02 1.78 16 38 H 0.06 1.88 6.27 -2.39 -0.01 1.87 16 39 H 0.10 2.69 5.92 -2.39 -0.01 2.68 16 40 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.05 1.98 7.15 -2.39 -0.02 1.96 16 42 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 43 H 0.02 1.19 7.30 -2.39 -0.02 1.17 16 44 H 0.03 1.44 7.51 -2.39 -0.02 1.42 16 45 H 0.39 12.21 9.12 -74.06 -0.68 11.53 16 46 H 0.19 3.79 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -82.80 371.12 2.04 -80.76 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.32 Total: 19.48 kcal Atomic # 6 Polarization: 33.20 SS G_CDS: 9.09 Total: 42.29 kcal Atomic # 7 Polarization: -132.05 SS G_CDS: -7.34 Total: -139.39 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -2.06 Total: -52.02 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -82.80 2.04 -80.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047471957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.585 kcal (2) G-P(sol) polarization free energy of solvation -82.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds