Wall clock time and date at job start Tue Mar 31 2020 13:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47123 * 2 1 4 4 N 1.46498 * 109.47134 * 120.00434 * 2 1 3 5 5 C 1.34263 * 125.75217 * 275.30614 * 4 2 1 6 6 C 1.38042 * 107.41550 * 180.11176 * 5 4 2 7 7 C 1.47435 * 126.41219 * 179.86793 * 6 5 4 8 8 O 1.21601 * 119.99756 * 18.67525 * 7 6 5 9 9 N 1.34780 * 119.99781 * 198.66889 * 7 6 5 10 10 C 1.46493 * 120.00263 * 358.42281 * 9 7 6 11 11 C 1.46501 * 119.99690 * 178.42722 * 9 7 6 12 12 H 1.09000 * 110.64256 * 358.30794 * 11 9 7 13 13 C 1.54319 * 110.72235 * 121.45429 * 11 9 7 14 14 N 1.47020 * 107.27393 * 140.73144 * 13 11 9 15 15 C 1.36933 * 125.64984 * 181.02449 * 14 13 11 16 16 H 1.08003 * 120.00362 * 16.91630 * 15 14 13 17 17 C 1.38815 * 119.99989 * 196.91739 * 15 14 13 18 18 N 1.31617 * 119.99893 * 202.81498 * 17 15 14 19 19 Si 1.86800 * 119.99772 * 22.53799 * 17 15 14 20 20 H 1.48497 * 109.47200 * 270.27286 * 19 17 15 21 21 H 1.48505 * 109.47261 * 30.28055 * 19 17 15 22 22 H 1.48504 * 109.46839 * 150.27468 * 19 17 15 23 23 C 1.47424 * 108.69943 * 1.28240 * 14 13 11 24 24 C 1.55120 * 104.72719 * 335.55791 * 23 14 13 25 25 H 1.09000 * 111.19166 * 279.18758 * 24 23 14 26 26 O 1.42897 * 110.94127 * 155.28655 * 24 23 14 27 27 C 1.41286 * 107.17424 * 359.60625 * 6 5 4 28 28 N 1.30450 * 108.02012 * 0.24326 * 27 6 5 29 29 H 1.08993 * 109.47270 * 59.99702 * 1 2 3 30 30 H 1.09002 * 109.47256 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46735 * 299.99784 * 1 2 3 32 32 H 1.08997 * 109.46599 * 240.00145 * 2 1 3 33 33 H 1.09000 * 109.46912 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47232 * 300.00468 * 3 2 1 35 35 H 1.09007 * 109.47139 * 60.00464 * 3 2 1 36 36 H 1.07996 * 126.29172 * 359.95898 * 5 4 2 37 37 H 1.08999 * 109.47495 * 275.93209 * 10 9 7 38 38 H 1.09002 * 109.47286 * 35.92844 * 10 9 7 39 39 H 1.08996 * 109.47635 * 155.92901 * 10 9 7 40 40 H 1.09003 * 109.87987 * 21.31378 * 13 11 9 41 41 H 1.09007 * 109.88277 * 260.15299 * 13 11 9 42 42 H 0.96996 * 120.00166 * 354.62510 * 18 17 15 43 43 H 1.09004 * 110.36187 * 94.48721 * 23 14 13 44 44 H 1.08997 * 110.36738 * 216.80118 * 23 14 13 45 45 H 0.96701 * 113.99971 * 67.95750 * 26 24 23 46 46 H 1.07994 * 125.99673 * 180.23884 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1849 -0.1378 2.4082 6 6 2.6619 -1.1227 3.2496 7 6 2.9925 -0.9688 4.6781 8 8 2.5491 -0.0271 5.3068 9 7 3.7861 -1.8720 5.2873 10 6 4.2921 -3.0253 4.5389 11 6 4.1426 -1.7005 6.6978 12 1 3.7105 -0.7817 7.0944 13 6 3.6892 -2.9198 7.5279 14 7 4.7472 -3.1970 8.5104 15 6 4.7391 -4.2149 9.4262 16 1 4.0638 -5.0485 9.3012 17 6 5.5988 -4.1755 10.5153 18 7 5.9309 -5.2898 11.1322 19 14 6.2905 -2.5420 11.1006 20 1 7.5652 -2.2619 10.3923 21 1 5.3155 -1.4597 10.8120 22 1 6.5404 -2.6058 12.5631 23 6 5.8153 -2.1935 8.3504 24 6 5.6831 -1.7072 6.8834 25 1 6.1567 -2.4049 6.1928 26 8 6.2232 -0.3931 6.7303 27 6 2.7683 -2.3073 2.4870 28 7 2.3838 -2.0395 1.2696 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6768 1.9563 0.8901 36 1 1.9849 0.8894 2.6752 37 1 3.5426 -3.8167 4.5404 38 1 4.5038 -2.7275 3.5119 39 1 5.2062 -3.3898 5.0073 40 1 3.5538 -3.7826 6.8756 41 1 2.7558 -2.6916 8.0426 42 1 5.5155 -6.1281 10.8764 43 1 5.6640 -1.3650 9.0423 44 1 6.7919 -2.6500 8.5118 45 1 7.1831 -0.3475 6.8376 46 1 3.1084 -3.2665 2.8485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047593459.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:15 Heat of formation + Delta-G solvation = 14.390909 kcal Electronic energy + Delta-G solvation = -27936.803404 eV Core-core repulsion = 24056.918510 eV Total energy + Delta-G solvation = -3879.884895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.58286 -41.02654 -39.37010 -36.88500 -36.82273 -36.30083 -34.21638 -31.75736 -31.51747 -30.20622 -29.35924 -28.28355 -28.03760 -26.06204 -24.59585 -23.18774 -22.67558 -21.70018 -20.96697 -20.45771 -19.61332 -18.87461 -18.25630 -17.72657 -17.05896 -16.65014 -16.29301 -16.13008 -15.94177 -15.71559 -15.54685 -15.34701 -15.07323 -14.61445 -14.40523 -14.20437 -13.98278 -13.90311 -13.76910 -13.49224 -13.29234 -13.25895 -13.10851 -12.74356 -12.63750 -12.54106 -12.38471 -12.34646 -11.94947 -11.86166 -11.63908 -11.41396 -11.10808 -10.86768 -10.64379 -10.58121 -9.85052 -9.58978 -9.21282 -8.61899 -5.51616 0.50513 1.12985 1.32896 1.38828 1.53999 1.69410 1.88640 2.32578 2.48739 2.86289 3.13451 3.37005 3.41703 3.64156 3.73281 3.76079 3.84717 3.87002 3.93370 4.00467 4.08041 4.18270 4.29195 4.34626 4.36729 4.56097 4.60564 4.62899 4.67816 4.70318 4.78027 4.80410 4.83488 4.86793 4.94374 4.97025 5.14323 5.18872 5.34666 5.47034 5.58128 5.87830 6.08338 6.37030 6.52682 6.76207 6.83207 7.16020 7.39270 8.05894 8.83756 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030013 B = 0.002817 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.689981 B = 9936.739204 C =10310.485776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 C -0.164 4.164 4 N -0.349 5.349 5 C 0.134 3.866 6 C -0.311 4.311 7 C 0.594 3.406 8 O -0.591 6.591 9 N -0.595 5.595 10 C 0.058 3.942 11 C 0.149 3.851 12 H 0.091 0.909 13 C 0.130 3.870 14 N -0.619 5.619 15 C -0.316 4.316 16 H 0.048 0.952 17 C -0.069 4.069 18 N -0.952 5.952 19 Si 1.101 2.899 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.304 1.304 23 C 0.074 3.926 24 C 0.099 3.901 25 H 0.096 0.904 26 O -0.565 6.565 27 C 0.073 3.927 28 N -0.318 5.318 29 H 0.106 0.894 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.114 0.886 33 H 0.062 0.938 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.199 0.801 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.051 0.949 41 H 0.022 0.978 42 H 0.251 0.749 43 H 0.036 0.964 44 H 0.062 0.938 45 H 0.398 0.602 46 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 12.664 -27.736 30.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 C -0.222 4.222 4 N -0.128 5.128 5 C -0.019 4.019 6 C -0.326 4.326 7 C 0.385 3.615 8 O -0.473 6.473 9 N -0.325 5.325 10 C -0.084 4.084 11 C 0.043 3.957 12 H 0.109 0.891 13 C 0.004 3.996 14 N -0.348 5.348 15 C -0.445 4.445 16 H 0.066 0.934 17 C -0.264 4.264 18 N -0.595 5.595 19 Si 0.928 3.072 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.232 1.232 23 C -0.052 4.052 24 C 0.038 3.962 25 H 0.113 0.887 26 O -0.372 6.372 27 C -0.113 4.113 28 N -0.137 5.137 29 H 0.125 0.875 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.132 0.868 33 H 0.081 0.919 34 H 0.128 0.872 35 H 0.088 0.912 36 H 0.215 0.785 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.040 0.960 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.080 0.920 45 H 0.248 0.752 46 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -5.395 13.485 -27.765 31.335 hybrid contribution -0.638 -1.180 0.655 1.493 sum -6.034 12.306 -27.110 30.377 Atomic orbital electron populations 1.22246 0.92390 1.02864 1.04482 1.21790 0.95753 0.93784 0.84396 1.22257 1.02100 0.92517 1.05322 1.49131 1.47617 1.07127 1.08923 1.23054 0.94136 1.00012 0.84734 1.20063 1.21563 0.96496 0.94435 1.17676 0.76890 0.80812 0.86111 1.90726 1.55340 1.33893 1.67344 1.47465 1.49330 1.25839 1.09870 1.22546 1.00654 0.87473 0.97681 1.21687 0.93936 0.98640 0.81394 0.89120 1.21675 0.91468 0.95348 0.91100 1.44628 1.18075 1.32674 1.39442 1.19934 1.23947 0.97309 1.03292 0.93381 1.27074 0.98974 1.06004 0.94329 1.71011 1.41147 0.98591 1.48783 0.83344 0.76726 0.72031 0.75115 1.18835 1.20411 1.23227 1.22825 0.93276 0.92320 0.96767 1.23192 0.93609 0.84796 0.94567 0.88696 1.86479 1.28519 1.27828 1.94369 1.25039 0.96726 0.99869 0.89710 1.77156 1.21648 0.93833 1.21097 0.87544 0.92975 0.92135 0.86849 0.91929 0.87180 0.91170 0.78468 0.90458 0.87977 0.90230 0.93078 0.96015 0.93975 0.94641 0.91990 0.75172 0.76397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.52 71.98 0.69 -0.66 16 2 C 0.14 1.43 3.91 44.99 0.18 1.60 16 3 C -0.16 -0.98 8.83 71.98 0.64 -0.35 16 4 N -0.35 -6.18 3.49 -325.76 -1.14 -7.32 16 5 C 0.13 2.73 10.45 84.27 0.88 3.61 16 6 C -0.31 -7.70 5.81 -20.15 -0.12 -7.82 16 7 C 0.59 18.92 7.66 86.67 0.66 19.58 16 8 O -0.59 -23.41 16.32 -4.03 -0.07 -23.47 16 9 N -0.59 -17.73 2.89 -819.84 -2.37 -20.09 16 10 C 0.06 1.22 7.51 127.77 0.96 2.18 16 11 C 0.15 5.38 3.08 46.18 0.14 5.52 16 12 H 0.09 3.79 6.99 -2.39 -0.02 3.77 16 13 C 0.13 5.38 6.88 86.73 0.60 5.98 16 14 N -0.62 -30.06 3.23 -691.57 -2.23 -32.29 16 15 C -0.32 -18.20 10.44 84.03 0.88 -17.32 16 16 H 0.05 2.97 8.06 -2.91 -0.02 2.95 16 17 C -0.07 -4.07 5.43 84.86 0.46 -3.61 16 18 N -0.95 -60.24 13.70 21.65 0.30 -59.94 16 19 Si 1.10 53.65 24.69 68.60 1.69 55.34 16 20 H -0.26 -11.39 6.70 99.48 0.67 -10.72 16 21 H -0.28 -13.09 6.24 99.48 0.62 -12.47 16 22 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 23 C 0.07 3.08 4.45 86.93 0.39 3.46 16 24 C 0.10 3.31 3.95 32.06 0.13 3.43 16 25 H 0.10 2.75 6.17 -2.39 -0.01 2.73 16 26 O -0.56 -17.09 13.47 -148.98 -2.01 -19.09 16 27 C 0.07 1.52 9.74 85.65 0.83 2.35 16 28 N -0.32 -6.79 12.50 -56.28 -0.70 -7.49 16 29 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.07 0.44 7.13 -2.38 -0.02 0.42 16 36 H 0.20 3.32 7.24 -2.91 -0.02 3.30 16 37 H 0.08 1.41 7.33 -2.39 -0.02 1.39 16 38 H 0.10 1.71 5.24 -2.39 -0.01 1.70 16 39 H 0.08 1.70 6.15 -2.39 -0.01 1.68 16 40 H 0.05 1.97 7.08 -2.39 -0.02 1.96 16 41 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.25 15.90 8.73 -92.71 -0.81 15.09 16 43 H 0.04 1.57 5.42 -2.39 -0.01 1.55 16 44 H 0.06 2.61 6.54 -2.39 -0.02 2.59 16 45 H 0.40 8.00 9.12 -74.06 -0.68 7.33 16 46 H 0.22 3.41 4.96 -2.91 -0.01 3.39 16 Total: -1.00 -81.07 361.14 0.96 -80.11 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.18 Total: 16.29 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 7.31 Total: 17.97 kcal Atomic # 7 Polarization: -121.00 SS G_CDS: -6.14 Total: -127.14 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -2.07 Total: -42.56 kcal Atomic # 14 Polarization: 53.65 SS G_CDS: 1.69 Total: 55.34 kcal Total: -81.07 0.96 -80.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047593459.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.499 kcal (2) G-P(sol) polarization free energy of solvation -81.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds