Wall clock time and date at job start Tue Mar 31 2020 13:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47397 * 2 1 4 4 N 1.46506 * 109.46862 * 119.99962 * 2 1 3 5 5 N 1.28441 * 125.18866 * 335.75987 * 4 2 1 6 6 C 1.30864 * 110.92963 * 180.02562 * 5 4 2 7 7 C 1.39678 * 107.85467 * 359.77221 * 6 5 4 8 8 C 1.36594 * 125.19163 * 155.78484 * 4 2 1 9 9 C 1.47168 * 126.88421 * 359.94580 * 8 4 2 10 10 O 1.21626 * 120.00089 * 186.94730 * 9 8 4 11 11 N 1.34780 * 119.99833 * 6.94117 * 9 8 4 12 12 C 1.46498 * 119.99904 * 176.96745 * 11 9 8 13 13 C 1.52996 * 109.47138 * 184.47135 * 12 11 9 14 14 H 1.08997 * 109.68241 * 51.66539 * 13 12 11 15 15 C 1.53302 * 109.68110 * 291.11094 * 13 12 11 16 16 O 1.42960 * 109.22525 * 187.97844 * 15 13 12 17 17 C 1.42957 * 114.16707 * 62.57602 * 16 15 13 18 18 C 1.53287 * 109.22683 * 297.42110 * 17 16 15 19 19 N 1.47149 * 109.68396 * 172.18877 * 13 12 11 20 20 C 1.36941 * 120.97920 * 349.97644 * 19 13 12 21 21 H 1.08000 * 119.99649 * 37.61512 * 20 19 13 22 22 C 1.38813 * 120.00185 * 217.60864 * 20 19 13 23 23 N 1.31624 * 119.99885 * 18.22592 * 22 20 19 24 24 Si 1.86792 * 120.00113 * 198.22692 * 22 20 19 25 25 H 1.48496 * 109.47454 * 64.99685 * 24 22 20 26 26 H 1.48508 * 109.46934 * 185.00027 * 24 22 20 27 27 H 1.48505 * 109.47030 * 304.99666 * 24 22 20 28 28 H 1.08992 * 109.47209 * 300.00476 * 1 2 3 29 29 H 1.09004 * 109.46757 * 59.99970 * 1 2 3 30 30 H 1.08994 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47613 * 239.99411 * 2 1 3 32 32 H 1.09000 * 109.47825 * 184.38020 * 3 2 1 33 33 H 1.09008 * 109.47191 * 304.38166 * 3 2 1 34 34 H 1.09000 * 109.47605 * 64.37501 * 3 2 1 35 35 H 1.07990 * 126.07354 * 179.97438 * 6 5 4 36 36 H 1.08004 * 127.31650 * 180.23719 * 7 6 5 37 37 H 0.97000 * 120.00257 * 356.96440 * 11 9 8 38 38 H 1.08994 * 109.47451 * 64.46247 * 12 11 9 39 39 H 1.09001 * 109.46601 * 304.46682 * 12 11 9 40 40 H 1.09004 * 109.50820 * 307.90123 * 15 13 12 41 41 H 1.09002 * 109.51183 * 67.99644 * 15 13 12 42 42 H 1.08998 * 109.51020 * 57.35070 * 17 16 15 43 43 H 1.09003 * 109.51183 * 177.49291 * 17 16 15 44 44 H 1.09000 * 109.68014 * 292.57868 * 18 17 16 45 45 H 1.08999 * 109.68386 * 172.02800 * 18 17 16 46 46 H 0.97002 * 119.99863 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.3626 -0.8258 2.2923 6 6 2.0626 -1.4889 3.1771 7 6 3.2884 -1.8182 2.5940 8 6 3.2405 -1.2886 1.3162 9 6 4.2932 -1.3606 0.2903 10 8 5.2873 -2.0336 0.4852 11 7 4.1554 -0.6809 -0.8654 12 6 5.2322 -0.6989 -1.8586 13 6 4.8729 0.2333 -3.0173 14 1 4.5982 1.2137 -2.6281 15 6 3.6999 -0.3558 -3.8092 16 8 3.4926 0.4209 -4.9914 17 6 4.5980 0.4132 -5.8980 18 6 5.8169 1.0417 -5.2132 19 7 6.0249 0.3647 -3.9233 20 6 7.2557 -0.1236 -3.5739 21 1 7.3332 -1.0533 -3.0299 22 6 8.4037 0.5764 -3.9191 23 7 8.3247 1.8481 -4.2492 24 14 10.0604 -0.2864 -3.9151 25 1 10.0707 -1.3431 -4.9583 26 1 11.1331 0.7005 -4.1994 27 1 10.2945 -0.9023 -2.5842 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1272 1.4435 -0.0785 33 1 1.6140 1.9785 -0.8482 34 1 1.7422 1.9332 0.9266 35 1 1.7472 -1.7400 4.1790 36 1 4.1015 -2.3676 3.0450 37 1 3.3434 -0.1798 -1.0396 38 1 5.3622 -1.7134 -2.2352 39 1 6.1594 -0.3618 -1.3952 40 1 3.9276 -1.3854 -4.0853 41 1 2.7991 -0.3342 -3.1958 42 1 4.8289 -0.6135 -6.1817 43 1 4.3431 0.9890 -6.7877 44 1 5.6368 2.1036 -5.0456 45 1 6.6980 0.9130 -5.8417 46 1 9.1269 2.3372 -4.4908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050936524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:47 Heat of formation + Delta-G solvation = 33.043878 kcal Electronic energy + Delta-G solvation = -28729.073472 eV Core-core repulsion = 24849.997431 eV Total energy + Delta-G solvation = -3879.076041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.72150 -39.44609 -38.40755 -36.47909 -35.16692 -34.09870 -31.80616 -30.96553 -30.55635 -30.27765 -27.67229 -27.10813 -26.06026 -23.83652 -23.49128 -22.81239 -21.41850 -21.03476 -20.31798 -19.60603 -17.92104 -16.85297 -16.36405 -15.99976 -15.75640 -15.66609 -15.18495 -15.00813 -14.71706 -14.47474 -14.37715 -13.97169 -13.75582 -13.55339 -13.44117 -13.20628 -12.94084 -12.78331 -12.57170 -12.44227 -12.14660 -11.73792 -11.66275 -11.37801 -11.22914 -11.05751 -10.86035 -10.82853 -10.52756 -10.35932 -10.17676 -9.97338 -9.70542 -9.28878 -9.15251 -9.06794 -8.80809 -8.59710 -6.72542 -5.94136 -3.49063 1.24669 2.21365 2.55791 3.13846 3.29962 3.33193 3.38321 3.41098 4.01623 4.30048 4.37741 4.40080 4.46592 4.61311 4.80510 5.11877 5.16866 5.21916 5.22566 5.29037 5.34009 5.40491 5.42423 5.49447 5.54628 5.68813 5.77352 5.81111 5.81960 5.84955 6.03152 6.09101 6.16656 6.30713 6.42274 6.46237 6.58087 6.63405 6.71677 6.89854 7.28852 7.48205 7.69176 7.73677 7.92718 8.21274 8.29946 8.99946 9.61270 10.23937 11.11804 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014723 B = 0.004035 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.281795 B = 6937.375701 C = 8304.547658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.129 3.871 3 C -0.180 4.180 4 N -0.272 5.272 5 N -0.273 5.273 6 C -0.009 4.009 7 C -0.160 4.160 8 C -0.038 4.038 9 C 0.585 3.415 10 O -0.518 6.518 11 N -0.732 5.732 12 C 0.125 3.875 13 C 0.130 3.870 14 H 0.038 0.962 15 C 0.051 3.949 16 O -0.392 6.392 17 C 0.037 3.963 18 C 0.147 3.853 19 N -0.581 5.581 20 C -0.276 4.276 21 H 0.068 0.932 22 C 0.022 3.978 23 N -0.889 5.889 24 Si 0.900 3.100 25 H -0.281 1.281 26 H -0.290 1.290 27 H -0.277 1.277 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.186 0.814 36 H 0.163 0.837 37 H 0.393 0.607 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.033 0.967 45 H 0.077 0.923 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.410 -2.611 6.971 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.029 3.971 3 C -0.238 4.238 4 N -0.063 5.063 5 N -0.106 5.106 6 C -0.185 4.185 7 C -0.189 4.189 8 C -0.165 4.165 9 C 0.369 3.631 10 O -0.392 6.392 11 N -0.389 5.389 12 C 0.003 3.997 13 C 0.023 3.977 14 H 0.056 0.944 15 C -0.027 4.027 16 O -0.310 6.310 17 C -0.041 4.041 18 C 0.021 3.979 19 N -0.307 5.307 20 C -0.405 4.405 21 H 0.085 0.915 22 C -0.180 4.180 23 N -0.529 5.529 24 Si 0.729 3.271 25 H -0.207 1.207 26 H -0.215 1.215 27 H -0.203 1.203 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.203 0.797 36 H 0.180 0.820 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.100 0.900 44 H 0.051 0.949 45 H 0.096 0.904 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.733 -2.249 6.677 17.238 hybrid contribution 1.654 -0.566 0.081 1.750 sum -14.078 -2.815 6.758 15.868 Atomic orbital electron populations 1.21955 0.91023 1.03773 1.04096 1.21881 0.97915 0.93880 0.83464 1.22445 1.02927 0.93668 1.04765 1.46079 1.10226 1.38962 1.11041 1.73051 1.24687 1.19363 0.93478 1.23586 0.92905 1.01980 1.00070 1.22186 0.99970 1.04250 0.92535 1.21888 0.89360 1.06513 0.98721 1.16962 0.85133 0.80198 0.80771 1.90852 1.29543 1.40385 1.78444 1.46698 1.21761 1.51822 1.18606 1.21633 0.89752 1.00482 0.87842 1.21253 0.90179 0.96000 0.90312 0.94432 1.23051 0.97756 0.94602 0.87332 1.87777 1.40109 1.71757 1.31405 1.23314 0.88648 1.00262 0.91861 1.21324 0.94905 0.94647 0.87012 1.43880 1.04909 1.68726 1.13135 1.18982 0.81949 1.02316 1.37223 0.91462 1.25294 0.98399 0.94483 0.99858 1.70054 1.28624 1.06608 1.47644 0.86421 0.83273 0.78887 0.78567 1.20742 1.21533 1.20258 0.90290 0.89989 0.91469 0.87871 0.90913 0.88957 0.90609 0.79688 0.81957 0.76743 0.91114 0.88801 0.93339 0.91074 0.93843 0.89986 0.94907 0.90438 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.87 37.16 0.33 -0.84 16 2 C 0.13 1.26 2.86 -67.93 -0.19 1.07 16 3 C -0.18 -1.67 8.95 37.15 0.33 -1.34 16 4 N -0.27 -3.35 3.27 -50.69 -0.17 -3.51 16 5 N -0.27 -3.35 10.94 30.59 0.33 -3.01 16 6 C -0.01 -0.10 12.03 -17.43 -0.21 -0.31 16 7 C -0.16 -2.06 10.85 -38.99 -0.42 -2.49 16 8 C -0.04 -0.54 6.95 -82.06 -0.57 -1.11 16 9 C 0.59 9.81 7.78 -12.63 -0.10 9.71 16 10 O -0.52 -10.50 16.93 5.25 0.09 -10.42 16 11 N -0.73 -11.30 4.89 -61.47 -0.30 -11.60 16 12 C 0.13 2.35 3.93 -4.04 -0.02 2.33 16 13 C 0.13 2.53 3.16 -67.42 -0.21 2.31 16 14 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 15 C 0.05 0.86 6.11 37.31 0.23 1.09 16 16 O -0.39 -7.17 10.74 -35.23 -0.38 -7.54 16 17 C 0.04 0.68 6.98 37.31 0.26 0.94 16 18 C 0.15 3.27 5.44 -3.54 -0.02 3.25 16 19 N -0.58 -13.65 2.97 -164.31 -0.49 -14.13 16 20 C -0.28 -7.14 8.21 -15.06 -0.12 -7.26 16 21 H 0.07 1.74 6.72 -52.49 -0.35 1.39 16 22 C 0.02 0.58 4.86 -17.43 -0.08 0.49 16 23 N -0.89 -24.76 12.10 55.49 0.67 -24.09 16 24 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H 0.08 0.64 7.95 -51.93 -0.41 0.23 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.98 5.89 -51.93 -0.31 0.68 16 32 H 0.07 0.81 6.89 -51.93 -0.36 0.45 16 33 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.19 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.16 1.90 8.06 -52.48 -0.42 1.48 16 37 H 0.39 5.05 2.28 -40.82 -0.09 4.96 16 38 H 0.07 1.38 7.92 -51.93 -0.41 0.96 16 39 H 0.09 2.06 7.14 -51.93 -0.37 1.69 16 40 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 41 H 0.07 0.95 7.57 -51.93 -0.39 0.56 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 44 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.08 1.87 7.05 -51.93 -0.37 1.50 16 46 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -31.62 366.82 -7.39 -39.01 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.85 Total: 5.86 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -0.80 Total: 7.85 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.05 Total: -56.36 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.29 Total: -17.96 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.62 -7.39 -39.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050936524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.055 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds