Wall clock time and date at job start Tue Mar 31 2020 13:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47397 * 2 1 4 4 N 1.46506 * 109.46862 * 119.99962 * 2 1 3 5 5 N 1.28441 * 125.18866 * 335.75987 * 4 2 1 6 6 C 1.30864 * 110.92963 * 180.02562 * 5 4 2 7 7 C 1.39678 * 107.85467 * 359.77221 * 6 5 4 8 8 C 1.36594 * 125.19163 * 155.78484 * 4 2 1 9 9 C 1.47168 * 126.88421 * 359.94580 * 8 4 2 10 10 O 1.21626 * 120.00089 * 186.94730 * 9 8 4 11 11 N 1.34780 * 119.99833 * 6.94117 * 9 8 4 12 12 C 1.46498 * 119.99904 * 176.96745 * 11 9 8 13 13 C 1.52996 * 109.47138 * 184.47135 * 12 11 9 14 14 H 1.08997 * 109.68241 * 51.66539 * 13 12 11 15 15 C 1.53302 * 109.68110 * 291.11094 * 13 12 11 16 16 O 1.42960 * 109.22525 * 187.97844 * 15 13 12 17 17 C 1.42957 * 114.16707 * 62.57602 * 16 15 13 18 18 C 1.53287 * 109.22683 * 297.42110 * 17 16 15 19 19 N 1.47149 * 109.68396 * 172.18877 * 13 12 11 20 20 C 1.36941 * 120.97920 * 349.97644 * 19 13 12 21 21 H 1.08000 * 119.99649 * 37.61512 * 20 19 13 22 22 C 1.38813 * 120.00185 * 217.60864 * 20 19 13 23 23 N 1.31624 * 119.99885 * 18.22592 * 22 20 19 24 24 Si 1.86792 * 120.00113 * 198.22692 * 22 20 19 25 25 H 1.48496 * 109.47454 * 64.99685 * 24 22 20 26 26 H 1.48508 * 109.46934 * 185.00027 * 24 22 20 27 27 H 1.48505 * 109.47030 * 304.99666 * 24 22 20 28 28 H 1.08992 * 109.47209 * 300.00476 * 1 2 3 29 29 H 1.09004 * 109.46757 * 59.99970 * 1 2 3 30 30 H 1.08994 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47613 * 239.99411 * 2 1 3 32 32 H 1.09000 * 109.47825 * 184.38020 * 3 2 1 33 33 H 1.09008 * 109.47191 * 304.38166 * 3 2 1 34 34 H 1.09000 * 109.47605 * 64.37501 * 3 2 1 35 35 H 1.07990 * 126.07354 * 179.97438 * 6 5 4 36 36 H 1.08004 * 127.31650 * 180.23719 * 7 6 5 37 37 H 0.97000 * 120.00257 * 356.96440 * 11 9 8 38 38 H 1.08994 * 109.47451 * 64.46247 * 12 11 9 39 39 H 1.09001 * 109.46601 * 304.46682 * 12 11 9 40 40 H 1.09004 * 109.50820 * 307.90123 * 15 13 12 41 41 H 1.09002 * 109.51183 * 67.99644 * 15 13 12 42 42 H 1.08998 * 109.51020 * 57.35070 * 17 16 15 43 43 H 1.09003 * 109.51183 * 177.49291 * 17 16 15 44 44 H 1.09000 * 109.68014 * 292.57868 * 18 17 16 45 45 H 1.08999 * 109.68386 * 172.02800 * 18 17 16 46 46 H 0.97002 * 119.99863 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.3626 -0.8258 2.2923 6 6 2.0626 -1.4889 3.1771 7 6 3.2884 -1.8182 2.5940 8 6 3.2405 -1.2886 1.3162 9 6 4.2932 -1.3606 0.2903 10 8 5.2873 -2.0336 0.4852 11 7 4.1554 -0.6809 -0.8654 12 6 5.2322 -0.6989 -1.8586 13 6 4.8729 0.2333 -3.0173 14 1 4.5982 1.2137 -2.6281 15 6 3.6999 -0.3558 -3.8092 16 8 3.4926 0.4209 -4.9914 17 6 4.5980 0.4132 -5.8980 18 6 5.8169 1.0417 -5.2132 19 7 6.0249 0.3647 -3.9233 20 6 7.2557 -0.1236 -3.5739 21 1 7.3332 -1.0533 -3.0299 22 6 8.4037 0.5764 -3.9191 23 7 8.3247 1.8481 -4.2492 24 14 10.0604 -0.2864 -3.9151 25 1 10.0707 -1.3431 -4.9583 26 1 11.1331 0.7005 -4.1994 27 1 10.2945 -0.9023 -2.5842 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1272 1.4435 -0.0785 33 1 1.6140 1.9785 -0.8482 34 1 1.7422 1.9332 0.9266 35 1 1.7472 -1.7400 4.1790 36 1 4.1015 -2.3676 3.0450 37 1 3.3434 -0.1798 -1.0396 38 1 5.3622 -1.7134 -2.2352 39 1 6.1594 -0.3618 -1.3952 40 1 3.9276 -1.3854 -4.0853 41 1 2.7991 -0.3342 -3.1958 42 1 4.8289 -0.6135 -6.1817 43 1 4.3431 0.9890 -6.7877 44 1 5.6368 2.1036 -5.0456 45 1 6.6980 0.9130 -5.8417 46 1 9.1269 2.3372 -4.4908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050936524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:46 Heat of formation + Delta-G solvation = 11.415534 kcal Electronic energy + Delta-G solvation = -28730.011348 eV Core-core repulsion = 24849.997431 eV Total energy + Delta-G solvation = -3880.013917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.68799 -40.86882 -39.92059 -37.46249 -36.64919 -35.67824 -33.45900 -32.50675 -31.63648 -31.37974 -28.86838 -28.35166 -27.54364 -25.32639 -24.84516 -23.97848 -22.82830 -22.13788 -21.62154 -21.04320 -19.04848 -18.51364 -17.54689 -17.46919 -17.10776 -16.86712 -16.77730 -16.27065 -16.14849 -15.84608 -15.57012 -15.48375 -15.21166 -14.88448 -14.69192 -14.48216 -14.17033 -13.88713 -13.79584 -13.25873 -13.12305 -13.07388 -12.95880 -12.81584 -12.64537 -12.46616 -12.43329 -12.21679 -12.14741 -12.00074 -11.84911 -11.33227 -11.28479 -10.72219 -10.57684 -10.46022 -10.16921 -10.03387 -8.65650 -7.95109 -5.52682 0.12737 1.32334 1.44399 1.45246 1.51801 1.61464 1.81627 2.06794 2.44481 2.92304 3.18625 3.21065 3.37229 3.50139 3.64620 3.82172 3.85616 3.98073 3.99769 4.17822 4.23984 4.37979 4.48048 4.49192 4.56478 4.56862 4.58870 4.62246 4.74002 4.78617 4.87653 4.90108 4.93075 4.99702 5.05737 5.08340 5.21990 5.23223 5.47570 5.49748 5.63215 5.71856 6.19822 6.23932 6.33410 6.85238 7.02218 7.03829 7.67411 8.27019 9.07640 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014723 B = 0.004035 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.281795 B = 6937.375701 C = 8304.547658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.119 3.881 3 C -0.177 4.177 4 N -0.268 5.268 5 N -0.275 5.275 6 C -0.003 4.003 7 C -0.164 4.164 8 C -0.065 4.065 9 C 0.586 3.414 10 O -0.561 6.561 11 N -0.716 5.716 12 C 0.143 3.857 13 C 0.130 3.870 14 H 0.032 0.968 15 C 0.056 3.944 16 O -0.391 6.391 17 C 0.049 3.951 18 C 0.150 3.850 19 N -0.600 5.600 20 C -0.275 4.275 21 H 0.063 0.937 22 C -0.027 4.027 23 N -0.920 5.920 24 Si 0.956 3.044 25 H -0.274 1.274 26 H -0.291 1.291 27 H -0.279 1.279 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.048 0.952 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.222 0.778 36 H 0.168 0.832 37 H 0.407 0.593 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.113 0.887 42 H 0.049 0.951 43 H 0.112 0.888 44 H 0.009 0.991 45 H 0.052 0.948 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.044 -3.139 7.257 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.020 3.980 3 C -0.235 4.235 4 N -0.059 5.059 5 N -0.107 5.107 6 C -0.179 4.179 7 C -0.193 4.193 8 C -0.192 4.192 9 C 0.373 3.627 10 O -0.439 6.439 11 N -0.375 5.375 12 C 0.020 3.980 13 C 0.023 3.977 14 H 0.050 0.950 15 C -0.022 4.022 16 O -0.309 6.309 17 C -0.028 4.028 18 C 0.025 3.975 19 N -0.326 5.326 20 C -0.405 4.405 21 H 0.080 0.920 22 C -0.225 4.225 23 N -0.563 5.563 24 Si 0.783 3.217 25 H -0.200 1.200 26 H -0.217 1.217 27 H -0.205 1.205 28 H 0.094 0.906 29 H 0.126 0.874 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.135 0.865 34 H 0.094 0.906 35 H 0.239 0.761 36 H 0.186 0.814 37 H 0.250 0.750 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.131 0.869 42 H 0.067 0.933 43 H 0.130 0.870 44 H 0.027 0.973 45 H 0.071 0.929 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -18.427 -2.769 6.955 19.890 hybrid contribution 2.394 -0.390 0.091 2.427 sum -16.034 -3.159 7.046 17.796 Atomic orbital electron populations 1.21958 0.89043 1.03925 1.05245 1.22176 0.99490 0.93738 0.82644 1.22451 1.01427 0.93740 1.05918 1.46330 1.09359 1.38545 1.11707 1.73073 1.24733 1.19329 0.93611 1.24164 0.91745 1.00744 1.01207 1.22474 1.00907 1.03739 0.92187 1.21625 0.89991 1.08874 0.98721 1.17291 0.85124 0.79250 0.81060 1.90822 1.31465 1.42300 1.79289 1.46475 1.21442 1.51741 1.17815 1.21177 0.89308 0.99616 0.87939 1.21378 0.89948 0.96007 0.90342 0.95001 1.23106 0.98004 0.94096 0.86974 1.87790 1.39554 1.71984 1.31612 1.23189 0.86795 1.00603 0.92261 1.21222 0.95945 0.93687 0.86685 1.44125 1.05301 1.68643 1.14497 1.19169 0.83278 1.01991 1.36017 0.91968 1.25917 1.01165 0.95001 1.00426 1.70164 1.28952 1.07727 1.49467 0.85544 0.79903 0.77896 0.78338 1.20026 1.21721 1.20494 0.90562 0.87426 0.91771 0.87697 0.93247 0.86524 0.90601 0.76120 0.81427 0.74988 0.91840 0.92669 0.93119 0.86885 0.93263 0.87008 0.97266 0.92942 0.93799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.87 71.98 0.64 -1.14 16 2 C 0.12 2.05 2.86 44.99 0.13 2.18 16 3 C -0.18 -2.94 8.95 71.98 0.64 -2.30 16 4 N -0.27 -6.14 3.27 -314.29 -1.03 -7.17 16 5 N -0.27 -6.08 10.94 -57.14 -0.63 -6.71 16 6 C 0.00 -0.06 12.03 85.19 1.03 0.96 16 7 C -0.16 -4.02 10.85 22.66 0.25 -3.78 16 8 C -0.07 -1.83 6.95 40.79 0.28 -1.55 16 9 C 0.59 19.85 7.78 86.59 0.67 20.53 16 10 O -0.56 -23.47 16.93 -4.11 -0.07 -23.54 16 11 N -0.72 -22.02 4.89 -466.64 -2.28 -24.30 16 12 C 0.14 5.47 3.93 86.38 0.34 5.81 16 13 C 0.13 5.01 3.16 44.97 0.14 5.15 16 14 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 15 C 0.06 1.75 6.11 72.08 0.44 2.19 16 16 O -0.39 -13.19 10.74 -148.98 -1.60 -14.79 16 17 C 0.05 1.71 6.98 72.08 0.50 2.22 16 18 C 0.15 6.76 5.44 86.35 0.47 7.23 16 19 N -0.60 -28.56 2.97 -673.74 -2.00 -30.56 16 20 C -0.27 -14.57 8.21 84.03 0.69 -13.88 16 21 H 0.06 3.32 6.72 -2.91 -0.02 3.30 16 22 C -0.03 -1.45 4.86 84.86 0.41 -1.04 16 23 N -0.92 -52.85 12.10 21.65 0.26 -52.59 16 24 Si 0.96 44.36 29.59 68.60 2.03 46.39 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 27 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 28 H 0.08 1.01 7.95 -2.39 -0.02 0.99 16 29 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 1.73 5.89 -2.39 -0.01 1.71 16 32 H 0.05 1.06 6.89 -2.39 -0.02 1.04 16 33 H 0.12 1.34 8.14 -2.38 -0.02 1.33 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.22 2.51 8.06 -2.92 -0.02 2.49 16 36 H 0.17 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.41 9.98 2.28 -92.71 -0.21 9.77 16 38 H 0.06 2.51 7.92 -2.39 -0.02 2.49 16 39 H 0.05 2.55 7.14 -2.39 -0.02 2.53 16 40 H 0.05 1.60 8.09 -2.39 -0.02 1.58 16 41 H 0.11 2.57 7.57 -2.39 -0.02 2.55 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 44 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.05 2.59 7.05 -2.39 -0.02 2.58 16 46 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -70.46 366.82 2.10 -68.36 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.78 Total: 22.30 kcal Atomic # 6 Polarization: 15.96 SS G_CDS: 6.64 Total: 22.60 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -5.67 Total: -121.32 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -1.67 Total: -38.33 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -70.46 2.10 -68.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050936524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.780 kcal (2) G-P(sol) polarization free energy of solvation -70.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds