Wall clock time and date at job start Tue Mar 31 2020 13:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47091 * 2 1 4 4 N 1.46494 * 109.47244 * 179.97438 * 3 2 1 5 5 N 1.28442 * 125.19171 * 271.97147 * 4 3 2 6 6 C 1.30863 * 110.92985 * 180.02562 * 5 4 3 7 7 C 1.39673 * 107.85825 * 359.77000 * 6 5 4 8 8 C 1.36599 * 125.18831 * 91.98801 * 4 3 2 9 9 C 1.47167 * 126.88699 * 359.94805 * 8 4 3 10 10 O 1.21624 * 119.99583 * 5.38346 * 9 8 4 11 11 N 1.34767 * 119.99959 * 185.38784 * 9 8 4 12 12 C 1.46503 * 119.99954 * 175.08580 * 11 9 8 13 13 C 1.52996 * 109.47548 * 179.97438 * 12 11 9 14 14 H 1.09003 * 109.68015 * 300.10495 * 13 12 11 15 15 C 1.53293 * 109.68606 * 179.54385 * 13 12 11 16 16 O 1.42957 * 109.22331 * 187.97495 * 15 13 12 17 17 C 1.42958 * 114.16617 * 62.58520 * 16 15 13 18 18 C 1.53291 * 109.22322 * 297.41650 * 17 16 15 19 19 N 1.47152 * 108.38575 * 52.30283 * 18 17 16 20 20 C 1.36930 * 120.98255 * 129.48424 * 19 18 17 21 21 H 1.08002 * 120.00254 * 210.59279 * 20 19 18 22 22 C 1.38819 * 120.00151 * 30.59875 * 20 19 18 23 23 N 1.31614 * 119.99805 * 11.21052 * 22 20 19 24 24 Si 1.86801 * 120.00149 * 191.21753 * 22 20 19 25 25 H 1.48509 * 109.46795 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47227 * 119.99601 * 24 22 20 27 27 H 1.48494 * 109.47033 * 239.99614 * 24 22 20 28 28 H 1.08998 * 109.46876 * 60.00215 * 1 2 3 29 29 H 1.08994 * 109.47061 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47628 * 300.00433 * 1 2 3 31 31 H 1.08992 * 109.47312 * 239.99899 * 2 1 3 32 32 H 1.08998 * 109.46876 * 119.99785 * 2 1 3 33 33 H 1.08999 * 109.46827 * 59.99605 * 3 2 1 34 34 H 1.09003 * 109.46608 * 300.00205 * 3 2 1 35 35 H 1.07994 * 126.07143 * 180.02562 * 6 5 4 36 36 H 1.08000 * 127.31965 * 180.23553 * 7 6 5 37 37 H 0.97002 * 120.00350 * 355.08606 * 11 9 8 38 38 H 1.09003 * 109.46938 * 59.99665 * 12 11 9 39 39 H 1.09000 * 109.47046 * 299.99856 * 12 11 9 40 40 H 1.09000 * 109.51375 * 307.90329 * 15 13 12 41 41 H 1.09006 * 109.50875 * 68.05002 * 15 13 12 42 42 H 1.09009 * 109.51176 * 177.49428 * 17 16 15 43 43 H 1.08999 * 109.55875 * 57.36837 * 17 16 15 44 44 H 1.09004 * 109.67998 * 292.57919 * 18 17 16 45 45 H 1.09004 * 109.71400 * 172.04578 * 18 17 16 46 46 H 0.96999 * 120.00261 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 7 4.2448 1.4067 1.0500 6 6 5.5132 1.4183 0.7283 7 6 5.6014 1.4611 -0.6649 8 6 4.2926 1.4812 -1.1148 9 6 3.8403 1.5285 -2.5144 10 8 2.6554 1.6350 -2.7672 11 7 4.7390 1.4536 -3.5159 12 6 4.2825 1.3921 -4.9066 13 6 5.4937 1.3138 -5.8381 14 1 6.1203 2.1950 -5.7003 15 6 5.0212 1.2377 -7.2944 16 8 6.1439 0.9785 -8.1406 17 6 6.7887 -0.2726 -7.8904 18 6 7.3518 -0.2740 -6.4647 19 7 6.2715 0.1010 -5.5386 20 6 5.9983 -0.6560 -4.4308 21 1 4.9899 -0.7081 -4.0475 22 6 7.0174 -1.3565 -3.8001 23 7 8.2723 -1.1254 -4.1228 24 14 6.6078 -2.6273 -2.4937 25 1 5.1351 -2.6977 -2.3162 26 1 7.1199 -3.9553 -2.9171 27 1 7.2428 -2.2387 -1.2088 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 6.3442 1.3944 1.4176 36 1 6.4999 1.4772 -1.2640 37 1 5.6881 1.4404 -3.3159 38 1 3.7033 2.2858 -5.1387 39 1 3.6591 0.5088 -5.0457 40 1 4.2928 0.4336 -7.3993 41 1 4.5623 2.1849 -7.5781 42 1 7.6017 -0.4121 -8.6031 43 1 6.0675 -1.0828 -7.9978 44 1 8.1657 0.4473 -6.3907 45 1 7.7199 -1.2694 -6.2157 46 1 8.9844 -1.6151 -3.6824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050939285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:53 Heat of formation + Delta-G solvation = 22.279029 kcal Electronic energy + Delta-G solvation = -28870.162043 eV Core-core repulsion = 24990.619203 eV Total energy + Delta-G solvation = -3879.542840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.26914 -39.21740 -38.25340 -35.62482 -35.17152 -33.65893 -31.92052 -31.35422 -30.72181 -30.11839 -27.27202 -26.47950 -25.65324 -23.50161 -22.82842 -22.03659 -21.77516 -20.81822 -19.84192 -19.42782 -17.84191 -16.60711 -16.02268 -16.00022 -15.56357 -15.49498 -15.20849 -14.85555 -14.64891 -14.31497 -14.07887 -13.76334 -13.75757 -13.65408 -13.15491 -13.09641 -12.88301 -12.68819 -12.12480 -11.99728 -11.95212 -11.61465 -11.42686 -11.09121 -10.92732 -10.86388 -10.79192 -10.58728 -10.45990 -10.27006 -10.09940 -9.73866 -9.65187 -9.05783 -8.97520 -8.78000 -8.70623 -8.35169 -6.78900 -5.95333 -3.44930 1.58042 2.59378 2.87034 3.26272 3.36455 3.38639 3.56293 3.73134 4.31036 4.49018 4.64358 4.80270 4.98727 5.05519 5.11633 5.12932 5.23125 5.39701 5.40888 5.51482 5.54829 5.64449 5.67106 5.78568 5.86249 5.90869 5.95943 6.00861 6.05443 6.09513 6.11050 6.15124 6.17305 6.29180 6.47443 6.68158 6.74706 6.93778 6.96509 7.03039 7.45360 7.65594 7.82450 8.00480 8.23573 8.30241 8.60511 9.00875 9.61298 10.19905 11.10871 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012975 B = 0.004761 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.464665 B = 5879.566348 C = 6844.841536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.260 5.260 5 N -0.286 5.286 6 C -0.008 4.008 7 C -0.181 4.181 8 C -0.030 4.030 9 C 0.584 3.416 10 O -0.564 6.564 11 N -0.676 5.676 12 C 0.138 3.862 13 C 0.124 3.876 14 H 0.043 0.957 15 C 0.057 3.943 16 O -0.392 6.392 17 C 0.034 3.966 18 C 0.144 3.856 19 N -0.591 5.591 20 C -0.258 4.258 21 H 0.073 0.927 22 C 0.014 3.986 23 N -0.897 5.897 24 Si 0.892 3.108 25 H -0.279 1.279 26 H -0.289 1.289 27 H -0.285 1.285 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.183 0.817 36 H 0.164 0.836 37 H 0.419 0.581 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.041 0.959 44 H 0.030 0.970 45 H 0.093 0.907 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.730 4.721 3.370 9.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C -0.003 4.003 4 N -0.048 5.048 5 N -0.119 5.119 6 C -0.184 4.184 7 C -0.209 4.209 8 C -0.158 4.158 9 C 0.369 3.631 10 O -0.445 6.445 11 N -0.327 5.327 12 C 0.014 3.986 13 C 0.017 3.983 14 H 0.061 0.939 15 C -0.023 4.023 16 O -0.310 6.310 17 C -0.043 4.043 18 C 0.018 3.982 19 N -0.317 5.317 20 C -0.387 4.387 21 H 0.091 0.909 22 C -0.186 4.186 23 N -0.541 5.541 24 Si 0.722 3.278 25 H -0.204 1.204 26 H -0.215 1.215 27 H -0.211 1.211 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.137 0.863 35 H 0.200 0.800 36 H 0.182 0.818 37 H 0.258 0.742 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.059 0.941 44 H 0.048 0.952 45 H 0.111 0.889 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.209 4.798 4.014 11.133 hybrid contribution 1.032 -1.106 0.412 1.568 sum -8.177 3.692 4.426 10.004 Atomic orbital electron populations 1.21647 0.94170 1.02316 1.02144 1.21832 0.96884 0.95446 1.03325 1.22262 0.72915 0.99506 1.05634 1.45709 1.07372 1.49924 1.01796 1.73114 1.04359 1.20384 1.14018 1.23512 0.93325 1.06367 0.95149 1.22400 0.96103 1.06921 0.95513 1.21479 0.91354 1.13049 0.89914 1.16871 0.85714 0.77336 0.83169 1.90694 1.16456 1.52623 1.84713 1.45739 1.10849 1.70783 1.05288 1.21230 0.96435 1.01124 0.79853 1.21443 0.92343 0.91864 0.92652 0.93943 1.22851 0.88293 1.00193 0.90916 1.87805 1.45594 1.39270 1.58375 1.23356 0.96180 0.84894 0.99911 1.21425 0.89667 1.02044 0.85031 1.44100 1.37945 1.23797 1.25885 1.19245 0.93127 1.22767 1.03542 0.90932 1.25079 0.95104 1.00449 0.97921 1.69980 0.98096 1.42120 1.43866 0.86369 0.78059 0.81616 0.81779 1.20382 1.21525 1.21105 0.91943 0.92091 0.92552 0.90907 0.91411 0.88963 0.86262 0.79976 0.81842 0.74190 0.91884 0.91236 0.93482 0.89868 0.90223 0.94114 0.95215 0.88871 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.91 37.16 0.37 -1.10 16 2 C -0.14 -1.78 6.26 -26.73 -0.17 -1.95 16 3 C 0.12 1.60 5.91 -4.04 -0.02 1.58 16 4 N -0.26 -4.30 3.35 -57.14 -0.19 -4.50 16 5 N -0.29 -4.73 11.90 30.59 0.36 -4.37 16 6 C -0.01 -0.12 12.03 -17.43 -0.21 -0.33 16 7 C -0.18 -3.02 10.50 -38.98 -0.41 -3.43 16 8 C -0.03 -0.53 6.96 -82.06 -0.57 -1.10 16 9 C 0.58 10.84 7.79 -12.64 -0.10 10.74 16 10 O -0.56 -10.99 14.64 5.26 0.08 -10.91 16 11 N -0.68 -12.36 3.75 -61.47 -0.23 -12.59 16 12 C 0.14 2.41 4.45 -4.04 -0.02 2.39 16 13 C 0.12 2.31 3.21 -67.42 -0.22 2.09 16 14 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 15 C 0.06 0.96 6.29 37.31 0.23 1.19 16 16 O -0.39 -7.36 10.74 -35.23 -0.38 -7.74 16 17 C 0.03 0.64 6.98 37.31 0.26 0.90 16 18 C 0.14 3.15 5.38 -3.54 -0.02 3.14 16 19 N -0.59 -13.07 3.03 -164.30 -0.50 -13.57 16 20 C -0.26 -6.15 7.08 -15.06 -0.11 -6.26 16 21 H 0.07 1.78 5.78 -52.49 -0.30 1.48 16 22 C 0.01 0.36 5.05 -17.43 -0.09 0.27 16 23 N -0.90 -23.42 11.12 55.49 0.62 -22.80 16 24 Si 0.89 20.74 29.57 -169.99 -5.03 15.71 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.12 1.71 6.11 -51.93 -0.32 1.39 16 35 H 0.18 2.21 8.06 -52.49 -0.42 1.78 16 36 H 0.16 2.63 7.58 -52.49 -0.40 2.23 16 37 H 0.42 8.03 6.35 -40.82 -0.26 7.77 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.31 7.57 -51.93 -0.39 0.92 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 2.26 6.30 -51.93 -0.33 1.94 16 46 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -28.59 369.12 -7.82 -36.41 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -7.05 Total: 10.65 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -1.06 Total: 8.14 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: 0.06 Total: -57.82 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.30 Total: -18.65 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.59 -7.82 -36.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050939285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.692 kcal (2) G-P(sol) polarization free energy of solvation -28.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds